Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0443

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0441 and EX28DRAFT_0442 overlap by 26 nucleotidesEX28DRAFT_0442 and EX28DRAFT_0443 are separated by 487 nucleotidesEX28DRAFT_0443 and EX28DRAFT_0444 overlap by 1 nucleotidesEX28DRAFT_0444 and EX28DRAFT_0445 overlap by 1 nucleotides EX28DRAFT_0441: EX28DRAFT_0441 - Acetyltransferases, at 422,753 to 423,208 _0441 EX28DRAFT_0442: EX28DRAFT_0442 - Predicted integral membrane protein, at 423,183 to 423,515 _0442 EX28DRAFT_0443: EX28DRAFT_0443 - Periplasmic protein involved in polysaccharide export, at 424,003 to 425,143 _0443 EX28DRAFT_0444: EX28DRAFT_0444 - Protein-tyrosine-phosphatase, at 425,143 to 425,592 _0444 EX28DRAFT_0445: EX28DRAFT_0445 - capsular exopolysaccharide family, at 425,592 to 427,772 _0445 Position (kb) 424 425 426Strain fitness (log2 ratio) -2 -1 0 1at 423.200 kb on + strandat 423.200 kb on + strandat 423.200 kb on + strandat 423.212 kb on - strandat 423.253 kb on + strand, within EX28DRAFT_0442at 423.253 kb on + strand, within EX28DRAFT_0442at 423.253 kb on + strand, within EX28DRAFT_0442at 423.253 kb on + strand, within EX28DRAFT_0442at 423.254 kb on - strand, within EX28DRAFT_0442at 423.254 kb on - strand, within EX28DRAFT_0442at 423.268 kb on + strand, within EX28DRAFT_0442at 423.268 kb on + strand, within EX28DRAFT_0442at 423.269 kb on - strand, within EX28DRAFT_0442at 423.269 kb on - strand, within EX28DRAFT_0442at 423.269 kb on - strand, within EX28DRAFT_0442at 423.269 kb on - strand, within EX28DRAFT_0442at 423.309 kb on + strand, within EX28DRAFT_0442at 423.310 kb on - strand, within EX28DRAFT_0442at 423.310 kb on - strand, within EX28DRAFT_0442at 423.316 kb on + strand, within EX28DRAFT_0442at 423.331 kb on + strand, within EX28DRAFT_0442at 423.412 kb on + strand, within EX28DRAFT_0442at 423.413 kb on - strand, within EX28DRAFT_0442at 423.480 kb on + strand, within EX28DRAFT_0442at 423.481 kb on - strand, within EX28DRAFT_0442at 423.483 kb on + strandat 423.484 kb on - strandat 423.484 kb on - strandat 423.491 kb on + strandat 423.593 kb on - strandat 423.606 kb on - strandat 423.800 kb on + strandat 423.821 kb on + strandat 423.822 kb on - strandat 423.887 kb on + strandat 424.332 kb on + strand, within EX28DRAFT_0443at 424.332 kb on + strand, within EX28DRAFT_0443at 424.371 kb on + strand, within EX28DRAFT_0443at 424.382 kb on - strand, within EX28DRAFT_0443at 424.395 kb on + strand, within EX28DRAFT_0443at 424.519 kb on + strand, within EX28DRAFT_0443at 424.519 kb on + strand, within EX28DRAFT_0443at 424.520 kb on - strand, within EX28DRAFT_0443at 424.520 kb on - strand, within EX28DRAFT_0443at 424.520 kb on - strand, within EX28DRAFT_0443at 424.632 kb on + strand, within EX28DRAFT_0443at 424.680 kb on + strand, within EX28DRAFT_0443at 424.681 kb on - strand, within EX28DRAFT_0443at 424.681 kb on - strand, within EX28DRAFT_0443at 424.801 kb on - strand, within EX28DRAFT_0443at 424.873 kb on + strand, within EX28DRAFT_0443at 424.915 kb on + strand, within EX28DRAFT_0443at 424.915 kb on + strand, within EX28DRAFT_0443at 424.916 kb on - strand, within EX28DRAFT_0443at 424.945 kb on + strand, within EX28DRAFT_0443at 424.949 kb on + strand, within EX28DRAFT_0443at 424.949 kb on + strand, within EX28DRAFT_0443at 424.950 kb on - strand, within EX28DRAFT_0443at 425.012 kb on + strand, within EX28DRAFT_0443at 425.025 kb on - strand, within EX28DRAFT_0443at 425.025 kb on - strand, within EX28DRAFT_0443at 425.120 kb on + strandat 425.141 kb on + strandat 425.142 kb on - strandat 425.178 kb on + strandat 425.238 kb on + strand, within EX28DRAFT_0444at 425.519 kb on - strand, within EX28DRAFT_0444at 425.519 kb on - strand, within EX28DRAFT_0444at 425.519 kb on - strand, within EX28DRAFT_0444at 425.591 kb on - strandat 425.604 kb on - strandat 425.616 kb on + strandat 425.616 kb on + strandat 425.616 kb on + strandat 425.616 kb on + strandat 425.616 kb on + strandat 425.616 kb on + strandat 425.617 kb on - strandat 425.619 kb on - strandat 425.915 kb on - strand, within EX28DRAFT_0445at 425.925 kb on + strand, within EX28DRAFT_0445at 425.925 kb on + strand, within EX28DRAFT_0445at 425.925 kb on + strand, within EX28DRAFT_0445at 425.926 kb on - strand, within EX28DRAFT_0445at 425.926 kb on - strand, within EX28DRAFT_0445at 425.987 kb on + strand, within EX28DRAFT_0445at 425.988 kb on - strand, within EX28DRAFT_0445at 426.001 kb on + strand, within EX28DRAFT_0445at 426.002 kb on - strand, within EX28DRAFT_0445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
423,200 + -0.9
423,200 + -0.2
423,200 + -0.1
423,212 - -0.1
423,253 + EX28DRAFT_0442 0.21 +1.3
423,253 + EX28DRAFT_0442 0.21 +0.2
423,253 + EX28DRAFT_0442 0.21 +0.3
423,253 + EX28DRAFT_0442 0.21 -0.3
423,254 - EX28DRAFT_0442 0.21 -1.0
423,254 - EX28DRAFT_0442 0.21 -0.1
423,268 + EX28DRAFT_0442 0.26 +0.2
423,268 + EX28DRAFT_0442 0.26 -0.3
423,269 - EX28DRAFT_0442 0.26 -1.1
423,269 - EX28DRAFT_0442 0.26 -0.2
423,269 - EX28DRAFT_0442 0.26 +0.5
423,269 - EX28DRAFT_0442 0.26 +0.8
423,309 + EX28DRAFT_0442 0.38 -0.3
423,310 - EX28DRAFT_0442 0.38 +0.3
423,310 - EX28DRAFT_0442 0.38 +0.3
423,316 + EX28DRAFT_0442 0.40 +0.0
423,331 + EX28DRAFT_0442 0.44 -0.5
423,412 + EX28DRAFT_0442 0.69 -0.5
423,413 - EX28DRAFT_0442 0.69 -0.3
423,480 + EX28DRAFT_0442 0.89 -1.9
423,481 - EX28DRAFT_0442 0.89 +0.4
423,483 + -0.3
423,484 - +0.7
423,484 - -0.2
423,491 + +1.3
423,593 - +0.6
423,606 - -0.1
423,800 + -0.8
423,821 + -0.8
423,822 - +0.0
423,887 + -0.7
424,332 + EX28DRAFT_0443 0.29 -0.3
424,332 + EX28DRAFT_0443 0.29 +0.2
424,371 + EX28DRAFT_0443 0.32 +0.1
424,382 - EX28DRAFT_0443 0.33 -0.3
424,395 + EX28DRAFT_0443 0.34 -0.2
424,519 + EX28DRAFT_0443 0.45 +0.5
424,519 + EX28DRAFT_0443 0.45 +0.4
424,520 - EX28DRAFT_0443 0.45 -0.5
424,520 - EX28DRAFT_0443 0.45 +0.2
424,520 - EX28DRAFT_0443 0.45 -1.8
424,632 + EX28DRAFT_0443 0.55 -0.5
424,680 + EX28DRAFT_0443 0.59 +0.3
424,681 - EX28DRAFT_0443 0.59 -1.0
424,681 - EX28DRAFT_0443 0.59 +0.1
424,801 - EX28DRAFT_0443 0.70 +0.6
424,873 + EX28DRAFT_0443 0.76 -0.8
424,915 + EX28DRAFT_0443 0.80 +0.4
424,915 + EX28DRAFT_0443 0.80 -0.4
424,916 - EX28DRAFT_0443 0.80 -1.7
424,945 + EX28DRAFT_0443 0.83 -1.0
424,949 + EX28DRAFT_0443 0.83 -0.2
424,949 + EX28DRAFT_0443 0.83 +0.8
424,950 - EX28DRAFT_0443 0.83 -1.1
425,012 + EX28DRAFT_0443 0.88 +0.3
425,025 - EX28DRAFT_0443 0.90 -0.1
425,025 - EX28DRAFT_0443 0.90 +0.5
425,120 + -0.1
425,141 + -0.5
425,142 - -1.0
425,178 + +0.1
425,238 + EX28DRAFT_0444 0.21 -0.7
425,519 - EX28DRAFT_0444 0.84 +1.2
425,519 - EX28DRAFT_0444 0.84 -0.7
425,519 - EX28DRAFT_0444 0.84 -0.3
425,591 - +0.7
425,604 - -0.5
425,616 + -1.0
425,616 + -1.3
425,616 + -1.2
425,616 + -1.7
425,616 + +0.1
425,616 + -0.2
425,617 - +0.1
425,619 - -0.3
425,915 - EX28DRAFT_0445 0.15 -2.1
425,925 + EX28DRAFT_0445 0.15 -0.0
425,925 + EX28DRAFT_0445 0.15 +0.0
425,925 + EX28DRAFT_0445 0.15 +1.4
425,926 - EX28DRAFT_0445 0.15 +0.3
425,926 - EX28DRAFT_0445 0.15 +1.1
425,987 + EX28DRAFT_0445 0.18 +0.7
425,988 - EX28DRAFT_0445 0.18 +0.2
426,001 + EX28DRAFT_0445 0.19 -0.7
426,002 - EX28DRAFT_0445 0.19 +0.6

Or see this region's nucleotide sequence