Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0362

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0361 and EX28DRAFT_0362 are separated by 114 nucleotidesEX28DRAFT_0362 and EX28DRAFT_0363 are separated by 72 nucleotides EX28DRAFT_0361: EX28DRAFT_0361 - Outer membrane protein (porin), at 331,148 to 332,263 _0361 EX28DRAFT_0362: EX28DRAFT_0362 - Membrane-associated lipoprotein involved in thiamine biosynthesis, at 332,378 to 333,433 _0362 EX28DRAFT_0363: EX28DRAFT_0363 - O-6-methylguanine DNA methyltransferase, at 333,506 to 334,564 _0363 Position (kb) 332 333 334Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 331.487 kb on - strand, within EX28DRAFT_0361at 331.491 kb on - strand, within EX28DRAFT_0361at 331.510 kb on - strand, within EX28DRAFT_0361at 331.554 kb on - strand, within EX28DRAFT_0361at 331.656 kb on - strand, within EX28DRAFT_0361at 331.677 kb on + strand, within EX28DRAFT_0361at 331.748 kb on + strand, within EX28DRAFT_0361at 331.748 kb on + strand, within EX28DRAFT_0361at 331.749 kb on - strand, within EX28DRAFT_0361at 331.749 kb on - strand, within EX28DRAFT_0361at 331.865 kb on + strand, within EX28DRAFT_0361at 331.866 kb on - strand, within EX28DRAFT_0361at 331.884 kb on - strand, within EX28DRAFT_0361at 331.901 kb on + strand, within EX28DRAFT_0361at 331.901 kb on + strand, within EX28DRAFT_0361at 331.902 kb on - strand, within EX28DRAFT_0361at 331.902 kb on - strand, within EX28DRAFT_0361at 331.917 kb on - strand, within EX28DRAFT_0361at 331.974 kb on - strand, within EX28DRAFT_0361at 332.054 kb on + strand, within EX28DRAFT_0361at 332.054 kb on + strand, within EX28DRAFT_0361at 332.054 kb on + strand, within EX28DRAFT_0361at 332.055 kb on - strand, within EX28DRAFT_0361at 332.066 kb on - strand, within EX28DRAFT_0361at 332.112 kb on - strand, within EX28DRAFT_0361at 332.132 kb on + strand, within EX28DRAFT_0361at 332.133 kb on - strand, within EX28DRAFT_0361at 332.135 kb on + strand, within EX28DRAFT_0361at 332.136 kb on - strand, within EX28DRAFT_0361at 332.159 kb on + strandat 332.159 kb on + strandat 332.159 kb on + strandat 332.160 kb on - strandat 332.261 kb on + strandat 332.262 kb on - strandat 332.282 kb on + strandat 332.282 kb on + strandat 332.283 kb on - strandat 332.370 kb on - strandat 332.373 kb on - strandat 332.373 kb on - strandat 332.373 kb on - strandat 332.373 kb on - strandat 332.394 kb on + strandat 332.539 kb on + strand, within EX28DRAFT_0362at 332.707 kb on + strand, within EX28DRAFT_0362at 332.722 kb on + strand, within EX28DRAFT_0362at 332.888 kb on + strand, within EX28DRAFT_0362at 332.888 kb on + strand, within EX28DRAFT_0362at 332.889 kb on - strand, within EX28DRAFT_0362at 332.889 kb on - strand, within EX28DRAFT_0362at 332.945 kb on + strand, within EX28DRAFT_0362at 333.136 kb on + strand, within EX28DRAFT_0362at 333.137 kb on - strand, within EX28DRAFT_0362at 333.158 kb on + strand, within EX28DRAFT_0362at 333.181 kb on + strand, within EX28DRAFT_0362at 333.181 kb on + strand, within EX28DRAFT_0362at 333.182 kb on - strand, within EX28DRAFT_0362at 333.182 kb on - strand, within EX28DRAFT_0362at 333.350 kb on + strandat 333.351 kb on - strandat 333.352 kb on + strandat 333.353 kb on - strandat 333.407 kb on - strandat 333.407 kb on - strandat 333.479 kb on + strandat 333.479 kb on + strandat 333.480 kb on - strandat 333.483 kb on + strandat 333.483 kb on + strandat 333.483 kb on + strandat 333.484 kb on - strandat 333.484 kb on - strandat 333.484 kb on - strandat 333.484 kb on - strandat 333.484 kb on - strandat 333.484 kb on - strandat 333.484 kb on - strandat 333.489 kb on + strandat 333.489 kb on + strandat 333.489 kb on + strandat 333.490 kb on - strandat 333.490 kb on - strandat 333.524 kb on - strandat 333.524 kb on - strandat 333.865 kb on + strand, within EX28DRAFT_0363at 333.998 kb on + strand, within EX28DRAFT_0363at 333.998 kb on + strand, within EX28DRAFT_0363at 333.998 kb on + strand, within EX28DRAFT_0363at 333.999 kb on - strand, within EX28DRAFT_0363at 333.999 kb on - strand, within EX28DRAFT_0363at 334.071 kb on - strand, within EX28DRAFT_0363at 334.079 kb on - strand, within EX28DRAFT_0363at 334.203 kb on - strand, within EX28DRAFT_0363at 334.273 kb on - strand, within EX28DRAFT_0363

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
331,487 - EX28DRAFT_0361 0.30 -1.1
331,491 - EX28DRAFT_0361 0.31 -0.2
331,510 - EX28DRAFT_0361 0.32 -0.3
331,554 - EX28DRAFT_0361 0.36 -0.4
331,656 - EX28DRAFT_0361 0.46 -1.8
331,677 + EX28DRAFT_0361 0.47 +0.0
331,748 + EX28DRAFT_0361 0.54 -0.1
331,748 + EX28DRAFT_0361 0.54 -0.1
331,749 - EX28DRAFT_0361 0.54 -0.0
331,749 - EX28DRAFT_0361 0.54 +0.1
331,865 + EX28DRAFT_0361 0.64 -1.9
331,866 - EX28DRAFT_0361 0.64 -2.3
331,884 - EX28DRAFT_0361 0.66 -0.0
331,901 + EX28DRAFT_0361 0.67 +0.1
331,901 + EX28DRAFT_0361 0.67 +0.9
331,902 - EX28DRAFT_0361 0.68 -0.0
331,902 - EX28DRAFT_0361 0.68 +0.0
331,917 - EX28DRAFT_0361 0.69 -0.2
331,974 - EX28DRAFT_0361 0.74 -1.3
332,054 + EX28DRAFT_0361 0.81 +0.0
332,054 + EX28DRAFT_0361 0.81 -0.5
332,054 + EX28DRAFT_0361 0.81 -0.2
332,055 - EX28DRAFT_0361 0.81 +1.0
332,066 - EX28DRAFT_0361 0.82 -0.1
332,112 - EX28DRAFT_0361 0.86 +1.3
332,132 + EX28DRAFT_0361 0.88 -0.1
332,133 - EX28DRAFT_0361 0.88 -0.4
332,135 + EX28DRAFT_0361 0.88 -0.5
332,136 - EX28DRAFT_0361 0.89 +0.5
332,159 + +0.3
332,159 + -0.2
332,159 + -1.3
332,160 - +0.0
332,261 + +1.3
332,262 - +2.3
332,282 + +1.4
332,282 + -0.7
332,283 - +0.1
332,370 - -0.7
332,373 - +0.6
332,373 - -0.9
332,373 - -0.6
332,373 - -0.1
332,394 + +0.4
332,539 + EX28DRAFT_0362 0.15 -1.3
332,707 + EX28DRAFT_0362 0.31 -1.5
332,722 + EX28DRAFT_0362 0.33 -0.6
332,888 + EX28DRAFT_0362 0.48 -0.5
332,888 + EX28DRAFT_0362 0.48 +0.1
332,889 - EX28DRAFT_0362 0.48 -0.5
332,889 - EX28DRAFT_0362 0.48 -0.5
332,945 + EX28DRAFT_0362 0.54 +0.1
333,136 + EX28DRAFT_0362 0.72 -0.4
333,137 - EX28DRAFT_0362 0.72 +0.2
333,158 + EX28DRAFT_0362 0.74 -2.3
333,181 + EX28DRAFT_0362 0.76 -0.4
333,181 + EX28DRAFT_0362 0.76 -0.6
333,182 - EX28DRAFT_0362 0.76 -2.3
333,182 - EX28DRAFT_0362 0.76 -1.4
333,350 + -0.7
333,351 - -0.7
333,352 + +0.2
333,353 - -0.6
333,407 - -0.5
333,407 - -0.0
333,479 + -0.0
333,479 + +1.2
333,480 - -0.4
333,483 + -2.9
333,483 + +0.3
333,483 + +0.1
333,484 - -0.4
333,484 - -1.1
333,484 - -1.1
333,484 - +0.5
333,484 - +0.4
333,484 - -0.5
333,484 - +0.3
333,489 + +0.3
333,489 + +0.4
333,489 + +0.3
333,490 - -0.6
333,490 - -1.9
333,524 - -0.9
333,524 - -0.5
333,865 + EX28DRAFT_0363 0.34 +0.1
333,998 + EX28DRAFT_0363 0.46 +0.2
333,998 + EX28DRAFT_0363 0.46 +0.1
333,998 + EX28DRAFT_0363 0.46 -0.3
333,999 - EX28DRAFT_0363 0.47 -0.0
333,999 - EX28DRAFT_0363 0.47 +0.2
334,071 - EX28DRAFT_0363 0.53 -0.4
334,079 - EX28DRAFT_0363 0.54 +0.2
334,203 - EX28DRAFT_0363 0.66 +0.1
334,273 - EX28DRAFT_0363 0.72 +0.5

Or see this region's nucleotide sequence