Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0360

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0359 and EX28DRAFT_0360 are separated by 325 nucleotidesEX28DRAFT_0360 and EX28DRAFT_0361 are separated by 324 nucleotides EX28DRAFT_0359: EX28DRAFT_0359 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/Hpt domain, at 327,732 to 330,404 _0359 EX28DRAFT_0360: EX28DRAFT_0360 - RNA, at 330,730 to 330,823 _0360 EX28DRAFT_0361: EX28DRAFT_0361 - Outer membrane protein (porin), at 331,148 to 332,263 _0361 Position (kb) 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 329.765 kb on + strand, within EX28DRAFT_0359at 329.771 kb on - strand, within EX28DRAFT_0359at 329.965 kb on + strand, within EX28DRAFT_0359at 329.966 kb on - strand, within EX28DRAFT_0359at 329.968 kb on + strand, within EX28DRAFT_0359at 329.969 kb on - strand, within EX28DRAFT_0359at 329.969 kb on - strand, within EX28DRAFT_0359at 330.014 kb on - strand, within EX28DRAFT_0359at 330.069 kb on - strand, within EX28DRAFT_0359at 330.106 kb on + strand, within EX28DRAFT_0359at 330.107 kb on - strand, within EX28DRAFT_0359at 330.174 kb on - strandat 330.209 kb on + strandat 330.213 kb on + strandat 330.213 kb on + strandat 330.213 kb on + strandat 330.213 kb on + strandat 330.214 kb on - strandat 330.214 kb on - strandat 330.253 kb on + strandat 330.253 kb on + strandat 330.260 kb on + strandat 330.292 kb on - strandat 330.292 kb on - strandat 330.292 kb on - strandat 330.387 kb on - strandat 330.409 kb on - strandat 330.453 kb on + strandat 330.453 kb on + strandat 330.454 kb on - strandat 330.463 kb on + strandat 330.463 kb on + strandat 330.463 kb on + strandat 330.464 kb on - strandat 330.464 kb on - strandat 330.560 kb on - strandat 330.626 kb on - strandat 330.804 kb on + strand, within EX28DRAFT_0360at 330.805 kb on - strand, within EX28DRAFT_0360at 330.805 kb on - strand, within EX28DRAFT_0360at 330.805 kb on - strand, within EX28DRAFT_0360at 330.805 kb on - strand, within EX28DRAFT_0360at 330.829 kb on + strandat 330.963 kb on - strandat 331.119 kb on + strandat 331.121 kb on + strandat 331.121 kb on + strandat 331.129 kb on - strandat 331.129 kb on - strandat 331.130 kb on + strandat 331.130 kb on + strandat 331.130 kb on + strandat 331.131 kb on - strandat 331.131 kb on - strandat 331.131 kb on - strandat 331.131 kb on - strandat 331.145 kb on - strandat 331.156 kb on + strandat 331.162 kb on - strandat 331.162 kb on - strandat 331.162 kb on - strandat 331.242 kb on + strandat 331.243 kb on - strandat 331.274 kb on + strand, within EX28DRAFT_0361at 331.313 kb on + strand, within EX28DRAFT_0361at 331.313 kb on + strand, within EX28DRAFT_0361at 331.313 kb on + strand, within EX28DRAFT_0361at 331.313 kb on + strand, within EX28DRAFT_0361at 331.314 kb on - strand, within EX28DRAFT_0361at 331.487 kb on - strand, within EX28DRAFT_0361at 331.491 kb on - strand, within EX28DRAFT_0361at 331.510 kb on - strand, within EX28DRAFT_0361at 331.554 kb on - strand, within EX28DRAFT_0361at 331.656 kb on - strand, within EX28DRAFT_0361at 331.677 kb on + strand, within EX28DRAFT_0361at 331.748 kb on + strand, within EX28DRAFT_0361at 331.748 kb on + strand, within EX28DRAFT_0361at 331.749 kb on - strand, within EX28DRAFT_0361at 331.749 kb on - strand, within EX28DRAFT_0361

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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329,765 + EX28DRAFT_0359 0.76 -1.4
329,771 - EX28DRAFT_0359 0.76 -0.4
329,965 + EX28DRAFT_0359 0.84 +0.4
329,966 - EX28DRAFT_0359 0.84 +0.4
329,968 + EX28DRAFT_0359 0.84 -0.5
329,969 - EX28DRAFT_0359 0.84 -0.7
329,969 - EX28DRAFT_0359 0.84 +0.3
330,014 - EX28DRAFT_0359 0.85 -0.1
330,069 - EX28DRAFT_0359 0.87 -0.2
330,106 + EX28DRAFT_0359 0.89 +0.8
330,107 - EX28DRAFT_0359 0.89 -0.5
330,174 - -1.7
330,209 + -0.2
330,213 + -0.1
330,213 + -0.3
330,213 + +1.1
330,213 + +0.5
330,214 - +0.0
330,214 - -0.0
330,253 + -0.2
330,253 + -0.6
330,260 + -0.0
330,292 - +0.3
330,292 - +0.0
330,292 - +0.4
330,387 - -0.5
330,409 - +0.3
330,453 + -0.1
330,453 + +0.1
330,454 - +0.3
330,463 + -0.1
330,463 + -0.3
330,463 + -0.4
330,464 - -0.1
330,464 - -0.7
330,560 - -0.3
330,626 - +1.2
330,804 + EX28DRAFT_0360 0.79 -2.0
330,805 - EX28DRAFT_0360 0.80 +0.6
330,805 - EX28DRAFT_0360 0.80 -0.6
330,805 - EX28DRAFT_0360 0.80 -3.0
330,805 - EX28DRAFT_0360 0.80 -2.4
330,829 + -0.1
330,963 - +0.3
331,119 + +1.2
331,121 + -0.0
331,121 + +1.3
331,129 - -0.5
331,129 - -0.4
331,130 + -1.4
331,130 + +0.5
331,130 + -1.0
331,131 - -0.3
331,131 - +0.2
331,131 - -0.3
331,131 - +0.2
331,145 - -2.0
331,156 + +0.5
331,162 - +0.3
331,162 - +0.1
331,162 - -0.7
331,242 + -0.8
331,243 - -1.8
331,274 + EX28DRAFT_0361 0.11 +0.0
331,313 + EX28DRAFT_0361 0.15 -0.2
331,313 + EX28DRAFT_0361 0.15 +1.9
331,313 + EX28DRAFT_0361 0.15 -0.4
331,313 + EX28DRAFT_0361 0.15 -0.7
331,314 - EX28DRAFT_0361 0.15 -0.1
331,487 - EX28DRAFT_0361 0.30 -1.1
331,491 - EX28DRAFT_0361 0.31 -0.2
331,510 - EX28DRAFT_0361 0.32 -0.3
331,554 - EX28DRAFT_0361 0.36 -0.4
331,656 - EX28DRAFT_0361 0.46 -1.8
331,677 + EX28DRAFT_0361 0.47 +0.0
331,748 + EX28DRAFT_0361 0.54 -0.1
331,748 + EX28DRAFT_0361 0.54 -0.1
331,749 - EX28DRAFT_0361 0.54 -0.0
331,749 - EX28DRAFT_0361 0.54 +0.1

Or see this region's nucleotide sequence