Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0117 and EX28DRAFT_0118 are separated by 78 nucleotides EX28DRAFT_0118 and EX28DRAFT_0119 are separated by 17 nucleotides EX28DRAFT_0119 and EX28DRAFT_0120 overlap by 1 nucleotides
EX28DRAFT_0117: EX28DRAFT_0117 - Leucyl aminopeptidase, at 54,495 to 55,781
_0117
EX28DRAFT_0118: EX28DRAFT_0118 - SseB protein C-terminal domain/SseB protein N-terminal domain, at 55,860 to 56,636
_0118
EX28DRAFT_0119: EX28DRAFT_0119 - transcriptional regulator, RpiR family, at 56,654 to 57,424
_0119
EX28DRAFT_0120: EX28DRAFT_0120 - Rhodanese-related sulfurtransferase, at 57,424 to 58,272
_0120
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 54.964 kb on - strand, within EX28DRAFT_0117 at 54.964 kb on - strand, within EX28DRAFT_0117 at 55.058 kb on - strand, within EX28DRAFT_0117 at 55.224 kb on + strand, within EX28DRAFT_0117 at 55.224 kb on + strand, within EX28DRAFT_0117 at 55.225 kb on - strand, within EX28DRAFT_0117 at 55.225 kb on - strand, within EX28DRAFT_0117 at 55.656 kb on + strand at 55.780 kb on - strand at 55.859 kb on + strand at 55.882 kb on + strand at 56.201 kb on + strand, within EX28DRAFT_0118 at 56.388 kb on - strand, within EX28DRAFT_0118 at 56.513 kb on + strand, within EX28DRAFT_0118 at 56.555 kb on + strand, within EX28DRAFT_0118 at 56.858 kb on - strand, within EX28DRAFT_0119 at 56.935 kb on + strand, within EX28DRAFT_0119 at 56.962 kb on + strand, within EX28DRAFT_0119 at 57.120 kb on + strand, within EX28DRAFT_0119 at 57.120 kb on + strand, within EX28DRAFT_0119 at 57.120 kb on + strand, within EX28DRAFT_0119 at 57.121 kb on - strand, within EX28DRAFT_0119 at 57.121 kb on - strand, within EX28DRAFT_0119 at 57.367 kb on - strand at 57.367 kb on - strand at 57.425 kb on + strand at 57.580 kb on + strand, within EX28DRAFT_0120 at 57.581 kb on - strand, within EX28DRAFT_0120 at 57.581 kb on - strand, within EX28DRAFT_0120
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 54,964 - EX28DRAFT_0117 0.36 +0.3 54,964 - EX28DRAFT_0117 0.36 +0.7 55,058 - EX28DRAFT_0117 0.44 -0.8 55,224 + EX28DRAFT_0117 0.57 +0.1 55,224 + EX28DRAFT_0117 0.57 +0.5 55,225 - EX28DRAFT_0117 0.57 -0.3 55,225 - EX28DRAFT_0117 0.57 -0.6 55,656 + -0.6 55,780 - +0.1 55,859 + -0.2 55,882 + -0.0 56,201 + EX28DRAFT_0118 0.44 -2.3 56,388 - EX28DRAFT_0118 0.68 -0.4 56,513 + EX28DRAFT_0118 0.84 +0.0 56,555 + EX28DRAFT_0118 0.89 -1.1 56,858 - EX28DRAFT_0119 0.26 +0.8 56,935 + EX28DRAFT_0119 0.36 +0.8 56,962 + EX28DRAFT_0119 0.40 +0.3 57,120 + EX28DRAFT_0119 0.60 -2.4 57,120 + EX28DRAFT_0119 0.60 -0.4 57,120 + EX28DRAFT_0119 0.60 -0.5 57,121 - EX28DRAFT_0119 0.61 -0.6 57,121 - EX28DRAFT_0119 0.61 +1.2 57,367 - -0.6 57,367 - +1.0 57,425 + -0.4 57,580 + EX28DRAFT_0120 0.18 -0.3 57,581 - EX28DRAFT_0120 0.18 -0.3 57,581 - EX28DRAFT_0120 0.18 -0.7
Or see this region's nucleotide sequence