Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21495

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21490 and CA264_21495 are separated by 531 nucleotidesCA264_21495 and CA264_21500 are separated by 27 nucleotidesCA264_21500 and CA264_21505 are separated by 123 nucleotides CA264_21490: CA264_21490 - DUF4440 domain-containing protein, at 165,852 to 166,322 _21490 CA264_21495: CA264_21495 - copper-translocating P-type ATPase, at 166,854 to 168,911 _21495 CA264_21500: CA264_21500 - hypothetical protein, at 168,939 to 169,406 _21500 CA264_21505: CA264_21505 - hypothetical protein, at 169,530 to 170,258 _21505 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 165.874 kb on + strandat 165.889 kb on + strandat 165.927 kb on - strand, within CA264_21490at 165.964 kb on + strand, within CA264_21490at 165.965 kb on - strand, within CA264_21490at 165.972 kb on + strand, within CA264_21490at 166.011 kb on - strand, within CA264_21490at 166.034 kb on + strand, within CA264_21490at 166.039 kb on + strand, within CA264_21490at 166.058 kb on - strand, within CA264_21490at 166.069 kb on - strand, within CA264_21490at 166.077 kb on + strand, within CA264_21490at 166.078 kb on - strand, within CA264_21490at 166.078 kb on - strand, within CA264_21490at 166.124 kb on + strand, within CA264_21490at 166.125 kb on - strand, within CA264_21490at 166.137 kb on + strand, within CA264_21490at 166.137 kb on + strand, within CA264_21490at 166.137 kb on + strand, within CA264_21490at 166.137 kb on + strand, within CA264_21490at 166.144 kb on + strand, within CA264_21490at 166.144 kb on + strand, within CA264_21490at 166.145 kb on - strand, within CA264_21490at 166.145 kb on - strand, within CA264_21490at 166.188 kb on + strand, within CA264_21490at 166.189 kb on - strand, within CA264_21490at 166.194 kb on + strand, within CA264_21490at 166.194 kb on + strand, within CA264_21490at 166.194 kb on + strand, within CA264_21490at 166.195 kb on - strand, within CA264_21490at 166.195 kb on - strand, within CA264_21490at 166.195 kb on - strand, within CA264_21490at 166.195 kb on - strand, within CA264_21490at 166.195 kb on - strand, within CA264_21490at 166.199 kb on + strand, within CA264_21490at 166.199 kb on + strand, within CA264_21490at 166.199 kb on + strand, within CA264_21490at 166.200 kb on - strand, within CA264_21490at 166.200 kb on - strand, within CA264_21490at 166.202 kb on - strand, within CA264_21490at 166.202 kb on - strand, within CA264_21490at 166.202 kb on - strand, within CA264_21490at 166.221 kb on - strand, within CA264_21490at 166.224 kb on - strand, within CA264_21490at 166.247 kb on + strand, within CA264_21490at 166.253 kb on + strand, within CA264_21490at 166.254 kb on - strand, within CA264_21490at 166.289 kb on - strandat 166.289 kb on - strandat 166.294 kb on + strandat 166.295 kb on - strandat 166.354 kb on + strandat 166.388 kb on + strandat 166.388 kb on + strandat 166.388 kb on + strandat 166.389 kb on - strandat 166.451 kb on + strandat 166.483 kb on + strandat 166.524 kb on - strandat 166.613 kb on - strandat 166.620 kb on + strandat 166.620 kb on + strandat 166.621 kb on - strandat 166.622 kb on + strandat 166.701 kb on + strandat 166.707 kb on + strandat 166.750 kb on - strandat 166.796 kb on + strandat 166.797 kb on - strandat 167.077 kb on - strand, within CA264_21495at 167.095 kb on - strand, within CA264_21495at 167.097 kb on - strand, within CA264_21495at 167.102 kb on - strand, within CA264_21495at 167.116 kb on + strand, within CA264_21495at 167.116 kb on + strand, within CA264_21495at 167.140 kb on - strand, within CA264_21495at 167.230 kb on + strand, within CA264_21495at 167.230 kb on + strand, within CA264_21495at 167.231 kb on - strand, within CA264_21495at 167.231 kb on - strand, within CA264_21495at 167.235 kb on + strand, within CA264_21495at 167.235 kb on + strand, within CA264_21495at 167.236 kb on - strand, within CA264_21495at 167.236 kb on - strand, within CA264_21495at 167.241 kb on + strand, within CA264_21495at 167.321 kb on - strand, within CA264_21495at 167.641 kb on - strand, within CA264_21495at 167.751 kb on + strand, within CA264_21495at 167.751 kb on + strand, within CA264_21495at 167.751 kb on + strand, within CA264_21495at 167.752 kb on - strand, within CA264_21495at 167.752 kb on - strand, within CA264_21495at 167.752 kb on - strand, within CA264_21495at 167.752 kb on - strand, within CA264_21495at 167.752 kb on - strand, within CA264_21495at 167.777 kb on + strand, within CA264_21495at 167.825 kb on - strand, within CA264_21495at 167.946 kb on - strand, within CA264_21495at 167.972 kb on + strand, within CA264_21495at 167.981 kb on + strand, within CA264_21495at 167.982 kb on - strand, within CA264_21495at 168.113 kb on + strand, within CA264_21495at 168.125 kb on + strand, within CA264_21495at 168.183 kb on + strand, within CA264_21495at 168.184 kb on - strand, within CA264_21495at 168.230 kb on - strand, within CA264_21495at 168.249 kb on + strand, within CA264_21495at 168.250 kb on - strand, within CA264_21495at 168.315 kb on + strand, within CA264_21495at 168.315 kb on + strand, within CA264_21495at 168.315 kb on + strand, within CA264_21495at 168.316 kb on - strand, within CA264_21495at 168.347 kb on + strand, within CA264_21495at 168.490 kb on - strand, within CA264_21495at 168.502 kb on + strand, within CA264_21495at 168.502 kb on + strand, within CA264_21495at 168.502 kb on + strand, within CA264_21495at 168.564 kb on - strand, within CA264_21495at 168.667 kb on + strand, within CA264_21495at 168.667 kb on + strand, within CA264_21495at 168.667 kb on + strand, within CA264_21495at 168.668 kb on - strand, within CA264_21495at 168.668 kb on - strand, within CA264_21495at 168.767 kb on + strandat 168.768 kb on - strandat 168.804 kb on + strandat 168.804 kb on + strandat 168.815 kb on + strandat 168.818 kb on + strandat 168.848 kb on + strandat 168.848 kb on + strandat 168.849 kb on - strandat 168.849 kb on - strandat 168.910 kb on - strandat 168.934 kb on + strandat 168.935 kb on - strandat 168.935 kb on - strandat 168.938 kb on + strandat 168.939 kb on - strandat 168.939 kb on - strandat 168.939 kb on - strandat 168.939 kb on - strandat 168.939 kb on - strandat 169.004 kb on - strand, within CA264_21500at 169.051 kb on - strand, within CA264_21500at 169.059 kb on + strand, within CA264_21500at 169.059 kb on + strand, within CA264_21500at 169.059 kb on + strand, within CA264_21500at 169.060 kb on - strand, within CA264_21500at 169.106 kb on - strand, within CA264_21500at 169.108 kb on + strand, within CA264_21500at 169.154 kb on + strand, within CA264_21500at 169.154 kb on + strand, within CA264_21500at 169.178 kb on - strand, within CA264_21500at 169.197 kb on + strand, within CA264_21500at 169.198 kb on - strand, within CA264_21500at 169.198 kb on - strand, within CA264_21500at 169.262 kb on - strand, within CA264_21500at 169.276 kb on - strand, within CA264_21500at 169.276 kb on - strand, within CA264_21500at 169.276 kb on - strand, within CA264_21500at 169.276 kb on - strand, within CA264_21500at 169.278 kb on - strand, within CA264_21500at 169.297 kb on + strand, within CA264_21500at 169.297 kb on + strand, within CA264_21500at 169.337 kb on - strand, within CA264_21500at 169.503 kb on + strandat 169.508 kb on + strandat 169.508 kb on + strandat 169.512 kb on + strandat 169.632 kb on - strand, within CA264_21505at 169.719 kb on - strand, within CA264_21505at 169.737 kb on - strand, within CA264_21505at 169.737 kb on - strand, within CA264_21505at 169.809 kb on + strand, within CA264_21505at 169.826 kb on - strand, within CA264_21505at 169.826 kb on - strand, within CA264_21505at 169.874 kb on - strand, within CA264_21505

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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165,874 + -0.6
165,889 + -1.4
165,927 - CA264_21490 0.16 +0.0
165,964 + CA264_21490 0.24 +0.4
165,965 - CA264_21490 0.24 -0.0
165,972 + CA264_21490 0.25 -0.2
166,011 - CA264_21490 0.34 -1.5
166,034 + CA264_21490 0.39 -0.4
166,039 + CA264_21490 0.40 +1.5
166,058 - CA264_21490 0.44 -0.1
166,069 - CA264_21490 0.46 +0.6
166,077 + CA264_21490 0.48 -0.9
166,078 - CA264_21490 0.48 +0.7
166,078 - CA264_21490 0.48 -0.7
166,124 + CA264_21490 0.58 -0.9
166,125 - CA264_21490 0.58 -0.1
166,137 + CA264_21490 0.61 -1.0
166,137 + CA264_21490 0.61 +0.8
166,137 + CA264_21490 0.61 -1.7
166,137 + CA264_21490 0.61 -2.3
166,144 + CA264_21490 0.62 -2.3
166,144 + CA264_21490 0.62 -0.7
166,145 - CA264_21490 0.62 -0.4
166,145 - CA264_21490 0.62 +0.2
166,188 + CA264_21490 0.71 -0.8
166,189 - CA264_21490 0.72 -0.4
166,194 + CA264_21490 0.73 -0.1
166,194 + CA264_21490 0.73 +0.4
166,194 + CA264_21490 0.73 +0.4
166,195 - CA264_21490 0.73 +0.6
166,195 - CA264_21490 0.73 -0.1
166,195 - CA264_21490 0.73 -0.1
166,195 - CA264_21490 0.73 +0.0
166,195 - CA264_21490 0.73 -0.3
166,199 + CA264_21490 0.74 -1.3
166,199 + CA264_21490 0.74 -3.2
166,199 + CA264_21490 0.74 -0.7
166,200 - CA264_21490 0.74 +0.9
166,200 - CA264_21490 0.74 -1.0
166,202 - CA264_21490 0.74 +0.2
166,202 - CA264_21490 0.74 +0.2
166,202 - CA264_21490 0.74 +0.1
166,221 - CA264_21490 0.78 -0.2
166,224 - CA264_21490 0.79 -2.9
166,247 + CA264_21490 0.84 -2.1
166,253 + CA264_21490 0.85 -1.4
166,254 - CA264_21490 0.85 +1.2
166,289 - +1.5
166,289 - +0.9
166,294 + -1.5
166,295 - -1.0
166,354 + -0.5
166,388 + -0.5
166,388 + -2.3
166,388 + -3.8
166,389 - -1.3
166,451 + -0.8
166,483 + -0.2
166,524 - -0.7
166,613 - -1.3
166,620 + +0.6
166,620 + +1.0
166,621 - +0.5
166,622 + -1.1
166,701 + +0.2
166,707 + -1.0
166,750 - -0.7
166,796 + +1.9
166,797 - -1.2
167,077 - CA264_21495 0.11 -1.2
167,095 - CA264_21495 0.12 -0.0
167,097 - CA264_21495 0.12 +0.9
167,102 - CA264_21495 0.12 +0.4
167,116 + CA264_21495 0.13 -1.0
167,116 + CA264_21495 0.13 -2.8
167,140 - CA264_21495 0.14 -0.7
167,230 + CA264_21495 0.18 -0.4
167,230 + CA264_21495 0.18 +1.2
167,231 - CA264_21495 0.18 -0.4
167,231 - CA264_21495 0.18 +0.0
167,235 + CA264_21495 0.19 +0.2
167,235 + CA264_21495 0.19 -0.3
167,236 - CA264_21495 0.19 -0.3
167,236 - CA264_21495 0.19 -1.9
167,241 + CA264_21495 0.19 -0.5
167,321 - CA264_21495 0.23 -0.2
167,641 - CA264_21495 0.38 -0.6
167,751 + CA264_21495 0.44 -2.1
167,751 + CA264_21495 0.44 -1.0
167,751 + CA264_21495 0.44 -2.1
167,752 - CA264_21495 0.44 +0.2
167,752 - CA264_21495 0.44 -1.3
167,752 - CA264_21495 0.44 +0.9
167,752 - CA264_21495 0.44 -0.0
167,752 - CA264_21495 0.44 -0.1
167,777 + CA264_21495 0.45 +0.4
167,825 - CA264_21495 0.47 -1.4
167,946 - CA264_21495 0.53 -1.4
167,972 + CA264_21495 0.54 +1.6
167,981 + CA264_21495 0.55 -1.7
167,982 - CA264_21495 0.55 +1.3
168,113 + CA264_21495 0.61 +0.6
168,125 + CA264_21495 0.62 +1.3
168,183 + CA264_21495 0.65 -2.7
168,184 - CA264_21495 0.65 +1.9
168,230 - CA264_21495 0.67 -0.1
168,249 + CA264_21495 0.68 -0.2
168,250 - CA264_21495 0.68 +0.9
168,315 + CA264_21495 0.71 -1.8
168,315 + CA264_21495 0.71 -1.1
168,315 + CA264_21495 0.71 -0.2
168,316 - CA264_21495 0.71 -0.9
168,347 + CA264_21495 0.73 -1.0
168,490 - CA264_21495 0.79 +0.2
168,502 + CA264_21495 0.80 -3.2
168,502 + CA264_21495 0.80 -1.1
168,502 + CA264_21495 0.80 -1.6
168,564 - CA264_21495 0.83 +1.6
168,667 + CA264_21495 0.88 -0.4
168,667 + CA264_21495 0.88 -1.4
168,667 + CA264_21495 0.88 +0.8
168,668 - CA264_21495 0.88 +0.9
168,668 - CA264_21495 0.88 +1.4
168,767 + +1.4
168,768 - +0.6
168,804 + -0.6
168,804 + -1.2
168,815 + -0.3
168,818 + -1.3
168,848 + -0.1
168,848 + +1.1
168,849 - -0.0
168,849 - -0.9
168,910 - +1.2
168,934 + +0.9
168,935 - -0.7
168,935 - +1.0
168,938 + -1.2
168,939 - -0.7
168,939 - +0.3
168,939 - +0.0
168,939 - -0.1
168,939 - +0.0
169,004 - CA264_21500 0.14 +0.0
169,051 - CA264_21500 0.24 +0.4
169,059 + CA264_21500 0.26 +0.1
169,059 + CA264_21500 0.26 +0.3
169,059 + CA264_21500 0.26 -0.1
169,060 - CA264_21500 0.26 -1.6
169,106 - CA264_21500 0.36 -0.9
169,108 + CA264_21500 0.36 +0.2
169,154 + CA264_21500 0.46 -1.5
169,154 + CA264_21500 0.46 +0.8
169,178 - CA264_21500 0.51 -1.7
169,197 + CA264_21500 0.55 +0.2
169,198 - CA264_21500 0.55 -0.2
169,198 - CA264_21500 0.55 +1.5
169,262 - CA264_21500 0.69 +1.4
169,276 - CA264_21500 0.72 +1.8
169,276 - CA264_21500 0.72 +2.1
169,276 - CA264_21500 0.72 +0.4
169,276 - CA264_21500 0.72 -1.5
169,278 - CA264_21500 0.72 +0.4
169,297 + CA264_21500 0.76 -0.7
169,297 + CA264_21500 0.76 +0.1
169,337 - CA264_21500 0.85 -1.4
169,503 + -0.3
169,508 + -0.4
169,508 + +0.2
169,512 + -0.1
169,632 - CA264_21505 0.14 +0.4
169,719 - CA264_21505 0.26 +0.2
169,737 - CA264_21505 0.28 +0.0
169,737 - CA264_21505 0.28 +1.2
169,809 + CA264_21505 0.38 -2.2
169,826 - CA264_21505 0.41 +0.1
169,826 - CA264_21505 0.41 -0.9
169,874 - CA264_21505 0.47 -0.5

Or see this region's nucleotide sequence