Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20840

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20835 and CA264_20840 are separated by 156 nucleotidesCA264_20840 and CA264_20845 are separated by 134 nucleotidesCA264_20845 and CA264_20850 are separated by 47 nucleotides CA264_20835: CA264_20835 - hypothetical protein, at 26,253 to 27,875 _20835 CA264_20840: CA264_20840 - hypothetical protein, at 28,032 to 29,390 _20840 CA264_20845: CA264_20845 - hypothetical protein, at 29,525 to 29,764 _20845 CA264_20850: CA264_20850 - DsbA family protein, at 29,812 to 30,618 _20850 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 27.085 kb on + strand, within CA264_20835at 27.129 kb on - strand, within CA264_20835at 27.135 kb on - strand, within CA264_20835at 27.203 kb on + strand, within CA264_20835at 27.203 kb on + strand, within CA264_20835at 27.210 kb on - strand, within CA264_20835at 27.260 kb on + strand, within CA264_20835at 27.260 kb on + strand, within CA264_20835at 27.275 kb on - strand, within CA264_20835at 27.302 kb on + strand, within CA264_20835at 27.303 kb on - strand, within CA264_20835at 27.382 kb on + strand, within CA264_20835at 27.383 kb on - strand, within CA264_20835at 27.403 kb on + strand, within CA264_20835at 27.403 kb on + strand, within CA264_20835at 27.403 kb on + strand, within CA264_20835at 27.404 kb on - strand, within CA264_20835at 27.404 kb on - strand, within CA264_20835at 27.404 kb on - strand, within CA264_20835at 27.405 kb on + strand, within CA264_20835at 27.405 kb on + strand, within CA264_20835at 27.406 kb on - strand, within CA264_20835at 27.504 kb on + strand, within CA264_20835at 27.594 kb on - strand, within CA264_20835at 27.594 kb on - strand, within CA264_20835at 27.594 kb on - strand, within CA264_20835at 27.616 kb on + strand, within CA264_20835at 27.616 kb on + strand, within CA264_20835at 27.617 kb on - strand, within CA264_20835at 27.617 kb on - strand, within CA264_20835at 27.642 kb on + strand, within CA264_20835at 27.689 kb on + strand, within CA264_20835at 27.690 kb on - strand, within CA264_20835at 27.720 kb on + strandat 27.745 kb on - strandat 27.745 kb on - strandat 27.782 kb on + strandat 27.782 kb on + strandat 27.845 kb on - strandat 27.970 kb on - strandat 27.981 kb on - strandat 27.981 kb on - strandat 27.993 kb on - strandat 27.993 kb on - strandat 27.996 kb on + strandat 27.996 kb on + strandat 27.996 kb on + strandat 28.048 kb on - strandat 28.048 kb on - strandat 28.067 kb on + strandat 28.085 kb on + strandat 28.085 kb on + strandat 28.085 kb on + strandat 28.085 kb on + strandat 28.086 kb on - strandat 28.086 kb on - strandat 28.089 kb on + strandat 28.089 kb on + strandat 28.090 kb on - strandat 28.093 kb on - strandat 28.097 kb on - strandat 28.135 kb on + strandat 28.136 kb on - strandat 28.171 kb on + strand, within CA264_20840at 28.209 kb on + strand, within CA264_20840at 28.273 kb on + strand, within CA264_20840at 28.274 kb on - strand, within CA264_20840at 28.294 kb on + strand, within CA264_20840at 28.309 kb on + strand, within CA264_20840at 28.316 kb on - strand, within CA264_20840at 28.325 kb on + strand, within CA264_20840at 28.378 kb on - strand, within CA264_20840at 28.378 kb on - strand, within CA264_20840at 28.389 kb on + strand, within CA264_20840at 28.390 kb on - strand, within CA264_20840at 28.390 kb on - strand, within CA264_20840at 28.616 kb on - strand, within CA264_20840at 28.616 kb on - strand, within CA264_20840at 28.763 kb on - strand, within CA264_20840at 28.774 kb on - strand, within CA264_20840at 28.825 kb on + strand, within CA264_20840at 28.825 kb on + strand, within CA264_20840at 28.825 kb on + strand, within CA264_20840at 28.825 kb on + strand, within CA264_20840at 28.826 kb on - strand, within CA264_20840at 28.826 kb on - strand, within CA264_20840at 28.826 kb on - strand, within CA264_20840at 28.826 kb on - strand, within CA264_20840at 28.827 kb on + strand, within CA264_20840at 28.832 kb on - strand, within CA264_20840at 28.851 kb on + strand, within CA264_20840at 28.876 kb on + strand, within CA264_20840at 28.891 kb on + strand, within CA264_20840at 28.892 kb on - strand, within CA264_20840at 28.892 kb on - strand, within CA264_20840at 28.951 kb on + strand, within CA264_20840at 28.951 kb on + strand, within CA264_20840at 28.951 kb on + strand, within CA264_20840at 28.970 kb on + strand, within CA264_20840at 29.014 kb on + strand, within CA264_20840at 29.017 kb on + strand, within CA264_20840at 29.043 kb on - strand, within CA264_20840at 29.142 kb on + strand, within CA264_20840at 29.143 kb on - strand, within CA264_20840at 29.167 kb on - strand, within CA264_20840at 29.176 kb on - strand, within CA264_20840at 29.176 kb on - strand, within CA264_20840at 29.342 kb on - strandat 29.342 kb on - strandat 29.352 kb on + strandat 29.353 kb on - strandat 29.353 kb on - strandat 29.365 kb on - strandat 29.365 kb on - strandat 29.397 kb on - strandat 29.615 kb on + strand, within CA264_20845at 29.616 kb on - strand, within CA264_20845at 29.679 kb on - strand, within CA264_20845at 29.803 kb on - strandat 29.883 kb on - strandat 29.910 kb on + strand, within CA264_20850at 29.918 kb on - strand, within CA264_20850at 29.948 kb on - strand, within CA264_20850at 29.970 kb on - strand, within CA264_20850at 30.024 kb on + strand, within CA264_20850at 30.025 kb on - strand, within CA264_20850at 30.067 kb on + strand, within CA264_20850at 30.074 kb on - strand, within CA264_20850at 30.127 kb on + strand, within CA264_20850at 30.128 kb on - strand, within CA264_20850at 30.218 kb on - strand, within CA264_20850at 30.243 kb on - strand, within CA264_20850at 30.243 kb on - strand, within CA264_20850at 30.303 kb on - strand, within CA264_20850at 30.361 kb on - strand, within CA264_20850at 30.361 kb on - strand, within CA264_20850

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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27,085 + CA264_20835 0.51 -1.8
27,129 - CA264_20835 0.54 -2.0
27,135 - CA264_20835 0.54 +0.3
27,203 + CA264_20835 0.59 -0.7
27,203 + CA264_20835 0.59 -0.8
27,210 - CA264_20835 0.59 -1.4
27,260 + CA264_20835 0.62 +0.2
27,260 + CA264_20835 0.62 +1.2
27,275 - CA264_20835 0.63 -2.5
27,302 + CA264_20835 0.65 -0.4
27,303 - CA264_20835 0.65 -0.4
27,382 + CA264_20835 0.70 -1.0
27,383 - CA264_20835 0.70 -1.0
27,403 + CA264_20835 0.71 +1.0
27,403 + CA264_20835 0.71 -2.0
27,403 + CA264_20835 0.71 -0.3
27,404 - CA264_20835 0.71 -1.4
27,404 - CA264_20835 0.71 +0.0
27,404 - CA264_20835 0.71 -0.2
27,405 + CA264_20835 0.71 +1.4
27,405 + CA264_20835 0.71 -0.5
27,406 - CA264_20835 0.71 +0.0
27,504 + CA264_20835 0.77 -0.4
27,594 - CA264_20835 0.83 -3.1
27,594 - CA264_20835 0.83 +1.1
27,594 - CA264_20835 0.83 -0.1
27,616 + CA264_20835 0.84 +0.5
27,616 + CA264_20835 0.84 +0.5
27,617 - CA264_20835 0.84 -0.6
27,617 - CA264_20835 0.84 -0.5
27,642 + CA264_20835 0.86 +0.4
27,689 + CA264_20835 0.88 +1.2
27,690 - CA264_20835 0.89 -0.2
27,720 + -1.2
27,745 - -0.9
27,745 - -0.1
27,782 + +1.0
27,782 + +0.4
27,845 - -0.2
27,970 - -0.9
27,981 - +0.0
27,981 - -1.1
27,993 - +1.2
27,993 - -0.0
27,996 + +0.2
27,996 + -0.0
27,996 + -1.1
28,048 - -0.4
28,048 - -2.2
28,067 + +0.5
28,085 + -0.5
28,085 + +0.6
28,085 + -0.4
28,085 + +1.6
28,086 - -0.4
28,086 - -0.4
28,089 + -0.0
28,089 + +1.4
28,090 - +0.9
28,093 - -0.5
28,097 - -1.1
28,135 + -0.8
28,136 - +2.0
28,171 + CA264_20840 0.10 -0.4
28,209 + CA264_20840 0.13 -0.4
28,273 + CA264_20840 0.18 +1.2
28,274 - CA264_20840 0.18 +0.2
28,294 + CA264_20840 0.19 +1.6
28,309 + CA264_20840 0.20 -1.9
28,316 - CA264_20840 0.21 -2.0
28,325 + CA264_20840 0.22 +1.2
28,378 - CA264_20840 0.25 -1.9
28,378 - CA264_20840 0.25 -1.6
28,389 + CA264_20840 0.26 +0.2
28,390 - CA264_20840 0.26 -0.6
28,390 - CA264_20840 0.26 -2.1
28,616 - CA264_20840 0.43 -1.1
28,616 - CA264_20840 0.43 -2.5
28,763 - CA264_20840 0.54 -0.4
28,774 - CA264_20840 0.55 -0.8
28,825 + CA264_20840 0.58 +0.0
28,825 + CA264_20840 0.58 +0.0
28,825 + CA264_20840 0.58 -0.3
28,825 + CA264_20840 0.58 +0.1
28,826 - CA264_20840 0.58 +1.6
28,826 - CA264_20840 0.58 +0.2
28,826 - CA264_20840 0.58 -1.2
28,826 - CA264_20840 0.58 -1.5
28,827 + CA264_20840 0.58 -0.4
28,832 - CA264_20840 0.59 -2.6
28,851 + CA264_20840 0.60 -1.6
28,876 + CA264_20840 0.62 +0.1
28,891 + CA264_20840 0.63 -1.3
28,892 - CA264_20840 0.63 -1.7
28,892 - CA264_20840 0.63 -1.4
28,951 + CA264_20840 0.68 -0.3
28,951 + CA264_20840 0.68 +0.4
28,951 + CA264_20840 0.68 +1.2
28,970 + CA264_20840 0.69 -0.5
29,014 + CA264_20840 0.72 -0.7
29,017 + CA264_20840 0.72 +0.0
29,043 - CA264_20840 0.74 -1.3
29,142 + CA264_20840 0.82 +2.5
29,143 - CA264_20840 0.82 -0.6
29,167 - CA264_20840 0.84 -1.3
29,176 - CA264_20840 0.84 +0.2
29,176 - CA264_20840 0.84 -0.9
29,342 - +0.1
29,342 - +0.0
29,352 + -0.1
29,353 - -1.0
29,353 - +0.0
29,365 - -1.1
29,365 - -2.1
29,397 - +1.3
29,615 + CA264_20845 0.38 +3.0
29,616 - CA264_20845 0.38 -0.2
29,679 - CA264_20845 0.64 -0.0
29,803 - -1.3
29,883 - -0.8
29,910 + CA264_20850 0.12 +0.0
29,918 - CA264_20850 0.13 +0.2
29,948 - CA264_20850 0.17 +2.0
29,970 - CA264_20850 0.20 +0.0
30,024 + CA264_20850 0.26 +1.6
30,025 - CA264_20850 0.26 -1.2
30,067 + CA264_20850 0.32 -0.2
30,074 - CA264_20850 0.32 -0.6
30,127 + CA264_20850 0.39 +0.6
30,128 - CA264_20850 0.39 -0.9
30,218 - CA264_20850 0.50 +0.3
30,243 - CA264_20850 0.53 -1.2
30,243 - CA264_20850 0.53 -1.6
30,303 - CA264_20850 0.61 -0.9
30,361 - CA264_20850 0.68 +0.0
30,361 - CA264_20850 0.68 -0.5

Or see this region's nucleotide sequence