Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18930

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18925 and CA264_18930 are separated by 315 nucleotidesCA264_18930 and CA264_18935 are separated by 127 nucleotidesCA264_18935 and CA264_18940 are separated by 85 nucleotides CA264_18925: CA264_18925 - TetR family transcriptional regulator, at 4,394,638 to 4,395,324 _18925 CA264_18930: CA264_18930 - RNA helicase, at 4,395,640 to 4,396,905 _18930 CA264_18935: CA264_18935 - riboflavin biosynthesis protein RibD, at 4,397,033 to 4,397,578 _18935 CA264_18940: CA264_18940 - hypothetical protein, at 4,397,664 to 4,398,071 _18940 Position (kb) 4395 4396 4397Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4394.788 kb on + strand, within CA264_18925at 4394.788 kb on + strand, within CA264_18925at 4394.788 kb on + strand, within CA264_18925at 4394.865 kb on - strand, within CA264_18925at 4394.876 kb on + strand, within CA264_18925at 4394.910 kb on + strand, within CA264_18925at 4394.910 kb on + strand, within CA264_18925at 4394.910 kb on + strand, within CA264_18925at 4394.911 kb on - strand, within CA264_18925at 4394.915 kb on + strand, within CA264_18925at 4394.916 kb on - strand, within CA264_18925at 4394.917 kb on + strand, within CA264_18925at 4394.918 kb on - strand, within CA264_18925at 4394.918 kb on - strand, within CA264_18925at 4395.056 kb on - strand, within CA264_18925at 4395.108 kb on - strand, within CA264_18925at 4395.218 kb on - strand, within CA264_18925at 4395.278 kb on - strandat 4395.282 kb on - strandat 4395.320 kb on - strandat 4395.320 kb on - strandat 4395.320 kb on - strandat 4395.324 kb on + strandat 4395.324 kb on + strandat 4395.325 kb on - strandat 4395.325 kb on - strandat 4395.574 kb on + strandat 4395.574 kb on + strandat 4395.575 kb on - strandat 4395.575 kb on - strandat 4395.580 kb on + strandat 4395.580 kb on + strandat 4395.610 kb on + strandat 4395.610 kb on + strandat 4395.610 kb on + strandat 4395.611 kb on - strandat 4395.614 kb on + strandat 4395.624 kb on + strandat 4395.626 kb on + strandat 4395.627 kb on - strandat 4395.627 kb on - strandat 4395.630 kb on + strandat 4395.630 kb on + strandat 4395.675 kb on - strandat 4395.789 kb on + strand, within CA264_18930at 4395.789 kb on + strand, within CA264_18930at 4395.835 kb on - strand, within CA264_18930at 4395.948 kb on + strand, within CA264_18930at 4396.069 kb on - strand, within CA264_18930at 4396.070 kb on + strand, within CA264_18930at 4396.071 kb on - strand, within CA264_18930at 4396.135 kb on - strand, within CA264_18930at 4396.295 kb on + strand, within CA264_18930at 4396.295 kb on + strand, within CA264_18930at 4396.296 kb on - strand, within CA264_18930at 4396.454 kb on + strand, within CA264_18930at 4396.455 kb on - strand, within CA264_18930at 4396.460 kb on + strand, within CA264_18930at 4396.460 kb on + strand, within CA264_18930at 4396.460 kb on + strand, within CA264_18930at 4396.460 kb on + strand, within CA264_18930at 4396.461 kb on - strand, within CA264_18930at 4396.461 kb on - strand, within CA264_18930at 4396.510 kb on - strand, within CA264_18930at 4396.510 kb on - strand, within CA264_18930at 4396.583 kb on - strand, within CA264_18930at 4396.594 kb on + strand, within CA264_18930at 4396.769 kb on - strand, within CA264_18930at 4396.805 kb on - strandat 4397.035 kb on - strandat 4397.046 kb on - strandat 4397.052 kb on + strandat 4397.052 kb on + strandat 4397.057 kb on + strandat 4397.057 kb on + strandat 4397.154 kb on - strand, within CA264_18935at 4397.154 kb on - strand, within CA264_18935at 4397.154 kb on - strand, within CA264_18935at 4397.154 kb on - strand, within CA264_18935at 4397.154 kb on - strand, within CA264_18935at 4397.156 kb on + strand, within CA264_18935at 4397.156 kb on + strand, within CA264_18935at 4397.156 kb on + strand, within CA264_18935at 4397.157 kb on - strand, within CA264_18935at 4397.166 kb on + strand, within CA264_18935at 4397.166 kb on + strand, within CA264_18935at 4397.166 kb on + strand, within CA264_18935at 4397.167 kb on - strand, within CA264_18935at 4397.170 kb on + strand, within CA264_18935at 4397.170 kb on + strand, within CA264_18935at 4397.171 kb on - strand, within CA264_18935at 4397.171 kb on - strand, within CA264_18935at 4397.174 kb on + strand, within CA264_18935at 4397.186 kb on + strand, within CA264_18935at 4397.243 kb on - strand, within CA264_18935at 4397.273 kb on + strand, within CA264_18935at 4397.346 kb on + strand, within CA264_18935at 4397.346 kb on + strand, within CA264_18935at 4397.346 kb on + strand, within CA264_18935at 4397.347 kb on - strand, within CA264_18935at 4397.356 kb on + strand, within CA264_18935at 4397.357 kb on - strand, within CA264_18935at 4397.375 kb on + strand, within CA264_18935at 4397.417 kb on + strand, within CA264_18935at 4397.478 kb on + strand, within CA264_18935at 4397.479 kb on - strand, within CA264_18935at 4397.612 kb on + strandat 4397.612 kb on + strandat 4397.613 kb on - strandat 4397.613 kb on - strandat 4397.613 kb on - strandat 4397.617 kb on - strandat 4397.646 kb on + strandat 4397.669 kb on + strandat 4397.670 kb on - strandat 4397.696 kb on + strandat 4397.697 kb on - strandat 4397.697 kb on - strandat 4397.773 kb on + strand, within CA264_18940at 4397.773 kb on + strand, within CA264_18940at 4397.774 kb on - strand, within CA264_18940at 4397.774 kb on - strand, within CA264_18940at 4397.774 kb on - strand, within CA264_18940at 4397.889 kb on - strand, within CA264_18940at 4397.902 kb on + strand, within CA264_18940

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,394,788 + CA264_18925 0.22 +0.2
4,394,788 + CA264_18925 0.22 +2.5
4,394,788 + CA264_18925 0.22 +0.1
4,394,865 - CA264_18925 0.33 +0.5
4,394,876 + CA264_18925 0.35 -0.7
4,394,910 + CA264_18925 0.40 -0.7
4,394,910 + CA264_18925 0.40 -1.5
4,394,910 + CA264_18925 0.40 -1.3
4,394,911 - CA264_18925 0.40 +0.8
4,394,915 + CA264_18925 0.40 -1.5
4,394,916 - CA264_18925 0.40 -1.1
4,394,917 + CA264_18925 0.41 +1.1
4,394,918 - CA264_18925 0.41 +0.5
4,394,918 - CA264_18925 0.41 +0.2
4,395,056 - CA264_18925 0.61 +1.3
4,395,108 - CA264_18925 0.68 +0.9
4,395,218 - CA264_18925 0.84 -0.3
4,395,278 - -0.4
4,395,282 - -0.6
4,395,320 - +0.6
4,395,320 - +0.2
4,395,320 - +0.6
4,395,324 + +0.0
4,395,324 + +0.8
4,395,325 - -1.6
4,395,325 - -0.2
4,395,574 + -1.8
4,395,574 + -0.1
4,395,575 - -0.7
4,395,575 - -0.4
4,395,580 + -1.3
4,395,580 + -2.1
4,395,610 + -1.5
4,395,610 + -1.3
4,395,610 + -1.5
4,395,611 - +0.9
4,395,614 + -2.8
4,395,624 + +0.1
4,395,626 + +0.1
4,395,627 - +0.3
4,395,627 - +0.9
4,395,630 + -0.9
4,395,630 + -1.2
4,395,675 - +0.7
4,395,789 + CA264_18930 0.12 -0.5
4,395,789 + CA264_18930 0.12 -0.2
4,395,835 - CA264_18930 0.15 +0.7
4,395,948 + CA264_18930 0.24 -1.2
4,396,069 - CA264_18930 0.34 +1.6
4,396,070 + CA264_18930 0.34 +0.4
4,396,071 - CA264_18930 0.34 +1.1
4,396,135 - CA264_18930 0.39 +0.9
4,396,295 + CA264_18930 0.52 +0.1
4,396,295 + CA264_18930 0.52 +0.8
4,396,296 - CA264_18930 0.52 +0.8
4,396,454 + CA264_18930 0.64 +1.2
4,396,455 - CA264_18930 0.64 +1.6
4,396,460 + CA264_18930 0.65 +1.1
4,396,460 + CA264_18930 0.65 -1.2
4,396,460 + CA264_18930 0.65 +0.2
4,396,460 + CA264_18930 0.65 +0.5
4,396,461 - CA264_18930 0.65 +1.5
4,396,461 - CA264_18930 0.65 +1.4
4,396,510 - CA264_18930 0.69 +1.9
4,396,510 - CA264_18930 0.69 +0.8
4,396,583 - CA264_18930 0.74 +1.8
4,396,594 + CA264_18930 0.75 -0.7
4,396,769 - CA264_18930 0.89 +0.8
4,396,805 - +3.2
4,397,035 - +0.3
4,397,046 - +0.7
4,397,052 + -0.7
4,397,052 + +0.5
4,397,057 + -0.6
4,397,057 + +0.2
4,397,154 - CA264_18935 0.22 -1.8
4,397,154 - CA264_18935 0.22 -1.3
4,397,154 - CA264_18935 0.22 -1.5
4,397,154 - CA264_18935 0.22 +0.8
4,397,154 - CA264_18935 0.22 +0.3
4,397,156 + CA264_18935 0.23 -1.2
4,397,156 + CA264_18935 0.23 +0.1
4,397,156 + CA264_18935 0.23 -1.2
4,397,157 - CA264_18935 0.23 -1.0
4,397,166 + CA264_18935 0.24 -1.0
4,397,166 + CA264_18935 0.24 +0.1
4,397,166 + CA264_18935 0.24 +1.7
4,397,167 - CA264_18935 0.25 -0.6
4,397,170 + CA264_18935 0.25 -0.9
4,397,170 + CA264_18935 0.25 -1.7
4,397,171 - CA264_18935 0.25 -0.8
4,397,171 - CA264_18935 0.25 -1.9
4,397,174 + CA264_18935 0.26 -1.3
4,397,186 + CA264_18935 0.28 -1.2
4,397,243 - CA264_18935 0.38 +0.2
4,397,273 + CA264_18935 0.44 -1.6
4,397,346 + CA264_18935 0.57 +1.3
4,397,346 + CA264_18935 0.57 -1.3
4,397,346 + CA264_18935 0.57 -0.4
4,397,347 - CA264_18935 0.58 +0.3
4,397,356 + CA264_18935 0.59 -1.5
4,397,357 - CA264_18935 0.59 -0.7
4,397,375 + CA264_18935 0.63 -0.9
4,397,417 + CA264_18935 0.70 -2.5
4,397,478 + CA264_18935 0.82 -1.0
4,397,479 - CA264_18935 0.82 +0.6
4,397,612 + +2.7
4,397,612 + -0.7
4,397,613 - +0.6
4,397,613 - -0.2
4,397,613 - -1.0
4,397,617 - -0.0
4,397,646 + -2.3
4,397,669 + -2.4
4,397,670 - +0.5
4,397,696 + +0.3
4,397,697 - +0.1
4,397,697 - +0.4
4,397,773 + CA264_18940 0.27 -2.5
4,397,773 + CA264_18940 0.27 -1.6
4,397,774 - CA264_18940 0.27 +0.5
4,397,774 - CA264_18940 0.27 +0.7
4,397,774 - CA264_18940 0.27 +0.2
4,397,889 - CA264_18940 0.55 +0.7
4,397,902 + CA264_18940 0.58 -1.6

Or see this region's nucleotide sequence