Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18165

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18160 and CA264_18165 overlap by 4 nucleotidesCA264_18165 and CA264_18170 are separated by 214 nucleotidesCA264_18170 and CA264_18175 overlap by 4 nucleotides CA264_18160: CA264_18160 - hypothetical protein, at 4,223,727 to 4,224,632 _18160 CA264_18165: CA264_18165 - S1/P1 Nuclease, at 4,224,629 to 4,225,600 _18165 CA264_18170: CA264_18170 - peptide deformylase, at 4,225,815 to 4,226,384 _18170 CA264_18175: CA264_18175 - Holliday junction resolvase RuvX, at 4,226,381 to 4,226,797 _18175 Position (kb) 4224 4225 4226Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4223.633 kb on + strandat 4223.634 kb on - strandat 4223.634 kb on - strandat 4223.727 kb on - strandat 4223.727 kb on - strandat 4223.767 kb on - strandat 4223.844 kb on + strand, within CA264_18160at 4223.844 kb on + strand, within CA264_18160at 4223.844 kb on + strand, within CA264_18160at 4223.853 kb on + strand, within CA264_18160at 4223.854 kb on - strand, within CA264_18160at 4223.854 kb on - strand, within CA264_18160at 4223.854 kb on - strand, within CA264_18160at 4223.854 kb on - strand, within CA264_18160at 4223.854 kb on - strand, within CA264_18160at 4223.908 kb on + strand, within CA264_18160at 4223.909 kb on - strand, within CA264_18160at 4223.909 kb on - strand, within CA264_18160at 4223.909 kb on - strand, within CA264_18160at 4223.909 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.911 kb on - strand, within CA264_18160at 4223.944 kb on - strand, within CA264_18160at 4223.944 kb on - strand, within CA264_18160at 4224.046 kb on - strand, within CA264_18160at 4224.095 kb on - strand, within CA264_18160at 4224.174 kb on - strand, within CA264_18160at 4224.180 kb on + strand, within CA264_18160at 4224.321 kb on + strand, within CA264_18160at 4224.325 kb on - strand, within CA264_18160at 4224.326 kb on + strand, within CA264_18160at 4224.411 kb on + strand, within CA264_18160at 4224.442 kb on + strand, within CA264_18160at 4224.443 kb on - strand, within CA264_18160at 4224.496 kb on - strand, within CA264_18160at 4224.496 kb on - strand, within CA264_18160at 4224.522 kb on + strand, within CA264_18160at 4224.560 kb on - strandat 4224.561 kb on + strandat 4224.594 kb on - strandat 4224.775 kb on - strand, within CA264_18165at 4224.815 kb on + strand, within CA264_18165at 4224.828 kb on - strand, within CA264_18165at 4224.841 kb on - strand, within CA264_18165at 4224.901 kb on + strand, within CA264_18165at 4224.948 kb on + strand, within CA264_18165at 4224.949 kb on - strand, within CA264_18165at 4225.002 kb on - strand, within CA264_18165at 4225.021 kb on - strand, within CA264_18165at 4225.047 kb on + strand, within CA264_18165at 4225.094 kb on + strand, within CA264_18165at 4225.125 kb on + strand, within CA264_18165at 4225.125 kb on + strand, within CA264_18165at 4225.126 kb on - strand, within CA264_18165at 4225.126 kb on - strand, within CA264_18165at 4225.168 kb on - strand, within CA264_18165at 4225.275 kb on + strand, within CA264_18165at 4225.375 kb on - strand, within CA264_18165at 4225.439 kb on - strand, within CA264_18165at 4225.538 kb on - strandat 4225.612 kb on - strandat 4225.631 kb on - strandat 4225.631 kb on - strandat 4225.725 kb on + strandat 4225.725 kb on + strandat 4225.791 kb on + strandat 4225.798 kb on + strandat 4225.798 kb on + strandat 4225.799 kb on - strandat 4225.799 kb on - strandat 4225.803 kb on + strandat 4225.811 kb on + strandat 4225.852 kb on + strandat 4225.853 kb on - strandat 4226.386 kb on + strandat 4226.386 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,223,633 + +1.6
4,223,634 - +0.8
4,223,634 - +0.4
4,223,727 - +2.2
4,223,727 - -0.8
4,223,767 - -0.7
4,223,844 + CA264_18160 0.13 +0.4
4,223,844 + CA264_18160 0.13 +0.8
4,223,844 + CA264_18160 0.13 -0.2
4,223,853 + CA264_18160 0.14 -1.0
4,223,854 - CA264_18160 0.14 -0.8
4,223,854 - CA264_18160 0.14 -0.1
4,223,854 - CA264_18160 0.14 -1.0
4,223,854 - CA264_18160 0.14 -0.4
4,223,854 - CA264_18160 0.14 -1.1
4,223,908 + CA264_18160 0.20 -1.1
4,223,909 - CA264_18160 0.20 +1.1
4,223,909 - CA264_18160 0.20 -0.6
4,223,909 - CA264_18160 0.20 -1.1
4,223,909 - CA264_18160 0.20 -0.4
4,223,911 - CA264_18160 0.20 -2.5
4,223,911 - CA264_18160 0.20 +0.6
4,223,911 - CA264_18160 0.20 -0.5
4,223,911 - CA264_18160 0.20 -2.0
4,223,911 - CA264_18160 0.20 +1.0
4,223,911 - CA264_18160 0.20 +0.1
4,223,944 - CA264_18160 0.24 +1.0
4,223,944 - CA264_18160 0.24 -0.9
4,224,046 - CA264_18160 0.35 +0.8
4,224,095 - CA264_18160 0.41 -1.4
4,224,174 - CA264_18160 0.49 +0.8
4,224,180 + CA264_18160 0.50 -0.1
4,224,321 + CA264_18160 0.66 +0.5
4,224,325 - CA264_18160 0.66 +0.4
4,224,326 + CA264_18160 0.66 -0.6
4,224,411 + CA264_18160 0.75 +0.8
4,224,442 + CA264_18160 0.79 -0.4
4,224,443 - CA264_18160 0.79 -0.6
4,224,496 - CA264_18160 0.85 -0.1
4,224,496 - CA264_18160 0.85 -0.4
4,224,522 + CA264_18160 0.88 +0.4
4,224,560 - +0.7
4,224,561 + +1.4
4,224,594 - -0.7
4,224,775 - CA264_18165 0.15 -0.7
4,224,815 + CA264_18165 0.19 -1.1
4,224,828 - CA264_18165 0.20 -0.4
4,224,841 - CA264_18165 0.22 -0.2
4,224,901 + CA264_18165 0.28 +1.2
4,224,948 + CA264_18165 0.33 -0.6
4,224,949 - CA264_18165 0.33 +1.0
4,225,002 - CA264_18165 0.38 -0.1
4,225,021 - CA264_18165 0.40 -0.2
4,225,047 + CA264_18165 0.43 -1.1
4,225,094 + CA264_18165 0.48 -0.6
4,225,125 + CA264_18165 0.51 -0.1
4,225,125 + CA264_18165 0.51 -0.0
4,225,126 - CA264_18165 0.51 -0.5
4,225,126 - CA264_18165 0.51 -0.5
4,225,168 - CA264_18165 0.55 -1.0
4,225,275 + CA264_18165 0.66 -0.6
4,225,375 - CA264_18165 0.77 -0.9
4,225,439 - CA264_18165 0.83 +1.4
4,225,538 - -2.2
4,225,612 - -0.3
4,225,631 - -1.1
4,225,631 - -0.7
4,225,725 + +0.6
4,225,725 + -0.5
4,225,791 + +1.1
4,225,798 + +1.3
4,225,798 + -0.0
4,225,799 - +0.3
4,225,799 - -2.9
4,225,803 + -1.8
4,225,811 + +0.8
4,225,852 + -0.6
4,225,853 - -1.0
4,226,386 + -1.1
4,226,386 + -0.8

Or see this region's nucleotide sequence