Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17965

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17960 and CA264_17965 are separated by 271 nucleotidesCA264_17965 and CA264_17970 are separated by 24 nucleotides CA264_17960: CA264_17960 - proline--tRNA ligase, at 4,173,294 to 4,174,772 _17960 CA264_17965: CA264_17965 - hypothetical protein, at 4,175,044 to 4,176,150 _17965 CA264_17970: CA264_17970 - hypothetical protein, at 4,176,175 to 4,177,713 _17970 Position (kb) 4175 4176 4177Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4174.793 kb on + strandat 4174.793 kb on + strandat 4174.793 kb on + strandat 4174.794 kb on - strandat 4174.879 kb on + strandat 4174.880 kb on - strandat 4174.880 kb on - strandat 4174.882 kb on - strandat 4174.882 kb on - strandat 4174.882 kb on - strandat 4174.882 kb on - strandat 4174.886 kb on + strandat 4174.889 kb on + strandat 4174.919 kb on + strandat 4174.930 kb on + strandat 4174.930 kb on + strandat 4174.940 kb on + strandat 4175.060 kb on - strandat 4175.071 kb on + strandat 4175.071 kb on + strandat 4175.071 kb on + strandat 4175.071 kb on + strandat 4175.072 kb on - strandat 4175.098 kb on + strandat 4175.099 kb on - strandat 4175.143 kb on + strandat 4175.144 kb on - strandat 4175.215 kb on - strand, within CA264_17965at 4175.326 kb on + strand, within CA264_17965at 4175.326 kb on + strand, within CA264_17965at 4175.327 kb on - strand, within CA264_17965at 4175.347 kb on + strand, within CA264_17965at 4175.348 kb on - strand, within CA264_17965at 4175.382 kb on + strand, within CA264_17965at 4175.395 kb on + strand, within CA264_17965at 4175.396 kb on - strand, within CA264_17965at 4175.396 kb on - strand, within CA264_17965at 4175.399 kb on - strand, within CA264_17965at 4175.482 kb on + strand, within CA264_17965at 4175.497 kb on + strand, within CA264_17965at 4175.530 kb on - strand, within CA264_17965at 4175.540 kb on - strand, within CA264_17965at 4175.542 kb on + strand, within CA264_17965at 4175.543 kb on - strand, within CA264_17965at 4175.543 kb on - strand, within CA264_17965at 4175.554 kb on + strand, within CA264_17965at 4175.555 kb on - strand, within CA264_17965at 4175.575 kb on + strand, within CA264_17965at 4175.602 kb on + strand, within CA264_17965at 4175.647 kb on + strand, within CA264_17965at 4175.791 kb on - strand, within CA264_17965at 4175.795 kb on + strand, within CA264_17965at 4175.854 kb on - strand, within CA264_17965at 4175.976 kb on + strand, within CA264_17965at 4176.038 kb on - strand, within CA264_17965at 4176.148 kb on + strandat 4176.168 kb on - strandat 4176.262 kb on + strandat 4176.394 kb on - strand, within CA264_17970at 4176.448 kb on - strand, within CA264_17970at 4176.594 kb on + strand, within CA264_17970at 4176.635 kb on + strand, within CA264_17970at 4176.635 kb on + strand, within CA264_17970at 4176.636 kb on - strand, within CA264_17970at 4176.638 kb on + strand, within CA264_17970at 4176.639 kb on - strand, within CA264_17970at 4176.639 kb on - strand, within CA264_17970at 4176.639 kb on - strand, within CA264_17970at 4176.643 kb on + strand, within CA264_17970at 4176.644 kb on - strand, within CA264_17970at 4176.656 kb on + strandat 4176.714 kb on + strand, within CA264_17970at 4176.715 kb on - strand, within CA264_17970at 4176.715 kb on - strand, within CA264_17970at 4176.723 kb on - strand, within CA264_17970at 4176.776 kb on - strand, within CA264_17970at 4176.783 kb on - strand, within CA264_17970at 4176.869 kb on - strand, within CA264_17970at 4176.883 kb on + strand, within CA264_17970at 4176.887 kb on + strand, within CA264_17970at 4176.887 kb on + strand, within CA264_17970at 4176.888 kb on - strand, within CA264_17970at 4176.888 kb on - strand, within CA264_17970at 4176.908 kb on + strand, within CA264_17970at 4176.908 kb on + strand, within CA264_17970at 4176.909 kb on - strand, within CA264_17970at 4176.933 kb on + strand, within CA264_17970at 4176.933 kb on + strand, within CA264_17970at 4176.933 kb on + strand, within CA264_17970at 4177.096 kb on + strand, within CA264_17970at 4177.096 kb on + strand, within CA264_17970at 4177.097 kb on - strand, within CA264_17970at 4177.097 kb on - strand, within CA264_17970at 4177.097 kb on - strand, within CA264_17970

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,174,793 + +1.4
4,174,793 + +1.2
4,174,793 + +1.0
4,174,794 - -1.6
4,174,879 + -0.4
4,174,880 - -1.6
4,174,880 - -0.7
4,174,882 - -2.5
4,174,882 - -1.9
4,174,882 - +1.5
4,174,882 - +0.6
4,174,886 + +0.5
4,174,889 + +2.5
4,174,919 + +1.1
4,174,930 + -0.7
4,174,930 + +0.3
4,174,940 + -0.9
4,175,060 - +0.1
4,175,071 + -1.2
4,175,071 + +1.4
4,175,071 + +1.4
4,175,071 + -0.6
4,175,072 - -0.9
4,175,098 + +0.3
4,175,099 - -2.0
4,175,143 + -0.7
4,175,144 - +2.8
4,175,215 - CA264_17965 0.15 +1.2
4,175,326 + CA264_17965 0.25 -0.8
4,175,326 + CA264_17965 0.25 -0.5
4,175,327 - CA264_17965 0.26 -1.9
4,175,347 + CA264_17965 0.27 +2.2
4,175,348 - CA264_17965 0.27 -0.7
4,175,382 + CA264_17965 0.31 -0.1
4,175,395 + CA264_17965 0.32 -2.1
4,175,396 - CA264_17965 0.32 -0.6
4,175,396 - CA264_17965 0.32 -1.1
4,175,399 - CA264_17965 0.32 +2.6
4,175,482 + CA264_17965 0.40 -0.6
4,175,497 + CA264_17965 0.41 -2.1
4,175,530 - CA264_17965 0.44 -1.6
4,175,540 - CA264_17965 0.45 -1.4
4,175,542 + CA264_17965 0.45 -1.3
4,175,543 - CA264_17965 0.45 -1.4
4,175,543 - CA264_17965 0.45 -0.9
4,175,554 + CA264_17965 0.46 -0.6
4,175,555 - CA264_17965 0.46 -1.1
4,175,575 + CA264_17965 0.48 -1.1
4,175,602 + CA264_17965 0.50 +0.3
4,175,647 + CA264_17965 0.54 +1.5
4,175,791 - CA264_17965 0.67 -0.4
4,175,795 + CA264_17965 0.68 -1.2
4,175,854 - CA264_17965 0.73 +1.5
4,175,976 + CA264_17965 0.84 -0.9
4,176,038 - CA264_17965 0.90 -0.2
4,176,148 + -1.6
4,176,168 - -2.1
4,176,262 + -1.0
4,176,394 - CA264_17970 0.14 +0.3
4,176,448 - CA264_17970 0.18 -0.8
4,176,594 + CA264_17970 0.27 -0.0
4,176,635 + CA264_17970 0.30 +0.1
4,176,635 + CA264_17970 0.30 -0.5
4,176,636 - CA264_17970 0.30 -2.6
4,176,638 + CA264_17970 0.30 +0.8
4,176,639 - CA264_17970 0.30 -1.4
4,176,639 - CA264_17970 0.30 +1.8
4,176,639 - CA264_17970 0.30 -0.4
4,176,643 + CA264_17970 0.30 -0.5
4,176,644 - CA264_17970 0.30 -1.1
4,176,656 + +2.2
4,176,714 + CA264_17970 0.35 +1.7
4,176,715 - CA264_17970 0.35 -0.6
4,176,715 - CA264_17970 0.35 -1.0
4,176,723 - CA264_17970 0.36 -0.7
4,176,776 - CA264_17970 0.39 +0.5
4,176,783 - CA264_17970 0.40 +0.5
4,176,869 - CA264_17970 0.45 -0.1
4,176,883 + CA264_17970 0.46 -1.5
4,176,887 + CA264_17970 0.46 -0.1
4,176,887 + CA264_17970 0.46 -0.9
4,176,888 - CA264_17970 0.46 -1.0
4,176,888 - CA264_17970 0.46 +0.3
4,176,908 + CA264_17970 0.48 -0.8
4,176,908 + CA264_17970 0.48 -2.0
4,176,909 - CA264_17970 0.48 +0.3
4,176,933 + CA264_17970 0.49 -1.5
4,176,933 + CA264_17970 0.49 +0.1
4,176,933 + CA264_17970 0.49 +0.1
4,177,096 + CA264_17970 0.60 -0.7
4,177,096 + CA264_17970 0.60 +0.5
4,177,097 - CA264_17970 0.60 +1.3
4,177,097 - CA264_17970 0.60 +0.1
4,177,097 - CA264_17970 0.60 -0.9

Or see this region's nucleotide sequence