Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17810

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17795 and CA264_17800 are separated by 185 nucleotidesCA264_17800 and CA264_17805 are separated by 137 nucleotidesCA264_17805 and CA264_17810 are separated by 210 nucleotidesCA264_17810 and CA264_17815 are separated by 334 nucleotides CA264_17795: CA264_17795 - dephospho-CoA kinase, at 4,138,066 to 4,138,662 _17795 CA264_17800: CA264_17800 - tRNA-Val, at 4,138,848 to 4,138,922 _17800 CA264_17805: CA264_17805 - tRNA-Val, at 4,139,060 to 4,139,137 _17805 CA264_17810: CA264_17810 - hypothetical protein, at 4,139,348 to 4,141,834 _17810 CA264_17815: CA264_17815 - hypothetical protein, at 4,142,169 to 4,143,347 _17815 Position (kb) 4139 4140 4141 4142Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4138.732 kb on + strandat 4138.732 kb on + strandat 4138.732 kb on + strandat 4138.732 kb on + strandat 4138.741 kb on - strandat 4138.760 kb on + strandat 4138.760 kb on + strandat 4138.762 kb on + strandat 4138.762 kb on + strandat 4138.763 kb on - strandat 4138.763 kb on - strandat 4138.886 kb on + strand, within CA264_17800at 4138.887 kb on - strand, within CA264_17800at 4138.915 kb on - strandat 4138.915 kb on - strandat 4139.025 kb on - strandat 4139.254 kb on + strandat 4139.268 kb on + strandat 4139.268 kb on + strandat 4139.279 kb on + strandat 4139.294 kb on + strandat 4139.304 kb on + strandat 4139.408 kb on + strandat 4139.408 kb on + strandat 4139.408 kb on + strandat 4139.408 kb on + strandat 4139.408 kb on + strandat 4139.408 kb on + strandat 4139.408 kb on + strandat 4139.408 kb on + strandat 4139.409 kb on - strandat 4139.427 kb on + strandat 4139.509 kb on + strandat 4139.510 kb on - strandat 4139.608 kb on + strand, within CA264_17810at 4139.609 kb on - strand, within CA264_17810at 4139.649 kb on + strand, within CA264_17810at 4139.650 kb on - strand, within CA264_17810at 4139.650 kb on - strand, within CA264_17810at 4139.660 kb on + strand, within CA264_17810at 4139.682 kb on - strand, within CA264_17810at 4139.929 kb on - strand, within CA264_17810at 4140.011 kb on - strand, within CA264_17810at 4140.011 kb on - strand, within CA264_17810at 4140.011 kb on - strand, within CA264_17810at 4140.013 kb on + strand, within CA264_17810at 4140.033 kb on + strand, within CA264_17810at 4140.078 kb on - strand, within CA264_17810at 4140.161 kb on - strand, within CA264_17810at 4140.440 kb on + strand, within CA264_17810at 4140.440 kb on + strand, within CA264_17810at 4140.440 kb on + strand, within CA264_17810at 4140.461 kb on + strand, within CA264_17810at 4140.461 kb on + strand, within CA264_17810at 4140.462 kb on - strand, within CA264_17810at 4140.496 kb on - strand, within CA264_17810at 4140.496 kb on - strand, within CA264_17810at 4140.500 kb on + strand, within CA264_17810at 4140.500 kb on + strand, within CA264_17810at 4140.501 kb on - strand, within CA264_17810at 4140.501 kb on - strand, within CA264_17810at 4140.501 kb on - strand, within CA264_17810at 4140.502 kb on + strand, within CA264_17810at 4140.502 kb on + strand, within CA264_17810at 4140.502 kb on + strand, within CA264_17810at 4140.502 kb on + strand, within CA264_17810at 4140.503 kb on - strand, within CA264_17810at 4140.505 kb on - strand, within CA264_17810at 4140.857 kb on + strand, within CA264_17810at 4140.858 kb on - strand, within CA264_17810at 4140.863 kb on - strand, within CA264_17810at 4140.891 kb on + strand, within CA264_17810at 4140.934 kb on + strand, within CA264_17810at 4140.935 kb on - strand, within CA264_17810at 4141.051 kb on + strand, within CA264_17810at 4141.052 kb on - strand, within CA264_17810at 4141.132 kb on - strand, within CA264_17810at 4141.142 kb on - strand, within CA264_17810at 4141.155 kb on + strand, within CA264_17810at 4141.267 kb on - strand, within CA264_17810at 4141.360 kb on + strand, within CA264_17810at 4141.360 kb on + strand, within CA264_17810at 4141.459 kb on + strand, within CA264_17810at 4141.460 kb on - strand, within CA264_17810at 4141.462 kb on - strand, within CA264_17810at 4141.548 kb on - strand, within CA264_17810at 4141.548 kb on - strand, within CA264_17810at 4141.548 kb on - strand, within CA264_17810at 4141.548 kb on - strand, within CA264_17810at 4141.636 kb on + strandat 4141.636 kb on + strandat 4141.636 kb on + strandat 4141.637 kb on - strandat 4141.637 kb on - strandat 4141.637 kb on - strandat 4141.833 kb on - strandat 4141.833 kb on - strandat 4141.879 kb on + strandat 4141.979 kb on + strandat 4141.979 kb on + strandat 4141.979 kb on + strandat 4141.987 kb on + strandat 4142.032 kb on - strandat 4142.080 kb on + strandat 4142.080 kb on + strandat 4142.114 kb on + strandat 4142.120 kb on + strandat 4142.161 kb on - strandat 4142.170 kb on + strandat 4142.222 kb on + strandat 4142.222 kb on + strandat 4142.222 kb on + strandat 4142.223 kb on - strandat 4142.223 kb on - strandat 4142.245 kb on + strandat 4142.245 kb on + strandat 4142.298 kb on + strand, within CA264_17815at 4142.325 kb on - strand, within CA264_17815at 4142.365 kb on + strand, within CA264_17815at 4142.366 kb on - strand, within CA264_17815at 4142.449 kb on - strand, within CA264_17815at 4142.452 kb on + strand, within CA264_17815at 4142.452 kb on + strand, within CA264_17815at 4142.453 kb on - strand, within CA264_17815at 4142.460 kb on + strand, within CA264_17815at 4142.472 kb on - strand, within CA264_17815at 4142.503 kb on + strand, within CA264_17815at 4142.504 kb on - strand, within CA264_17815

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,138,732 + +0.6
4,138,732 + +1.6
4,138,732 + +1.1
4,138,732 + +0.7
4,138,741 - +0.2
4,138,760 + +1.0
4,138,760 + +1.6
4,138,762 + +0.9
4,138,762 + +1.0
4,138,763 - +2.2
4,138,763 - +2.4
4,138,886 + CA264_17800 0.51 +1.8
4,138,887 - CA264_17800 0.52 +0.2
4,138,915 - +4.4
4,138,915 - +0.5
4,139,025 - +1.5
4,139,254 + -0.9
4,139,268 + -0.1
4,139,268 + -0.8
4,139,279 + +0.5
4,139,294 + -0.0
4,139,304 + -0.5
4,139,408 + -1.2
4,139,408 + -0.7
4,139,408 + +0.2
4,139,408 + +0.2
4,139,408 + -0.3
4,139,408 + -1.1
4,139,408 + -0.7
4,139,408 + -1.6
4,139,409 - -2.2
4,139,427 + -1.5
4,139,509 + -0.5
4,139,510 - +0.4
4,139,608 + CA264_17810 0.10 +1.6
4,139,609 - CA264_17810 0.10 -0.3
4,139,649 + CA264_17810 0.12 -2.0
4,139,650 - CA264_17810 0.12 -0.9
4,139,650 - CA264_17810 0.12 -0.0
4,139,660 + CA264_17810 0.13 +1.8
4,139,682 - CA264_17810 0.13 -1.0
4,139,929 - CA264_17810 0.23 -2.0
4,140,011 - CA264_17810 0.27 +0.6
4,140,011 - CA264_17810 0.27 +0.3
4,140,011 - CA264_17810 0.27 +1.1
4,140,013 + CA264_17810 0.27 -2.0
4,140,033 + CA264_17810 0.28 -2.3
4,140,078 - CA264_17810 0.29 -0.5
4,140,161 - CA264_17810 0.33 -0.0
4,140,440 + CA264_17810 0.44 -1.3
4,140,440 + CA264_17810 0.44 +1.3
4,140,440 + CA264_17810 0.44 -1.6
4,140,461 + CA264_17810 0.45 -2.0
4,140,461 + CA264_17810 0.45 +1.2
4,140,462 - CA264_17810 0.45 -1.5
4,140,496 - CA264_17810 0.46 -0.7
4,140,496 - CA264_17810 0.46 -2.2
4,140,500 + CA264_17810 0.46 -0.6
4,140,500 + CA264_17810 0.46 -2.4
4,140,501 - CA264_17810 0.46 -0.7
4,140,501 - CA264_17810 0.46 -0.8
4,140,501 - CA264_17810 0.46 -2.2
4,140,502 + CA264_17810 0.46 -0.8
4,140,502 + CA264_17810 0.46 -1.1
4,140,502 + CA264_17810 0.46 +1.2
4,140,502 + CA264_17810 0.46 -1.9
4,140,503 - CA264_17810 0.46 -0.6
4,140,505 - CA264_17810 0.47 -1.3
4,140,857 + CA264_17810 0.61 -0.3
4,140,858 - CA264_17810 0.61 -0.6
4,140,863 - CA264_17810 0.61 +1.8
4,140,891 + CA264_17810 0.62 -0.7
4,140,934 + CA264_17810 0.64 -1.5
4,140,935 - CA264_17810 0.64 -2.7
4,141,051 + CA264_17810 0.68 +0.3
4,141,052 - CA264_17810 0.69 -0.7
4,141,132 - CA264_17810 0.72 -0.1
4,141,142 - CA264_17810 0.72 +1.0
4,141,155 + CA264_17810 0.73 -2.2
4,141,267 - CA264_17810 0.77 +0.7
4,141,360 + CA264_17810 0.81 -0.8
4,141,360 + CA264_17810 0.81 -2.5
4,141,459 + CA264_17810 0.85 -0.7
4,141,460 - CA264_17810 0.85 +1.4
4,141,462 - CA264_17810 0.85 -0.9
4,141,548 - CA264_17810 0.88 -0.6
4,141,548 - CA264_17810 0.88 -0.4
4,141,548 - CA264_17810 0.88 -1.2
4,141,548 - CA264_17810 0.88 -1.7
4,141,636 + -1.2
4,141,636 + +1.5
4,141,636 + +0.1
4,141,637 - -0.8
4,141,637 - +0.3
4,141,637 - -0.8
4,141,833 - -0.1
4,141,833 - -0.9
4,141,879 + -1.2
4,141,979 + -0.1
4,141,979 + +2.6
4,141,979 + -1.8
4,141,987 + -1.3
4,142,032 - +0.2
4,142,080 + -0.8
4,142,080 + -1.0
4,142,114 + -3.3
4,142,120 + -1.3
4,142,161 - -1.4
4,142,170 + -1.1
4,142,222 + +1.3
4,142,222 + +0.6
4,142,222 + +1.5
4,142,223 - +1.2
4,142,223 - -0.8
4,142,245 + +0.2
4,142,245 + +0.9
4,142,298 + CA264_17815 0.11 +3.8
4,142,325 - CA264_17815 0.13 -2.4
4,142,365 + CA264_17815 0.17 +0.0
4,142,366 - CA264_17815 0.17 -3.4
4,142,449 - CA264_17815 0.24 -2.7
4,142,452 + CA264_17815 0.24 +0.3
4,142,452 + CA264_17815 0.24 +2.7
4,142,453 - CA264_17815 0.24 -1.6
4,142,460 + CA264_17815 0.25 -0.7
4,142,472 - CA264_17815 0.26 -0.8
4,142,503 + CA264_17815 0.28 +0.5
4,142,504 - CA264_17815 0.28 -2.5

Or see this region's nucleotide sequence