Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17245

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17235 and CA264_17240 are separated by 66 nucleotidesCA264_17240 and CA264_17245 are separated by 298 nucleotidesCA264_17245 and CA264_17250 are separated by 135 nucleotidesCA264_17250 and CA264_17255 are separated by 155 nucleotides CA264_17235: CA264_17235 - gliding motility lipoprotein GldJ, at 4,009,340 to 4,010,569 _17235 CA264_17240: CA264_17240 - hypothetical protein, at 4,010,636 to 4,011,112 _17240 CA264_17245: CA264_17245 - malate:quinone oxidoreductase, at 4,011,411 to 4,012,925 _17245 CA264_17250: CA264_17250 - competence protein, at 4,013,061 to 4,013,687 _17250 CA264_17255: CA264_17255 - carboxymuconolactone decarboxylase family protein, at 4,013,843 to 4,014,196 _17255 Position (kb) 4011 4012 4013Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4010.463 kb on + strandat 4010.463 kb on + strandat 4010.464 kb on - strandat 4010.464 kb on - strandat 4010.568 kb on - strandat 4010.578 kb on + strandat 4010.579 kb on - strandat 4010.579 kb on - strandat 4010.583 kb on + strandat 4010.583 kb on + strandat 4010.584 kb on - strandat 4010.584 kb on - strandat 4010.584 kb on - strandat 4010.584 kb on - strandat 4010.584 kb on - strandat 4010.584 kb on - strandat 4010.584 kb on - strandat 4010.584 kb on - strandat 4010.586 kb on + strandat 4010.588 kb on + strandat 4010.621 kb on - strandat 4010.626 kb on + strandat 4010.626 kb on + strandat 4010.627 kb on - strandat 4010.633 kb on + strandat 4010.633 kb on + strandat 4010.633 kb on + strandat 4010.633 kb on + strandat 4010.633 kb on + strandat 4010.634 kb on - strandat 4010.660 kb on - strandat 4010.660 kb on - strandat 4010.757 kb on + strand, within CA264_17240at 4010.757 kb on + strand, within CA264_17240at 4010.757 kb on + strand, within CA264_17240at 4010.786 kb on - strand, within CA264_17240at 4010.881 kb on - strand, within CA264_17240at 4010.944 kb on - strand, within CA264_17240at 4011.057 kb on + strand, within CA264_17240at 4011.058 kb on - strand, within CA264_17240at 4011.062 kb on + strand, within CA264_17240at 4011.063 kb on - strand, within CA264_17240at 4011.063 kb on - strand, within CA264_17240at 4011.117 kb on - strandat 4011.173 kb on - strandat 4011.213 kb on - strandat 4011.234 kb on - strandat 4011.234 kb on - strandat 4011.274 kb on - strandat 4011.280 kb on - strandat 4011.293 kb on + strandat 4011.412 kb on + strandat 4011.452 kb on + strandat 4011.456 kb on - strandat 4011.456 kb on - strandat 4011.456 kb on - strandat 4011.456 kb on - strandat 4011.457 kb on + strandat 4011.457 kb on + strandat 4011.458 kb on - strandat 4011.458 kb on - strandat 4011.458 kb on - strandat 4011.465 kb on + strandat 4011.466 kb on - strandat 4011.466 kb on - strandat 4011.466 kb on - strandat 4011.567 kb on - strand, within CA264_17245at 4011.597 kb on - strand, within CA264_17245at 4011.745 kb on - strand, within CA264_17245at 4011.745 kb on - strand, within CA264_17245at 4011.899 kb on + strand, within CA264_17245at 4011.900 kb on - strand, within CA264_17245at 4012.051 kb on + strand, within CA264_17245at 4012.051 kb on + strand, within CA264_17245at 4012.052 kb on - strand, within CA264_17245at 4012.054 kb on - strand, within CA264_17245at 4012.201 kb on + strand, within CA264_17245at 4012.201 kb on + strand, within CA264_17245at 4012.210 kb on + strand, within CA264_17245at 4012.341 kb on - strand, within CA264_17245at 4012.544 kb on + strand, within CA264_17245at 4012.575 kb on + strand, within CA264_17245at 4012.576 kb on - strand, within CA264_17245at 4012.576 kb on - strand, within CA264_17245at 4012.584 kb on - strand, within CA264_17245at 4012.606 kb on - strand, within CA264_17245at 4012.607 kb on + strand, within CA264_17245at 4012.788 kb on + strandat 4012.817 kb on + strandat 4012.817 kb on + strandat 4012.926 kb on - strandat 4012.928 kb on + strandat 4012.928 kb on + strandat 4012.929 kb on - strandat 4012.929 kb on - strandat 4012.942 kb on + strandat 4012.979 kb on - strandat 4013.007 kb on - strandat 4013.062 kb on + strandat 4013.089 kb on - strandat 4013.356 kb on + strand, within CA264_17250at 4013.356 kb on + strand, within CA264_17250at 4013.422 kb on + strand, within CA264_17250at 4013.491 kb on + strand, within CA264_17250at 4013.491 kb on + strand, within CA264_17250at 4013.492 kb on - strand, within CA264_17250at 4013.534 kb on + strand, within CA264_17250at 4013.535 kb on - strand, within CA264_17250at 4013.546 kb on - strand, within CA264_17250at 4013.646 kb on + strandat 4013.647 kb on - strandat 4013.668 kb on + strandat 4013.669 kb on - strandat 4013.669 kb on - strandat 4013.669 kb on - strandat 4013.766 kb on + strandat 4013.767 kb on - strandat 4013.772 kb on - strandat 4013.772 kb on - strandat 4013.796 kb on + strandat 4013.798 kb on + strandat 4013.798 kb on + strandat 4013.834 kb on + strandat 4013.835 kb on - strandat 4013.838 kb on + strandat 4013.838 kb on + strandat 4013.839 kb on - strandat 4013.850 kb on + strandat 4013.851 kb on - strandat 4013.853 kb on + strandat 4013.854 kb on - strandat 4013.870 kb on + strandat 4013.896 kb on + strand, within CA264_17255at 4013.896 kb on + strand, within CA264_17255at 4013.896 kb on + strand, within CA264_17255at 4013.897 kb on - strand, within CA264_17255

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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4,010,463 + +0.2
4,010,463 + -0.7
4,010,464 - +0.7
4,010,464 - -1.4
4,010,568 - -3.3
4,010,578 + -1.6
4,010,579 - -2.7
4,010,579 - +0.7
4,010,583 + +1.1
4,010,583 + -2.7
4,010,584 - -2.0
4,010,584 - -2.3
4,010,584 - -2.6
4,010,584 - +0.4
4,010,584 - +0.7
4,010,584 - -2.5
4,010,584 - -3.4
4,010,584 - -3.6
4,010,586 + +0.0
4,010,588 + -0.9
4,010,621 - -2.5
4,010,626 + -1.5
4,010,626 + -0.5
4,010,627 - -2.6
4,010,633 + -0.1
4,010,633 + -0.2
4,010,633 + -0.7
4,010,633 + -1.3
4,010,633 + -0.4
4,010,634 - -2.4
4,010,660 - -2.2
4,010,660 - -2.5
4,010,757 + CA264_17240 0.25 -0.2
4,010,757 + CA264_17240 0.25 +0.7
4,010,757 + CA264_17240 0.25 +1.0
4,010,786 - CA264_17240 0.31 -2.7
4,010,881 - CA264_17240 0.51 -1.3
4,010,944 - CA264_17240 0.65 +0.2
4,011,057 + CA264_17240 0.88 -1.2
4,011,058 - CA264_17240 0.88 +0.0
4,011,062 + CA264_17240 0.89 -0.6
4,011,063 - CA264_17240 0.90 -1.3
4,011,063 - CA264_17240 0.90 -1.7
4,011,117 - +0.5
4,011,173 - +2.0
4,011,213 - -1.2
4,011,234 - -0.5
4,011,234 - +0.6
4,011,274 - -0.3
4,011,280 - -0.8
4,011,293 + +0.1
4,011,412 + +0.2
4,011,452 + +0.7
4,011,456 - -3.1
4,011,456 - -3.1
4,011,456 - -0.8
4,011,456 - -0.4
4,011,457 + +0.1
4,011,457 + -1.1
4,011,458 - +0.5
4,011,458 - -1.9
4,011,458 - -1.9
4,011,465 + +1.3
4,011,466 - -3.5
4,011,466 - -1.3
4,011,466 - -2.0
4,011,567 - CA264_17245 0.10 -1.8
4,011,597 - CA264_17245 0.12 +0.7
4,011,745 - CA264_17245 0.22 -0.4
4,011,745 - CA264_17245 0.22 -0.9
4,011,899 + CA264_17245 0.32 +0.7
4,011,900 - CA264_17245 0.32 +0.7
4,012,051 + CA264_17245 0.42 +1.3
4,012,051 + CA264_17245 0.42 +1.4
4,012,052 - CA264_17245 0.42 -2.1
4,012,054 - CA264_17245 0.42 +0.6
4,012,201 + CA264_17245 0.52 +2.4
4,012,201 + CA264_17245 0.52 +1.2
4,012,210 + CA264_17245 0.53 +2.4
4,012,341 - CA264_17245 0.61 +1.0
4,012,544 + CA264_17245 0.75 +1.1
4,012,575 + CA264_17245 0.77 -0.5
4,012,576 - CA264_17245 0.77 -0.1
4,012,576 - CA264_17245 0.77 -0.3
4,012,584 - CA264_17245 0.77 +1.1
4,012,606 - CA264_17245 0.79 +0.7
4,012,607 + CA264_17245 0.79 -0.4
4,012,788 + +1.4
4,012,817 + +1.3
4,012,817 + +0.7
4,012,926 - -0.1
4,012,928 + -0.3
4,012,928 + -0.3
4,012,929 - -0.1
4,012,929 - +0.0
4,012,942 + +0.3
4,012,979 - -1.7
4,013,007 - -1.3
4,013,062 + +0.7
4,013,089 - -0.6
4,013,356 + CA264_17250 0.47 -2.6
4,013,356 + CA264_17250 0.47 +0.0
4,013,422 + CA264_17250 0.58 +0.1
4,013,491 + CA264_17250 0.69 -1.2
4,013,491 + CA264_17250 0.69 -0.2
4,013,492 - CA264_17250 0.69 -0.3
4,013,534 + CA264_17250 0.75 +0.7
4,013,535 - CA264_17250 0.76 -0.6
4,013,546 - CA264_17250 0.77 -1.0
4,013,646 + -1.0
4,013,647 - -1.0
4,013,668 + -0.7
4,013,669 - +2.1
4,013,669 - +0.5
4,013,669 - -0.7
4,013,766 + +1.1
4,013,767 - -0.1
4,013,772 - -0.2
4,013,772 - -1.0
4,013,796 + -1.7
4,013,798 + +0.6
4,013,798 + -0.4
4,013,834 + -1.3
4,013,835 - +0.2
4,013,838 + -0.5
4,013,838 + +0.3
4,013,839 - +0.4
4,013,850 + -0.2
4,013,851 - -2.0
4,013,853 + +0.5
4,013,854 - -1.5
4,013,870 + +0.2
4,013,896 + CA264_17255 0.15 -2.4
4,013,896 + CA264_17255 0.15 +0.8
4,013,896 + CA264_17255 0.15 -0.3
4,013,897 - CA264_17255 0.15 -0.1

Or see this region's nucleotide sequence