Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17170

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_17165 and CA264_17170 are separated by 208 nucleotidesCA264_17170 and CA264_17175 are separated by 131 nucleotides CA264_17165: CA264_17165 - hypothetical protein, at 3,996,533 to 3,997,462 _17165 CA264_17170: CA264_17170 - N-acetyltransferase, at 3,997,671 to 3,998,201 _17170 CA264_17175: CA264_17175 - 23S rRNA (adenine(1618)-N(6))-methyltransferase, at 3,998,333 to 3,999,325 _17175 Position (kb) 3997 3998 3999Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3996.718 kb on + strand, within CA264_17165at 3996.719 kb on - strand, within CA264_17165at 3996.719 kb on - strand, within CA264_17165at 3996.719 kb on - strand, within CA264_17165at 3996.736 kb on + strand, within CA264_17165at 3996.738 kb on + strand, within CA264_17165at 3996.738 kb on + strand, within CA264_17165at 3996.781 kb on + strand, within CA264_17165at 3996.781 kb on + strand, within CA264_17165at 3996.781 kb on + strand, within CA264_17165at 3996.798 kb on - strand, within CA264_17165at 3996.801 kb on + strand, within CA264_17165at 3996.848 kb on + strand, within CA264_17165at 3996.902 kb on - strand, within CA264_17165at 3996.995 kb on + strand, within CA264_17165at 3996.996 kb on - strand, within CA264_17165at 3996.999 kb on - strand, within CA264_17165at 3997.000 kb on + strand, within CA264_17165at 3997.000 kb on + strand, within CA264_17165at 3997.000 kb on + strand, within CA264_17165at 3997.000 kb on + strand, within CA264_17165at 3997.001 kb on - strand, within CA264_17165at 3997.035 kb on + strand, within CA264_17165at 3997.134 kb on + strand, within CA264_17165at 3997.245 kb on - strand, within CA264_17165at 3997.245 kb on - strand, within CA264_17165at 3997.254 kb on + strand, within CA264_17165at 3997.277 kb on - strand, within CA264_17165at 3997.335 kb on + strand, within CA264_17165at 3997.350 kb on + strand, within CA264_17165at 3997.361 kb on + strand, within CA264_17165at 3997.370 kb on + strandat 3997.371 kb on - strandat 3997.410 kb on + strandat 3997.491 kb on + strandat 3997.491 kb on + strandat 3997.504 kb on + strandat 3997.505 kb on - strandat 3997.505 kb on - strandat 3997.505 kb on - strandat 3997.561 kb on + strandat 3997.583 kb on - strandat 3997.583 kb on - strandat 3997.591 kb on - strandat 3997.635 kb on + strandat 3997.636 kb on - strandat 3997.671 kb on - strandat 3997.713 kb on + strandat 3997.714 kb on - strandat 3997.732 kb on - strand, within CA264_17170at 3997.732 kb on - strand, within CA264_17170at 3997.788 kb on - strand, within CA264_17170at 3997.820 kb on - strand, within CA264_17170at 3997.822 kb on + strand, within CA264_17170at 3997.823 kb on - strand, within CA264_17170at 3997.874 kb on - strand, within CA264_17170at 3997.879 kb on - strand, within CA264_17170at 3997.882 kb on + strand, within CA264_17170at 3997.882 kb on + strand, within CA264_17170at 3997.936 kb on + strand, within CA264_17170at 3997.937 kb on - strand, within CA264_17170at 3997.937 kb on - strand, within CA264_17170at 3997.939 kb on + strand, within CA264_17170at 3997.939 kb on + strand, within CA264_17170at 3997.940 kb on - strand, within CA264_17170at 3997.940 kb on - strand, within CA264_17170at 3997.950 kb on - strand, within CA264_17170at 3997.950 kb on - strand, within CA264_17170at 3998.064 kb on + strand, within CA264_17170at 3998.080 kb on - strand, within CA264_17170at 3998.132 kb on + strand, within CA264_17170at 3998.133 kb on - strand, within CA264_17170at 3998.200 kb on - strandat 3998.200 kb on - strandat 3998.216 kb on + strandat 3998.216 kb on + strandat 3998.216 kb on + strandat 3998.220 kb on + strandat 3998.220 kb on + strandat 3998.221 kb on - strandat 3998.221 kb on - strandat 3998.221 kb on - strandat 3998.221 kb on - strandat 3998.223 kb on - strandat 3998.223 kb on - strandat 3998.223 kb on - strandat 3998.252 kb on + strandat 3998.254 kb on + strandat 3998.254 kb on + strandat 3998.255 kb on - strandat 3998.255 kb on - strandat 3998.259 kb on - strandat 3998.260 kb on + strandat 3998.293 kb on + strandat 3998.327 kb on - strandat 3998.327 kb on - strandat 3998.443 kb on - strand, within CA264_17175at 3998.611 kb on + strand, within CA264_17175at 3998.613 kb on + strand, within CA264_17175at 3998.614 kb on - strand, within CA264_17175at 3998.663 kb on - strand, within CA264_17175at 3998.676 kb on + strand, within CA264_17175at 3998.753 kb on - strand, within CA264_17175at 3998.809 kb on + strand, within CA264_17175at 3998.812 kb on + strand, within CA264_17175at 3998.812 kb on + strand, within CA264_17175at 3998.838 kb on + strand, within CA264_17175at 3998.839 kb on - strand, within CA264_17175at 3998.880 kb on + strand, within CA264_17175at 3998.881 kb on - strand, within CA264_17175at 3998.915 kb on - strand, within CA264_17175at 3998.961 kb on + strand, within CA264_17175at 3999.010 kb on - strand, within CA264_17175at 3999.057 kb on + strand, within CA264_17175at 3999.058 kb on - strand, within CA264_17175at 3999.168 kb on + strand, within CA264_17175at 3999.168 kb on + strand, within CA264_17175

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
3,996,718 + CA264_17165 0.20 +0.3
3,996,719 - CA264_17165 0.20 +1.1
3,996,719 - CA264_17165 0.20 -1.0
3,996,719 - CA264_17165 0.20 +0.0
3,996,736 + CA264_17165 0.22 -1.6
3,996,738 + CA264_17165 0.22 -0.1
3,996,738 + CA264_17165 0.22 +0.2
3,996,781 + CA264_17165 0.27 +0.1
3,996,781 + CA264_17165 0.27 +0.3
3,996,781 + CA264_17165 0.27 -1.3
3,996,798 - CA264_17165 0.28 +1.1
3,996,801 + CA264_17165 0.29 -0.5
3,996,848 + CA264_17165 0.34 -0.3
3,996,902 - CA264_17165 0.40 +1.5
3,996,995 + CA264_17165 0.50 +2.0
3,996,996 - CA264_17165 0.50 -0.5
3,996,999 - CA264_17165 0.50 +1.8
3,997,000 + CA264_17165 0.50 -1.1
3,997,000 + CA264_17165 0.50 +0.0
3,997,000 + CA264_17165 0.50 -1.5
3,997,000 + CA264_17165 0.50 -1.8
3,997,001 - CA264_17165 0.50 +2.3
3,997,035 + CA264_17165 0.54 +0.2
3,997,134 + CA264_17165 0.65 +1.2
3,997,245 - CA264_17165 0.77 -0.0
3,997,245 - CA264_17165 0.77 +1.7
3,997,254 + CA264_17165 0.78 -2.1
3,997,277 - CA264_17165 0.80 -0.8
3,997,335 + CA264_17165 0.86 -0.9
3,997,350 + CA264_17165 0.88 -0.7
3,997,361 + CA264_17165 0.89 -0.7
3,997,370 + +0.5
3,997,371 - -0.2
3,997,410 + -1.3
3,997,491 + +1.0
3,997,491 + +0.6
3,997,504 + +0.5
3,997,505 - +0.5
3,997,505 - +2.0
3,997,505 - +1.6
3,997,561 + +0.5
3,997,583 - +0.6
3,997,583 - +0.0
3,997,591 - -0.9
3,997,635 + -1.5
3,997,636 - +0.8
3,997,671 - -1.2
3,997,713 + +0.8
3,997,714 - +0.4
3,997,732 - CA264_17170 0.11 +0.9
3,997,732 - CA264_17170 0.11 +0.1
3,997,788 - CA264_17170 0.22 +1.3
3,997,820 - CA264_17170 0.28 +1.2
3,997,822 + CA264_17170 0.28 -1.3
3,997,823 - CA264_17170 0.29 +0.9
3,997,874 - CA264_17170 0.38 +0.7
3,997,879 - CA264_17170 0.39 +1.0
3,997,882 + CA264_17170 0.40 +0.9
3,997,882 + CA264_17170 0.40 +0.8
3,997,936 + CA264_17170 0.50 +1.4
3,997,937 - CA264_17170 0.50 -0.3
3,997,937 - CA264_17170 0.50 +1.5
3,997,939 + CA264_17170 0.50 +0.4
3,997,939 + CA264_17170 0.50 +0.4
3,997,940 - CA264_17170 0.51 +1.1
3,997,940 - CA264_17170 0.51 +0.6
3,997,950 - CA264_17170 0.53 -0.3
3,997,950 - CA264_17170 0.53 +1.0
3,998,064 + CA264_17170 0.74 +0.9
3,998,080 - CA264_17170 0.77 +0.3
3,998,132 + CA264_17170 0.87 -0.3
3,998,133 - CA264_17170 0.87 -0.4
3,998,200 - +0.4
3,998,200 - -0.3
3,998,216 + +0.4
3,998,216 + -1.7
3,998,216 + +0.3
3,998,220 + +1.4
3,998,220 + +0.6
3,998,221 - -0.2
3,998,221 - +0.2
3,998,221 - -0.8
3,998,221 - +0.2
3,998,223 - -0.6
3,998,223 - -0.6
3,998,223 - +0.2
3,998,252 + -0.8
3,998,254 + +4.7
3,998,254 + +2.7
3,998,255 - -0.3
3,998,255 - +2.0
3,998,259 - -0.0
3,998,260 + -1.5
3,998,293 + -1.7
3,998,327 - +0.4
3,998,327 - +2.1
3,998,443 - CA264_17175 0.11 +0.1
3,998,611 + CA264_17175 0.28 +0.5
3,998,613 + CA264_17175 0.28 -1.1
3,998,614 - CA264_17175 0.28 +0.4
3,998,663 - CA264_17175 0.33 +2.9
3,998,676 + CA264_17175 0.35 -1.0
3,998,753 - CA264_17175 0.42 -0.5
3,998,809 + CA264_17175 0.48 +0.2
3,998,812 + CA264_17175 0.48 -0.5
3,998,812 + CA264_17175 0.48 +0.9
3,998,838 + CA264_17175 0.51 -1.5
3,998,839 - CA264_17175 0.51 +0.4
3,998,880 + CA264_17175 0.55 -0.2
3,998,881 - CA264_17175 0.55 -0.0
3,998,915 - CA264_17175 0.59 +1.1
3,998,961 + CA264_17175 0.63 -0.4
3,999,010 - CA264_17175 0.68 -1.0
3,999,057 + CA264_17175 0.73 -1.1
3,999,058 - CA264_17175 0.73 -1.3
3,999,168 + CA264_17175 0.84 -0.5
3,999,168 + CA264_17175 0.84 -0.9

Or see this region's nucleotide sequence