Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16200

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16190 and CA264_16195 are separated by 172 nucleotidesCA264_16195 and CA264_16200 are separated by 199 nucleotidesCA264_16200 and CA264_16205 are separated by 116 nucleotidesCA264_16205 and CA264_16210 are separated by 439 nucleotides CA264_16190: CA264_16190 - hypothetical protein, at 3,768,244 to 3,769,446 _16190 CA264_16195: CA264_16195 - hypothetical protein, at 3,769,619 to 3,770,008 _16195 CA264_16200: CA264_16200 - hypothetical protein, at 3,770,208 to 3,770,387 _16200 CA264_16205: CA264_16205 - hypothetical protein, at 3,770,504 to 3,770,911 _16205 CA264_16210: CA264_16210 - thioredoxin family protein, at 3,771,351 to 3,771,983 _16210 Position (kb) 3770 3771Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3769.259 kb on + strand, within CA264_16190at 3769.327 kb on + strandat 3769.345 kb on - strandat 3769.432 kb on + strandat 3769.433 kb on - strandat 3769.451 kb on - strandat 3769.455 kb on + strandat 3769.456 kb on - strandat 3769.462 kb on - strandat 3769.466 kb on + strandat 3769.467 kb on - strandat 3769.477 kb on + strandat 3769.514 kb on - strandat 3769.514 kb on - strandat 3769.517 kb on + strandat 3769.518 kb on - strandat 3769.525 kb on - strandat 3769.525 kb on - strandat 3769.529 kb on + strandat 3769.533 kb on - strandat 3769.581 kb on - strandat 3769.598 kb on - strandat 3769.645 kb on + strandat 3769.700 kb on + strand, within CA264_16195at 3769.705 kb on + strand, within CA264_16195at 3769.706 kb on - strand, within CA264_16195at 3769.746 kb on + strand, within CA264_16195at 3769.759 kb on + strand, within CA264_16195at 3769.769 kb on + strand, within CA264_16195at 3769.817 kb on + strand, within CA264_16195at 3769.821 kb on + strand, within CA264_16195at 3769.822 kb on - strand, within CA264_16195at 3769.825 kb on + strand, within CA264_16195at 3769.881 kb on - strand, within CA264_16195at 3769.934 kb on - strand, within CA264_16195at 3769.935 kb on + strand, within CA264_16195at 3769.936 kb on - strand, within CA264_16195at 3769.941 kb on + strand, within CA264_16195at 3769.941 kb on + strand, within CA264_16195at 3769.942 kb on - strand, within CA264_16195at 3769.961 kb on + strand, within CA264_16195at 3769.982 kb on - strandat 3769.982 kb on - strandat 3770.060 kb on + strandat 3770.097 kb on + strandat 3770.186 kb on + strandat 3770.186 kb on + strandat 3770.187 kb on - strandat 3770.191 kb on - strandat 3770.252 kb on + strand, within CA264_16200at 3770.253 kb on - strand, within CA264_16200at 3770.256 kb on + strand, within CA264_16200at 3770.256 kb on + strand, within CA264_16200at 3770.257 kb on - strand, within CA264_16200at 3770.257 kb on - strand, within CA264_16200at 3770.257 kb on - strand, within CA264_16200at 3770.258 kb on + strand, within CA264_16200at 3770.259 kb on - strand, within CA264_16200at 3770.259 kb on - strand, within CA264_16200at 3770.259 kb on - strand, within CA264_16200at 3770.309 kb on - strand, within CA264_16200at 3770.309 kb on - strand, within CA264_16200at 3770.350 kb on - strand, within CA264_16200at 3770.375 kb on + strandat 3770.392 kb on - strandat 3770.426 kb on + strandat 3770.484 kb on + strandat 3770.510 kb on - strandat 3770.548 kb on + strand, within CA264_16205at 3770.548 kb on + strand, within CA264_16205at 3770.549 kb on - strand, within CA264_16205at 3770.555 kb on - strand, within CA264_16205at 3770.558 kb on + strand, within CA264_16205at 3770.558 kb on + strand, within CA264_16205at 3770.559 kb on - strand, within CA264_16205at 3770.562 kb on - strand, within CA264_16205at 3770.570 kb on + strand, within CA264_16205at 3770.571 kb on - strand, within CA264_16205at 3770.571 kb on - strand, within CA264_16205at 3770.635 kb on - strand, within CA264_16205at 3770.658 kb on - strand, within CA264_16205at 3770.659 kb on + strand, within CA264_16205at 3770.663 kb on + strand, within CA264_16205at 3770.664 kb on - strand, within CA264_16205at 3770.667 kb on - strand, within CA264_16205at 3770.683 kb on + strand, within CA264_16205at 3770.699 kb on + strand, within CA264_16205at 3770.700 kb on - strand, within CA264_16205at 3770.732 kb on + strand, within CA264_16205at 3770.734 kb on + strand, within CA264_16205at 3770.734 kb on + strand, within CA264_16205at 3770.750 kb on + strand, within CA264_16205at 3770.750 kb on + strand, within CA264_16205at 3770.751 kb on - strand, within CA264_16205at 3770.752 kb on + strand, within CA264_16205at 3770.753 kb on - strand, within CA264_16205at 3770.756 kb on + strand, within CA264_16205at 3770.756 kb on + strand, within CA264_16205at 3770.757 kb on - strand, within CA264_16205at 3770.763 kb on - strand, within CA264_16205at 3770.843 kb on - strand, within CA264_16205at 3770.867 kb on + strand, within CA264_16205at 3770.868 kb on - strand, within CA264_16205at 3770.886 kb on - strandat 3770.886 kb on - strandat 3770.911 kb on + strandat 3770.912 kb on - strandat 3770.931 kb on + strandat 3770.937 kb on - strandat 3770.937 kb on - strandat 3770.937 kb on - strandat 3770.938 kb on + strandat 3770.940 kb on + strandat 3770.968 kb on + strandat 3770.968 kb on + strandat 3770.969 kb on - strandat 3770.969 kb on - strandat 3770.995 kb on - strandat 3770.995 kb on - strandat 3771.026 kb on - strandat 3771.146 kb on + strandat 3771.162 kb on - strandat 3771.162 kb on - strandat 3771.167 kb on + strandat 3771.232 kb on - strandat 3771.246 kb on - strandat 3771.272 kb on + strandat 3771.274 kb on + strandat 3771.317 kb on + strandat 3771.317 kb on + strandat 3771.317 kb on + strandat 3771.343 kb on + strandat 3771.344 kb on - strandat 3771.344 kb on - strandat 3771.347 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,769,259 + CA264_16190 0.84 +1.0
3,769,327 + +2.2
3,769,345 - -0.4
3,769,432 + +0.6
3,769,433 - +0.3
3,769,451 - -0.2
3,769,455 + +1.6
3,769,456 - -1.0
3,769,462 - +0.2
3,769,466 + -0.9
3,769,467 - -1.5
3,769,477 + +0.9
3,769,514 - -0.6
3,769,514 - +0.3
3,769,517 + +1.4
3,769,518 - -2.9
3,769,525 - +1.3
3,769,525 - +1.3
3,769,529 + +0.3
3,769,533 - +0.4
3,769,581 - +1.3
3,769,598 - +0.8
3,769,645 + -0.0
3,769,700 + CA264_16195 0.21 +3.4
3,769,705 + CA264_16195 0.22 +2.1
3,769,706 - CA264_16195 0.22 +3.2
3,769,746 + CA264_16195 0.33 -0.9
3,769,759 + CA264_16195 0.36 +1.3
3,769,769 + CA264_16195 0.38 +0.9
3,769,817 + CA264_16195 0.51 +0.0
3,769,821 + CA264_16195 0.52 -0.6
3,769,822 - CA264_16195 0.52 -0.2
3,769,825 + CA264_16195 0.53 -1.0
3,769,881 - CA264_16195 0.67 +0.1
3,769,934 - CA264_16195 0.81 -0.3
3,769,935 + CA264_16195 0.81 +1.1
3,769,936 - CA264_16195 0.81 +2.2
3,769,941 + CA264_16195 0.83 -1.7
3,769,941 + CA264_16195 0.83 -0.4
3,769,942 - CA264_16195 0.83 -0.5
3,769,961 + CA264_16195 0.88 +1.2
3,769,982 - -1.4
3,769,982 - -0.0
3,770,060 + -1.0
3,770,097 + +0.1
3,770,186 + -1.5
3,770,186 + +0.4
3,770,187 - -0.2
3,770,191 - -1.5
3,770,252 + CA264_16200 0.24 +0.9
3,770,253 - CA264_16200 0.25 -0.4
3,770,256 + CA264_16200 0.27 -1.5
3,770,256 + CA264_16200 0.27 -1.5
3,770,257 - CA264_16200 0.27 -0.1
3,770,257 - CA264_16200 0.27 +0.8
3,770,257 - CA264_16200 0.27 -0.6
3,770,258 + CA264_16200 0.28 -0.4
3,770,259 - CA264_16200 0.28 +1.3
3,770,259 - CA264_16200 0.28 +0.2
3,770,259 - CA264_16200 0.28 +0.3
3,770,309 - CA264_16200 0.56 -0.1
3,770,309 - CA264_16200 0.56 +0.5
3,770,350 - CA264_16200 0.79 +1.1
3,770,375 + -0.8
3,770,392 - -1.8
3,770,426 + +0.8
3,770,484 + -2.2
3,770,510 - -0.5
3,770,548 + CA264_16205 0.11 -1.4
3,770,548 + CA264_16205 0.11 -0.8
3,770,549 - CA264_16205 0.11 -0.0
3,770,555 - CA264_16205 0.12 -2.9
3,770,558 + CA264_16205 0.13 -0.5
3,770,558 + CA264_16205 0.13 -0.2
3,770,559 - CA264_16205 0.13 +0.5
3,770,562 - CA264_16205 0.14 +0.1
3,770,570 + CA264_16205 0.16 +0.6
3,770,571 - CA264_16205 0.16 +1.3
3,770,571 - CA264_16205 0.16 +0.8
3,770,635 - CA264_16205 0.32 +0.0
3,770,658 - CA264_16205 0.38 -0.2
3,770,659 + CA264_16205 0.38 -1.6
3,770,663 + CA264_16205 0.39 -1.7
3,770,664 - CA264_16205 0.39 +0.3
3,770,667 - CA264_16205 0.40 +0.3
3,770,683 + CA264_16205 0.44 -1.3
3,770,699 + CA264_16205 0.48 -0.8
3,770,700 - CA264_16205 0.48 -0.9
3,770,732 + CA264_16205 0.56 -1.7
3,770,734 + CA264_16205 0.56 +1.6
3,770,734 + CA264_16205 0.56 +0.6
3,770,750 + CA264_16205 0.60 -0.5
3,770,750 + CA264_16205 0.60 -0.5
3,770,751 - CA264_16205 0.61 +0.5
3,770,752 + CA264_16205 0.61 +0.6
3,770,753 - CA264_16205 0.61 +1.0
3,770,756 + CA264_16205 0.62 +1.2
3,770,756 + CA264_16205 0.62 +0.5
3,770,757 - CA264_16205 0.62 -0.6
3,770,763 - CA264_16205 0.63 +1.3
3,770,843 - CA264_16205 0.83 +0.2
3,770,867 + CA264_16205 0.89 -1.2
3,770,868 - CA264_16205 0.89 -0.3
3,770,886 - +2.1
3,770,886 - -0.8
3,770,911 + -1.7
3,770,912 - -0.4
3,770,931 + -1.2
3,770,937 - +0.8
3,770,937 - +1.3
3,770,937 - +1.1
3,770,938 + -1.6
3,770,940 + +0.2
3,770,968 + -1.1
3,770,968 + -2.8
3,770,969 - -0.2
3,770,969 - -0.2
3,770,995 - +1.0
3,770,995 - +0.7
3,771,026 - +0.4
3,771,146 + -1.4
3,771,162 - +0.8
3,771,162 - +1.6
3,771,167 + -0.7
3,771,232 - -1.0
3,771,246 - +0.6
3,771,272 + -0.4
3,771,274 + +0.6
3,771,317 + +0.1
3,771,317 + -0.0
3,771,317 + +2.1
3,771,343 + -0.2
3,771,344 - +1.3
3,771,344 - -2.5
3,771,347 + -0.0

Or see this region's nucleotide sequence