Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15480

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15475 and CA264_15480 are separated by 36 nucleotidesCA264_15480 and CA264_15485 are separated by 70 nucleotidesCA264_15485 and CA264_15490 are separated by 74 nucleotides CA264_15475: CA264_15475 - hypothetical protein, at 3,626,000 to 3,627,520 _15475 CA264_15480: CA264_15480 - hypothetical protein, at 3,627,557 to 3,627,919 _15480 CA264_15485: CA264_15485 - hypothetical protein, at 3,627,990 to 3,628,436 _15485 CA264_15490: CA264_15490 - hypothetical protein, at 3,628,511 to 3,629,599 _15490 Position (kb) 3627 3628Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3626.594 kb on + strand, within CA264_15475at 3626.642 kb on + strand, within CA264_15475at 3626.642 kb on + strand, within CA264_15475at 3626.643 kb on - strand, within CA264_15475at 3626.643 kb on - strand, within CA264_15475at 3626.643 kb on - strand, within CA264_15475at 3626.671 kb on + strand, within CA264_15475at 3626.671 kb on + strand, within CA264_15475at 3626.672 kb on - strand, within CA264_15475at 3626.730 kb on - strand, within CA264_15475at 3626.961 kb on + strand, within CA264_15475at 3627.074 kb on - strand, within CA264_15475at 3627.076 kb on + strand, within CA264_15475at 3627.077 kb on - strand, within CA264_15475at 3627.192 kb on - strand, within CA264_15475at 3627.192 kb on - strand, within CA264_15475at 3627.348 kb on - strand, within CA264_15475at 3627.348 kb on - strand, within CA264_15475at 3627.362 kb on + strand, within CA264_15475at 3627.375 kb on + strandat 3627.434 kb on + strandat 3627.434 kb on + strandat 3627.620 kb on + strand, within CA264_15480at 3627.620 kb on + strand, within CA264_15480at 3627.620 kb on + strand, within CA264_15480at 3627.620 kb on + strand, within CA264_15480at 3627.621 kb on - strand, within CA264_15480at 3627.666 kb on - strand, within CA264_15480at 3627.666 kb on - strand, within CA264_15480at 3627.666 kb on - strand, within CA264_15480at 3627.673 kb on + strand, within CA264_15480at 3627.674 kb on - strand, within CA264_15480at 3627.674 kb on - strand, within CA264_15480at 3627.886 kb on + strandat 3627.917 kb on + strandat 3627.918 kb on - strandat 3628.021 kb on - strandat 3628.054 kb on + strand, within CA264_15485at 3628.129 kb on + strand, within CA264_15485at 3628.130 kb on - strand, within CA264_15485at 3628.131 kb on + strand, within CA264_15485at 3628.250 kb on + strand, within CA264_15485at 3628.250 kb on + strand, within CA264_15485at 3628.251 kb on - strand, within CA264_15485at 3628.299 kb on + strand, within CA264_15485at 3628.425 kb on + strandat 3628.425 kb on + strandat 3628.426 kb on - strandat 3628.436 kb on + strandat 3628.442 kb on + strandat 3628.443 kb on - strandat 3628.443 kb on - strandat 3628.444 kb on + strandat 3628.470 kb on + strandat 3628.476 kb on + strandat 3628.477 kb on - strandat 3628.477 kb on - strandat 3628.477 kb on - strandat 3628.521 kb on - strandat 3628.791 kb on + strand, within CA264_15490at 3628.792 kb on - strand, within CA264_15490at 3628.792 kb on - strand, within CA264_15490at 3628.792 kb on - strand, within CA264_15490at 3628.887 kb on - strand, within CA264_15490

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,626,594 + CA264_15475 0.39 +1.1
3,626,642 + CA264_15475 0.42 +1.1
3,626,642 + CA264_15475 0.42 +0.6
3,626,643 - CA264_15475 0.42 -1.3
3,626,643 - CA264_15475 0.42 -1.6
3,626,643 - CA264_15475 0.42 -0.6
3,626,671 + CA264_15475 0.44 +0.2
3,626,671 + CA264_15475 0.44 -0.7
3,626,672 - CA264_15475 0.44 +0.1
3,626,730 - CA264_15475 0.48 -1.7
3,626,961 + CA264_15475 0.63 -1.3
3,627,074 - CA264_15475 0.71 -1.4
3,627,076 + CA264_15475 0.71 +0.2
3,627,077 - CA264_15475 0.71 -3.7
3,627,192 - CA264_15475 0.78 -1.8
3,627,192 - CA264_15475 0.78 -1.8
3,627,348 - CA264_15475 0.89 -1.1
3,627,348 - CA264_15475 0.89 -1.4
3,627,362 + CA264_15475 0.90 -0.5
3,627,375 + -1.2
3,627,434 + -2.2
3,627,434 + -0.0
3,627,620 + CA264_15480 0.17 -1.3
3,627,620 + CA264_15480 0.17 -0.0
3,627,620 + CA264_15480 0.17 +1.0
3,627,620 + CA264_15480 0.17 -0.6
3,627,621 - CA264_15480 0.18 +0.4
3,627,666 - CA264_15480 0.30 -0.7
3,627,666 - CA264_15480 0.30 +0.1
3,627,666 - CA264_15480 0.30 -1.2
3,627,673 + CA264_15480 0.32 -1.6
3,627,674 - CA264_15480 0.32 -1.5
3,627,674 - CA264_15480 0.32 +0.5
3,627,886 + -0.8
3,627,917 + -0.1
3,627,918 - -1.6
3,628,021 - -0.7
3,628,054 + CA264_15485 0.14 +0.6
3,628,129 + CA264_15485 0.31 +1.0
3,628,130 - CA264_15485 0.31 -2.3
3,628,131 + CA264_15485 0.32 +0.9
3,628,250 + CA264_15485 0.58 +1.9
3,628,250 + CA264_15485 0.58 +0.4
3,628,251 - CA264_15485 0.58 +0.7
3,628,299 + CA264_15485 0.69 -0.3
3,628,425 + +2.1
3,628,425 + +1.5
3,628,426 - -0.0
3,628,436 + +1.6
3,628,442 + +0.1
3,628,443 - -0.2
3,628,443 - +1.6
3,628,444 + +0.1
3,628,470 + -1.0
3,628,476 + -1.0
3,628,477 - -0.5
3,628,477 - -1.3
3,628,477 - -1.2
3,628,521 - -3.6
3,628,791 + CA264_15490 0.26 +1.3
3,628,792 - CA264_15490 0.26 -0.2
3,628,792 - CA264_15490 0.26 -1.6
3,628,792 - CA264_15490 0.26 -1.8
3,628,887 - CA264_15490 0.35 -2.7

Or see this region's nucleotide sequence