Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13720

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13715 and CA264_13720 are separated by 134 nucleotidesCA264_13720 and CA264_13725 are separated by 2 nucleotidesCA264_13725 and CA264_13730 are separated by 154 nucleotides CA264_13715: CA264_13715 - sorbosone dehydrogenase, at 3,205,817 to 3,207,022 _13715 CA264_13720: CA264_13720 - hypothetical protein, at 3,207,157 to 3,207,711 _13720 CA264_13725: CA264_13725 - alpha/beta hydrolase, at 3,207,714 to 3,208,517 _13725 CA264_13730: CA264_13730 - hypothetical protein, at 3,208,672 to 3,209,214 _13730 Position (kb) 3207 3208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3206.282 kb on - strand, within CA264_13715at 3206.304 kb on + strand, within CA264_13715at 3206.463 kb on + strand, within CA264_13715at 3206.464 kb on - strand, within CA264_13715at 3206.493 kb on + strand, within CA264_13715at 3206.545 kb on - strand, within CA264_13715at 3206.574 kb on - strand, within CA264_13715at 3206.613 kb on + strand, within CA264_13715at 3206.614 kb on - strand, within CA264_13715at 3206.805 kb on + strand, within CA264_13715at 3206.805 kb on + strand, within CA264_13715at 3206.806 kb on - strand, within CA264_13715at 3207.042 kb on + strandat 3207.042 kb on + strandat 3207.042 kb on + strandat 3207.050 kb on + strandat 3207.061 kb on - strandat 3207.099 kb on + strandat 3207.104 kb on + strandat 3207.105 kb on - strandat 3207.105 kb on - strandat 3207.108 kb on + strandat 3207.109 kb on - strandat 3207.109 kb on - strandat 3207.110 kb on + strandat 3207.124 kb on + strandat 3207.156 kb on + strandat 3207.195 kb on - strandat 3207.195 kb on - strandat 3207.387 kb on + strand, within CA264_13720at 3207.388 kb on - strand, within CA264_13720at 3207.388 kb on - strand, within CA264_13720at 3207.388 kb on - strand, within CA264_13720at 3207.437 kb on - strand, within CA264_13720at 3207.500 kb on + strand, within CA264_13720at 3207.513 kb on - strand, within CA264_13720at 3207.632 kb on + strand, within CA264_13720at 3207.668 kb on - strandat 3207.716 kb on - strandat 3207.894 kb on - strand, within CA264_13725at 3208.023 kb on + strand, within CA264_13725at 3208.029 kb on - strand, within CA264_13725at 3208.030 kb on + strand, within CA264_13725at 3208.031 kb on - strand, within CA264_13725at 3208.129 kb on + strand, within CA264_13725at 3208.179 kb on + strand, within CA264_13725at 3208.369 kb on + strand, within CA264_13725at 3208.369 kb on + strand, within CA264_13725at 3208.369 kb on + strand, within CA264_13725at 3208.370 kb on - strand, within CA264_13725at 3208.378 kb on + strand, within CA264_13725at 3208.411 kb on + strand, within CA264_13725at 3208.412 kb on - strand, within CA264_13725at 3208.412 kb on - strand, within CA264_13725at 3208.480 kb on + strandat 3208.530 kb on + strandat 3208.530 kb on + strandat 3208.532 kb on + strandat 3208.532 kb on + strandat 3208.533 kb on - strandat 3208.533 kb on - strandat 3208.563 kb on + strandat 3208.564 kb on - strandat 3208.564 kb on - strandat 3208.567 kb on + strandat 3208.568 kb on - strandat 3208.573 kb on + strandat 3208.577 kb on - strandat 3208.577 kb on - strandat 3208.577 kb on - strandat 3208.577 kb on - strandat 3208.596 kb on + strandat 3208.597 kb on - strandat 3208.597 kb on - strandat 3208.597 kb on - strandat 3208.597 kb on - strandat 3208.623 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,206,282 - CA264_13715 0.39 -0.7
3,206,304 + CA264_13715 0.40 +0.6
3,206,463 + CA264_13715 0.54 -1.0
3,206,464 - CA264_13715 0.54 -2.3
3,206,493 + CA264_13715 0.56 -2.5
3,206,545 - CA264_13715 0.60 +3.3
3,206,574 - CA264_13715 0.63 -1.5
3,206,613 + CA264_13715 0.66 +0.9
3,206,614 - CA264_13715 0.66 +1.0
3,206,805 + CA264_13715 0.82 +0.6
3,206,805 + CA264_13715 0.82 -0.2
3,206,806 - CA264_13715 0.82 -0.8
3,207,042 + +0.0
3,207,042 + -1.7
3,207,042 + -1.1
3,207,050 + -0.6
3,207,061 - -0.8
3,207,099 + +0.1
3,207,104 + -0.0
3,207,105 - +0.1
3,207,105 - -0.6
3,207,108 + +0.8
3,207,109 - +0.0
3,207,109 - -0.8
3,207,110 + +0.2
3,207,124 + -2.6
3,207,156 + -0.6
3,207,195 - -2.0
3,207,195 - +0.1
3,207,387 + CA264_13720 0.41 -1.0
3,207,388 - CA264_13720 0.42 -0.6
3,207,388 - CA264_13720 0.42 -0.2
3,207,388 - CA264_13720 0.42 -0.2
3,207,437 - CA264_13720 0.50 -1.3
3,207,500 + CA264_13720 0.62 +1.1
3,207,513 - CA264_13720 0.64 +0.6
3,207,632 + CA264_13720 0.86 +2.3
3,207,668 - -1.7
3,207,716 - +0.8
3,207,894 - CA264_13725 0.22 +0.0
3,208,023 + CA264_13725 0.38 -0.1
3,208,029 - CA264_13725 0.39 -0.2
3,208,030 + CA264_13725 0.39 -0.2
3,208,031 - CA264_13725 0.39 +1.3
3,208,129 + CA264_13725 0.52 +0.4
3,208,179 + CA264_13725 0.58 -0.7
3,208,369 + CA264_13725 0.81 -1.0
3,208,369 + CA264_13725 0.81 -0.5
3,208,369 + CA264_13725 0.81 +1.0
3,208,370 - CA264_13725 0.82 -1.2
3,208,378 + CA264_13725 0.83 +0.5
3,208,411 + CA264_13725 0.87 +2.5
3,208,412 - CA264_13725 0.87 -1.5
3,208,412 - CA264_13725 0.87 +0.1
3,208,480 + +0.2
3,208,530 + -0.1
3,208,530 + +0.1
3,208,532 + -0.4
3,208,532 + -0.6
3,208,533 - +0.6
3,208,533 - +1.7
3,208,563 + -1.1
3,208,564 - +0.4
3,208,564 - -0.6
3,208,567 + +0.0
3,208,568 - +0.5
3,208,573 + +0.7
3,208,577 - +1.1
3,208,577 - -0.8
3,208,577 - +0.3
3,208,577 - -0.5
3,208,596 + +0.2
3,208,597 - +1.5
3,208,597 - -0.6
3,208,597 - +0.2
3,208,597 - -0.6
3,208,623 + -1.1

Or see this region's nucleotide sequence