Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13550

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13545 and CA264_13550 are separated by 59 nucleotidesCA264_13550 and CA264_13555 are separated by 197 nucleotidesCA264_13555 and CA264_13560 are separated by 177 nucleotides CA264_13545: CA264_13545 - ATP-binding protein, at 3,162,392 to 3,163,087 _13545 CA264_13550: CA264_13550 - hypothetical protein, at 3,163,147 to 3,164,622 _13550 CA264_13555: CA264_13555 - hypothetical protein, at 3,164,820 to 3,165,110 _13555 CA264_13560: CA264_13560 - membrane protein insertion efficiency factor YidD, at 3,165,288 to 3,165,509 _13560 Position (kb) 3163 3164 3165Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3162.233 kb on - strandat 3162.233 kb on - strandat 3162.265 kb on - strandat 3162.265 kb on - strandat 3162.301 kb on - strandat 3162.319 kb on + strandat 3162.319 kb on + strandat 3162.319 kb on + strandat 3162.320 kb on - strandat 3162.320 kb on - strandat 3162.327 kb on - strandat 3162.405 kb on + strandat 3162.405 kb on + strandat 3162.405 kb on + strandat 3162.405 kb on + strandat 3162.421 kb on + strandat 3162.491 kb on + strand, within CA264_13545at 3162.497 kb on + strand, within CA264_13545at 3162.498 kb on - strand, within CA264_13545at 3162.498 kb on - strand, within CA264_13545at 3162.498 kb on - strand, within CA264_13545at 3162.661 kb on + strand, within CA264_13545at 3162.665 kb on + strand, within CA264_13545at 3162.867 kb on + strand, within CA264_13545at 3162.900 kb on - strand, within CA264_13545at 3162.900 kb on - strand, within CA264_13545at 3162.912 kb on + strand, within CA264_13545at 3162.913 kb on - strand, within CA264_13545at 3163.031 kb on + strandat 3163.032 kb on - strandat 3163.032 kb on - strandat 3163.037 kb on + strandat 3163.059 kb on - strandat 3163.077 kb on - strandat 3163.083 kb on - strandat 3163.102 kb on - strandat 3163.106 kb on + strandat 3163.107 kb on - strandat 3163.129 kb on + strandat 3163.148 kb on + strandat 3163.182 kb on + strandat 3163.182 kb on + strandat 3163.183 kb on - strandat 3163.253 kb on - strandat 3163.363 kb on + strand, within CA264_13550at 3163.418 kb on + strand, within CA264_13550at 3163.489 kb on + strand, within CA264_13550at 3163.491 kb on + strand, within CA264_13550at 3163.492 kb on - strand, within CA264_13550at 3163.498 kb on - strand, within CA264_13550at 3163.498 kb on - strand, within CA264_13550at 3163.537 kb on + strand, within CA264_13550at 3163.537 kb on + strand, within CA264_13550at 3163.538 kb on - strand, within CA264_13550at 3163.538 kb on - strand, within CA264_13550at 3163.542 kb on + strand, within CA264_13550at 3163.681 kb on + strand, within CA264_13550at 3163.721 kb on + strand, within CA264_13550at 3163.722 kb on - strand, within CA264_13550at 3163.751 kb on + strand, within CA264_13550at 3163.752 kb on - strand, within CA264_13550at 3163.789 kb on - strand, within CA264_13550at 3163.810 kb on - strand, within CA264_13550at 3163.810 kb on - strand, within CA264_13550at 3163.828 kb on + strand, within CA264_13550at 3163.829 kb on - strand, within CA264_13550at 3163.840 kb on + strand, within CA264_13550at 3163.923 kb on + strand, within CA264_13550at 3163.924 kb on - strand, within CA264_13550at 3164.056 kb on + strand, within CA264_13550at 3164.056 kb on + strand, within CA264_13550at 3164.060 kb on + strand, within CA264_13550at 3164.061 kb on - strand, within CA264_13550at 3164.061 kb on - strand, within CA264_13550at 3164.061 kb on - strand, within CA264_13550at 3164.119 kb on + strand, within CA264_13550at 3164.125 kb on + strand, within CA264_13550at 3164.126 kb on - strand, within CA264_13550at 3164.141 kb on + strand, within CA264_13550at 3164.142 kb on - strand, within CA264_13550at 3164.216 kb on + strand, within CA264_13550at 3164.345 kb on + strand, within CA264_13550at 3164.345 kb on + strand, within CA264_13550at 3164.519 kb on + strandat 3164.520 kb on - strandat 3164.544 kb on + strandat 3164.545 kb on - strandat 3164.545 kb on - strandat 3164.586 kb on - strandat 3164.586 kb on - strandat 3164.622 kb on + strandat 3164.623 kb on - strandat 3164.623 kb on - strandat 3164.625 kb on - strandat 3164.638 kb on - strandat 3164.638 kb on - strandat 3164.640 kb on + strandat 3164.643 kb on - strandat 3164.643 kb on - strandat 3164.644 kb on + strandat 3164.656 kb on + strandat 3164.656 kb on + strandat 3164.664 kb on + strandat 3164.724 kb on - strandat 3164.727 kb on + strandat 3164.822 kb on - strandat 3164.823 kb on + strandat 3164.944 kb on + strand, within CA264_13555at 3164.948 kb on + strand, within CA264_13555at 3164.948 kb on + strand, within CA264_13555at 3164.956 kb on + strand, within CA264_13555at 3165.024 kb on + strand, within CA264_13555at 3165.024 kb on + strand, within CA264_13555at 3165.105 kb on + strandat 3165.124 kb on + strandat 3165.155 kb on - strandat 3165.164 kb on - strandat 3165.168 kb on - strandat 3165.191 kb on + strandat 3165.191 kb on + strandat 3165.192 kb on - strandat 3165.197 kb on - strandat 3165.204 kb on - strandat 3165.217 kb on - strandat 3165.289 kb on + strandat 3165.289 kb on + strandat 3165.290 kb on - strandat 3165.377 kb on - strand, within CA264_13560at 3165.400 kb on + strand, within CA264_13560at 3165.548 kb on - strandat 3165.570 kb on + strandat 3165.575 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,162,233 - +0.1
3,162,233 - +0.1
3,162,265 - -1.8
3,162,265 - -1.3
3,162,301 - -0.6
3,162,319 + -1.0
3,162,319 + +1.7
3,162,319 + +1.6
3,162,320 - +0.4
3,162,320 - +0.6
3,162,327 - +0.3
3,162,405 + -0.1
3,162,405 + -1.6
3,162,405 + +0.9
3,162,405 + +1.5
3,162,421 + +0.2
3,162,491 + CA264_13545 0.14 +0.7
3,162,497 + CA264_13545 0.15 -0.2
3,162,498 - CA264_13545 0.15 +0.1
3,162,498 - CA264_13545 0.15 +0.2
3,162,498 - CA264_13545 0.15 -1.1
3,162,661 + CA264_13545 0.39 +0.9
3,162,665 + CA264_13545 0.39 +0.3
3,162,867 + CA264_13545 0.68 -1.1
3,162,900 - CA264_13545 0.73 +0.3
3,162,900 - CA264_13545 0.73 +1.4
3,162,912 + CA264_13545 0.75 +2.7
3,162,913 - CA264_13545 0.75 +1.3
3,163,031 + +1.0
3,163,032 - +0.3
3,163,032 - +0.9
3,163,037 + +2.1
3,163,059 - +1.3
3,163,077 - +0.4
3,163,083 - +1.5
3,163,102 - +0.7
3,163,106 + +1.5
3,163,107 - +0.4
3,163,129 + +0.5
3,163,148 + +0.3
3,163,182 + +1.0
3,163,182 + +1.0
3,163,183 - +0.6
3,163,253 - -0.4
3,163,363 + CA264_13550 0.15 +0.6
3,163,418 + CA264_13550 0.18 +1.2
3,163,489 + CA264_13550 0.23 +0.6
3,163,491 + CA264_13550 0.23 -1.4
3,163,492 - CA264_13550 0.23 +0.6
3,163,498 - CA264_13550 0.24 +2.0
3,163,498 - CA264_13550 0.24 +0.7
3,163,537 + CA264_13550 0.26 +1.7
3,163,537 + CA264_13550 0.26 +0.9
3,163,538 - CA264_13550 0.26 -0.1
3,163,538 - CA264_13550 0.26 +1.2
3,163,542 + CA264_13550 0.27 +0.9
3,163,681 + CA264_13550 0.36 +0.5
3,163,721 + CA264_13550 0.39 -0.2
3,163,722 - CA264_13550 0.39 +0.9
3,163,751 + CA264_13550 0.41 +1.5
3,163,752 - CA264_13550 0.41 +0.1
3,163,789 - CA264_13550 0.43 +1.0
3,163,810 - CA264_13550 0.45 +1.0
3,163,810 - CA264_13550 0.45 +0.8
3,163,828 + CA264_13550 0.46 +1.5
3,163,829 - CA264_13550 0.46 +0.3
3,163,840 + CA264_13550 0.47 +1.2
3,163,923 + CA264_13550 0.53 +3.3
3,163,924 - CA264_13550 0.53 +0.1
3,164,056 + CA264_13550 0.62 -0.9
3,164,056 + CA264_13550 0.62 +1.0
3,164,060 + CA264_13550 0.62 +1.3
3,164,061 - CA264_13550 0.62 +1.4
3,164,061 - CA264_13550 0.62 +0.1
3,164,061 - CA264_13550 0.62 -0.1
3,164,119 + CA264_13550 0.66 -0.2
3,164,125 + CA264_13550 0.66 -0.3
3,164,126 - CA264_13550 0.66 +1.4
3,164,141 + CA264_13550 0.67 +1.0
3,164,142 - CA264_13550 0.67 -0.1
3,164,216 + CA264_13550 0.72 +1.6
3,164,345 + CA264_13550 0.81 +0.5
3,164,345 + CA264_13550 0.81 +0.4
3,164,519 + -0.3
3,164,520 - -1.3
3,164,544 + +0.9
3,164,545 - -0.5
3,164,545 - +1.4
3,164,586 - +0.0
3,164,586 - +0.5
3,164,622 + +0.1
3,164,623 - +0.7
3,164,623 - -1.4
3,164,625 - +0.5
3,164,638 - -0.3
3,164,638 - -0.2
3,164,640 + +1.0
3,164,643 - -0.1
3,164,643 - -1.8
3,164,644 + +1.4
3,164,656 + +0.1
3,164,656 + -0.9
3,164,664 + -0.8
3,164,724 - +1.9
3,164,727 + +1.6
3,164,822 - -0.5
3,164,823 + +0.2
3,164,944 + CA264_13555 0.43 +1.6
3,164,948 + CA264_13555 0.44 -0.9
3,164,948 + CA264_13555 0.44 +0.7
3,164,956 + CA264_13555 0.47 -0.2
3,165,024 + CA264_13555 0.70 +1.0
3,165,024 + CA264_13555 0.70 -0.7
3,165,105 + -0.2
3,165,124 + +2.1
3,165,155 - +0.3
3,165,164 - -0.5
3,165,168 - +0.4
3,165,191 + -0.5
3,165,191 + +1.7
3,165,192 - +2.3
3,165,197 - +0.5
3,165,204 - +0.0
3,165,217 - -0.2
3,165,289 + -0.5
3,165,289 + -0.1
3,165,290 - -0.0
3,165,377 - CA264_13560 0.40 +2.0
3,165,400 + CA264_13560 0.50 +0.7
3,165,548 - -0.6
3,165,570 + -0.8
3,165,575 - -0.0

Or see this region's nucleotide sequence