Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13515

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_13510 and CA264_13515 are separated by 16 nucleotidesCA264_13515 and CA264_13520 are separated by 59 nucleotidesCA264_13520 and CA264_13525 are separated by 211 nucleotides CA264_13510: CA264_13510 - hypothetical protein, at 3,154,700 to 3,156,700 _13510 CA264_13515: CA264_13515 - glyoxalase/bleomycin resistance/dioxygenase family protein, at 3,156,717 to 3,157,139 _13515 CA264_13520: CA264_13520 - thioredoxin family protein, at 3,157,199 to 3,157,843 _13520 CA264_13525: CA264_13525 - NAD-dependent dehydratase, at 3,158,055 to 3,159,008 _13525 Position (kb) 3156 3157 3158Strain fitness (log2 ratio) -2 -1 0 1 2at 3155.747 kb on + strand, within CA264_13510at 3155.795 kb on + strand, within CA264_13510at 3155.795 kb on + strand, within CA264_13510at 3155.836 kb on + strand, within CA264_13510at 3155.837 kb on - strand, within CA264_13510at 3155.837 kb on - strand, within CA264_13510at 3155.843 kb on + strand, within CA264_13510at 3155.843 kb on + strand, within CA264_13510at 3155.844 kb on - strand, within CA264_13510at 3155.852 kb on - strand, within CA264_13510at 3155.950 kb on + strand, within CA264_13510at 3155.978 kb on - strand, within CA264_13510at 3156.049 kb on - strand, within CA264_13510at 3156.075 kb on - strand, within CA264_13510at 3156.238 kb on - strand, within CA264_13510at 3156.369 kb on - strand, within CA264_13510at 3156.412 kb on + strand, within CA264_13510at 3156.699 kb on - strandat 3156.699 kb on - strandat 3156.708 kb on + strandat 3156.709 kb on - strandat 3156.788 kb on - strand, within CA264_13515at 3156.861 kb on + strand, within CA264_13515at 3156.972 kb on + strand, within CA264_13515at 3156.973 kb on - strand, within CA264_13515at 3156.992 kb on + strand, within CA264_13515at 3156.993 kb on - strand, within CA264_13515at 3156.993 kb on - strand, within CA264_13515at 3157.003 kb on + strand, within CA264_13515at 3157.078 kb on + strand, within CA264_13515at 3157.085 kb on - strand, within CA264_13515at 3157.085 kb on - strand, within CA264_13515at 3157.138 kb on - strandat 3157.175 kb on + strandat 3157.181 kb on + strandat 3157.181 kb on + strandat 3157.267 kb on + strand, within CA264_13520at 3157.267 kb on + strand, within CA264_13520at 3157.476 kb on + strand, within CA264_13520at 3157.477 kb on - strand, within CA264_13520at 3157.520 kb on + strand, within CA264_13520at 3157.613 kb on + strand, within CA264_13520at 3157.708 kb on + strand, within CA264_13520at 3157.709 kb on - strand, within CA264_13520at 3157.710 kb on + strand, within CA264_13520at 3157.710 kb on + strand, within CA264_13520at 3157.715 kb on + strand, within CA264_13520at 3157.715 kb on + strand, within CA264_13520at 3157.716 kb on - strand, within CA264_13520at 3157.716 kb on - strand, within CA264_13520at 3157.716 kb on - strand, within CA264_13520at 3157.716 kb on - strand, within CA264_13520at 3157.880 kb on + strandat 3157.885 kb on + strandat 3157.886 kb on - strandat 3157.896 kb on + strandat 3157.896 kb on + strandat 3157.896 kb on + strandat 3157.899 kb on + strandat 3158.015 kb on + strandat 3158.034 kb on + strandat 3158.034 kb on + strandat 3158.102 kb on + strandat 3158.103 kb on - strandat 3158.104 kb on + strandat 3158.104 kb on + strandat 3158.105 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
3,155,747 + CA264_13510 0.52 -1.6
3,155,795 + CA264_13510 0.55 -1.2
3,155,795 + CA264_13510 0.55 -1.4
3,155,836 + CA264_13510 0.57 -0.2
3,155,837 - CA264_13510 0.57 +0.1
3,155,837 - CA264_13510 0.57 -0.9
3,155,843 + CA264_13510 0.57 -1.9
3,155,843 + CA264_13510 0.57 -1.7
3,155,844 - CA264_13510 0.57 -0.4
3,155,852 - CA264_13510 0.58 -0.6
3,155,950 + CA264_13510 0.62 -0.1
3,155,978 - CA264_13510 0.64 -0.5
3,156,049 - CA264_13510 0.67 -1.3
3,156,075 - CA264_13510 0.69 -0.5
3,156,238 - CA264_13510 0.77 +0.5
3,156,369 - CA264_13510 0.83 +1.3
3,156,412 + CA264_13510 0.86 +0.9
3,156,699 - -0.6
3,156,699 - +0.5
3,156,708 + -1.1
3,156,709 - -1.8
3,156,788 - CA264_13515 0.17 +1.1
3,156,861 + CA264_13515 0.34 -0.4
3,156,972 + CA264_13515 0.60 -0.2
3,156,973 - CA264_13515 0.61 -0.0
3,156,992 + CA264_13515 0.65 -1.3
3,156,993 - CA264_13515 0.65 -0.8
3,156,993 - CA264_13515 0.65 +1.9
3,157,003 + CA264_13515 0.68 -1.2
3,157,078 + CA264_13515 0.85 -1.2
3,157,085 - CA264_13515 0.87 -1.5
3,157,085 - CA264_13515 0.87 -0.5
3,157,138 - -0.7
3,157,175 + +0.5
3,157,181 + -2.3
3,157,181 + -0.5
3,157,267 + CA264_13520 0.11 -0.2
3,157,267 + CA264_13520 0.11 +1.0
3,157,476 + CA264_13520 0.43 +0.0
3,157,477 - CA264_13520 0.43 -0.7
3,157,520 + CA264_13520 0.50 +0.3
3,157,613 + CA264_13520 0.64 -0.0
3,157,708 + CA264_13520 0.79 +0.8
3,157,709 - CA264_13520 0.79 -2.3
3,157,710 + CA264_13520 0.79 -1.2
3,157,710 + CA264_13520 0.79 +0.5
3,157,715 + CA264_13520 0.80 +1.5
3,157,715 + CA264_13520 0.80 +0.3
3,157,716 - CA264_13520 0.80 -1.0
3,157,716 - CA264_13520 0.80 -0.5
3,157,716 - CA264_13520 0.80 +0.1
3,157,716 - CA264_13520 0.80 -2.3
3,157,880 + -0.2
3,157,885 + -0.1
3,157,886 - -1.0
3,157,896 + -1.1
3,157,896 + +1.3
3,157,896 + +1.7
3,157,899 + -1.2
3,158,015 + -1.6
3,158,034 + +0.4
3,158,034 + -1.1
3,158,102 + -0.9
3,158,103 - -1.2
3,158,104 + -1.4
3,158,104 + -0.8
3,158,105 - -0.5

Or see this region's nucleotide sequence