Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12985

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12980 and CA264_12985 are separated by 237 nucleotidesCA264_12985 and CA264_12990 are separated by 60 nucleotidesCA264_12990 and CA264_12995 are separated by 182 nucleotides CA264_12980: CA264_12980 - peptidase M28, at 3,027,086 to 3,028,642 _12980 CA264_12985: CA264_12985 - hypothetical protein, at 3,028,880 to 3,029,173 _12985 CA264_12990: CA264_12990 - ferritin, at 3,029,234 to 3,029,770 _12990 CA264_12995: CA264_12995 - hypothetical protein, at 3,029,953 to 3,030,306 _12995 Position (kb) 3028 3029 3030Strain fitness (log2 ratio) -2 -1 0 1 2at 3027.909 kb on + strand, within CA264_12980at 3028.113 kb on + strand, within CA264_12980at 3028.200 kb on - strand, within CA264_12980at 3028.272 kb on - strand, within CA264_12980at 3028.274 kb on - strand, within CA264_12980at 3028.462 kb on - strand, within CA264_12980at 3028.474 kb on - strand, within CA264_12980at 3028.474 kb on - strand, within CA264_12980at 3028.474 kb on - strand, within CA264_12980at 3028.478 kb on + strand, within CA264_12980at 3028.478 kb on + strand, within CA264_12980at 3028.573 kb on - strandat 3028.573 kb on - strandat 3028.585 kb on + strandat 3028.586 kb on - strandat 3028.586 kb on - strandat 3028.666 kb on - strandat 3028.764 kb on + strandat 3028.765 kb on - strandat 3028.769 kb on + strandat 3028.771 kb on + strandat 3028.771 kb on + strandat 3028.832 kb on + strandat 3028.842 kb on + strandat 3028.843 kb on - strandat 3028.877 kb on + strandat 3028.877 kb on + strandat 3028.895 kb on - strandat 3028.895 kb on - strandat 3028.911 kb on + strand, within CA264_12985at 3028.911 kb on + strand, within CA264_12985at 3028.912 kb on - strand, within CA264_12985at 3028.916 kb on + strand, within CA264_12985at 3028.916 kb on + strand, within CA264_12985at 3028.917 kb on - strand, within CA264_12985at 3028.917 kb on - strand, within CA264_12985at 3028.920 kb on + strand, within CA264_12985at 3028.920 kb on + strand, within CA264_12985at 3028.920 kb on + strand, within CA264_12985at 3028.920 kb on + strand, within CA264_12985at 3028.921 kb on - strand, within CA264_12985at 3028.921 kb on - strand, within CA264_12985at 3029.063 kb on - strand, within CA264_12985at 3029.068 kb on + strand, within CA264_12985at 3029.069 kb on - strand, within CA264_12985at 3029.069 kb on - strand, within CA264_12985at 3029.218 kb on + strandat 3029.229 kb on + strandat 3029.289 kb on + strand, within CA264_12990at 3029.349 kb on + strand, within CA264_12990at 3029.350 kb on - strand, within CA264_12990at 3029.350 kb on - strand, within CA264_12990at 3029.350 kb on - strand, within CA264_12990at 3029.384 kb on + strand, within CA264_12990at 3029.404 kb on - strand, within CA264_12990at 3029.460 kb on - strand, within CA264_12990at 3029.525 kb on + strand, within CA264_12990at 3029.526 kb on - strand, within CA264_12990at 3029.615 kb on - strand, within CA264_12990at 3029.673 kb on + strand, within CA264_12990at 3029.673 kb on + strand, within CA264_12990at 3029.673 kb on + strand, within CA264_12990at 3029.674 kb on - strand, within CA264_12990at 3029.726 kb on + strandat 3029.726 kb on + strandat 3029.727 kb on - strandat 3029.728 kb on + strandat 3029.750 kb on - strandat 3029.771 kb on - strandat 3029.785 kb on - strandat 3029.788 kb on + strandat 3029.791 kb on + strandat 3029.792 kb on - strandat 3029.792 kb on - strandat 3029.831 kb on - strandat 3029.831 kb on - strandat 3029.839 kb on - strandat 3029.841 kb on - strandat 3029.841 kb on - strandat 3029.939 kb on - strandat 3030.006 kb on + strand, within CA264_12995at 3030.007 kb on - strand, within CA264_12995at 3030.065 kb on + strand, within CA264_12995at 3030.065 kb on + strand, within CA264_12995at 3030.065 kb on + strand, within CA264_12995at 3030.066 kb on - strand, within CA264_12995at 3030.066 kb on - strand, within CA264_12995at 3030.145 kb on - strand, within CA264_12995

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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3,027,909 + CA264_12980 0.53 -0.0
3,028,113 + CA264_12980 0.66 -1.3
3,028,200 - CA264_12980 0.72 -0.5
3,028,272 - CA264_12980 0.76 -0.7
3,028,274 - CA264_12980 0.76 -0.7
3,028,462 - CA264_12980 0.88 +0.4
3,028,474 - CA264_12980 0.89 +0.5
3,028,474 - CA264_12980 0.89 -0.1
3,028,474 - CA264_12980 0.89 -0.5
3,028,478 + CA264_12980 0.89 -1.2
3,028,478 + CA264_12980 0.89 -0.3
3,028,573 - +0.1
3,028,573 - +0.6
3,028,585 + -1.3
3,028,586 - -0.5
3,028,586 - -0.3
3,028,666 - -0.4
3,028,764 + +0.1
3,028,765 - -0.6
3,028,769 + -0.8
3,028,771 + +0.2
3,028,771 + -0.2
3,028,832 + -0.9
3,028,842 + -0.9
3,028,843 - -0.0
3,028,877 + -0.3
3,028,877 + +0.1
3,028,895 - +2.1
3,028,895 - -0.9
3,028,911 + CA264_12985 0.11 -1.1
3,028,911 + CA264_12985 0.11 -0.5
3,028,912 - CA264_12985 0.11 -0.9
3,028,916 + CA264_12985 0.12 -1.6
3,028,916 + CA264_12985 0.12 -2.5
3,028,917 - CA264_12985 0.13 -1.2
3,028,917 - CA264_12985 0.13 -1.4
3,028,920 + CA264_12985 0.14 -0.5
3,028,920 + CA264_12985 0.14 -1.0
3,028,920 + CA264_12985 0.14 -1.3
3,028,920 + CA264_12985 0.14 -2.3
3,028,921 - CA264_12985 0.14 +0.7
3,028,921 - CA264_12985 0.14 -0.3
3,029,063 - CA264_12985 0.62 -1.4
3,029,068 + CA264_12985 0.64 -0.9
3,029,069 - CA264_12985 0.64 +1.2
3,029,069 - CA264_12985 0.64 -0.2
3,029,218 + +1.0
3,029,229 + -1.1
3,029,289 + CA264_12990 0.10 +0.8
3,029,349 + CA264_12990 0.21 +0.9
3,029,350 - CA264_12990 0.22 -1.3
3,029,350 - CA264_12990 0.22 -1.1
3,029,350 - CA264_12990 0.22 -0.4
3,029,384 + CA264_12990 0.28 +0.4
3,029,404 - CA264_12990 0.32 -1.4
3,029,460 - CA264_12990 0.42 -1.4
3,029,525 + CA264_12990 0.54 +1.0
3,029,526 - CA264_12990 0.54 -0.3
3,029,615 - CA264_12990 0.71 -0.9
3,029,673 + CA264_12990 0.82 -0.9
3,029,673 + CA264_12990 0.82 -0.2
3,029,673 + CA264_12990 0.82 -0.3
3,029,674 - CA264_12990 0.82 -2.4
3,029,726 + -0.2
3,029,726 + -1.0
3,029,727 - -1.0
3,029,728 + +1.7
3,029,750 - -0.3
3,029,771 - -0.8
3,029,785 - -1.4
3,029,788 + -0.1
3,029,791 + -0.5
3,029,792 - -0.2
3,029,792 - +1.7
3,029,831 - -1.0
3,029,831 - -0.5
3,029,839 - -1.1
3,029,841 - +0.7
3,029,841 - -1.5
3,029,939 - -0.6
3,030,006 + CA264_12995 0.15 -0.9
3,030,007 - CA264_12995 0.15 +0.3
3,030,065 + CA264_12995 0.32 -0.4
3,030,065 + CA264_12995 0.32 +1.1
3,030,065 + CA264_12995 0.32 -1.7
3,030,066 - CA264_12995 0.32 +0.5
3,030,066 - CA264_12995 0.32 -0.3
3,030,145 - CA264_12995 0.54 -0.2

Or see this region's nucleotide sequence