Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10610

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10600 and CA264_10605 are separated by 232 nucleotidesCA264_10605 and CA264_10610 are separated by 335 nucleotidesCA264_10610 and CA264_10615 are separated by 292 nucleotides CA264_10600: CA264_10600 - hypothetical protein, at 2,454,187 to 2,454,381 _10600 CA264_10605: CA264_10605 - tRNA-Pro, at 2,454,614 to 2,454,687 _10605 CA264_10610: CA264_10610 - tRNA-Pro, at 2,455,023 to 2,455,099 _10610 CA264_10615: CA264_10615 - CPBP family intramembrane metalloprotease, at 2,455,392 to 2,456,164 _10615 Position (kb) 2455 2456Strain fitness (log2 ratio) -2 -1 0 1 2at 2454.091 kb on + strandat 2454.092 kb on - strandat 2454.092 kb on - strandat 2454.182 kb on + strandat 2454.266 kb on - strand, within CA264_10600at 2454.333 kb on + strand, within CA264_10600at 2454.380 kb on - strandat 2454.392 kb on - strandat 2454.398 kb on + strandat 2454.399 kb on - strandat 2454.408 kb on - strandat 2454.412 kb on - strandat 2454.420 kb on + strandat 2454.428 kb on + strandat 2454.473 kb on + strandat 2454.473 kb on + strandat 2454.485 kb on + strandat 2454.485 kb on + strandat 2454.485 kb on + strandat 2454.487 kb on + strandat 2454.573 kb on + strandat 2454.605 kb on - strandat 2454.622 kb on - strand, within CA264_10605at 2454.741 kb on + strandat 2454.742 kb on - strandat 2454.742 kb on - strandat 2454.742 kb on - strandat 2454.751 kb on - strandat 2454.763 kb on - strandat 2454.903 kb on + strandat 2454.903 kb on + strandat 2454.927 kb on - strandat 2455.035 kb on + strand, within CA264_10610at 2455.036 kb on - strand, within CA264_10610at 2455.124 kb on - strandat 2455.198 kb on + strandat 2455.198 kb on + strandat 2455.199 kb on - strandat 2455.199 kb on - strandat 2455.208 kb on - strandat 2455.214 kb on - strandat 2455.299 kb on - strandat 2455.300 kb on + strandat 2455.317 kb on + strandat 2455.330 kb on + strandat 2455.350 kb on + strandat 2455.350 kb on + strandat 2455.378 kb on + strandat 2455.383 kb on - strandat 2455.388 kb on + strandat 2455.436 kb on - strandat 2455.436 kb on - strandat 2455.488 kb on - strand, within CA264_10615at 2455.498 kb on + strand, within CA264_10615at 2455.532 kb on + strand, within CA264_10615at 2455.535 kb on - strand, within CA264_10615at 2455.574 kb on - strand, within CA264_10615at 2455.576 kb on - strand, within CA264_10615at 2455.589 kb on - strand, within CA264_10615at 2455.589 kb on - strand, within CA264_10615at 2455.683 kb on + strand, within CA264_10615at 2455.746 kb on + strand, within CA264_10615at 2455.746 kb on + strand, within CA264_10615at 2455.747 kb on - strand, within CA264_10615at 2455.747 kb on - strand, within CA264_10615at 2455.861 kb on + strand, within CA264_10615at 2455.862 kb on - strand, within CA264_10615at 2455.862 kb on - strand, within CA264_10615at 2455.869 kb on - strand, within CA264_10615at 2455.881 kb on + strand, within CA264_10615at 2455.926 kb on + strand, within CA264_10615at 2455.989 kb on + strand, within CA264_10615at 2456.023 kb on + strand, within CA264_10615at 2456.082 kb on + strand, within CA264_10615at 2456.083 kb on - strand, within CA264_10615

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,454,091 + -0.7
2,454,092 - +0.3
2,454,092 - -0.5
2,454,182 + +0.6
2,454,266 - CA264_10600 0.41 -0.5
2,454,333 + CA264_10600 0.75 -0.9
2,454,380 - +0.7
2,454,392 - -1.6
2,454,398 + -0.7
2,454,399 - -0.5
2,454,408 - -2.7
2,454,412 - -0.8
2,454,420 + -0.7
2,454,428 + -1.0
2,454,473 + -0.9
2,454,473 + -1.1
2,454,485 + -0.7
2,454,485 + -1.9
2,454,485 + +0.1
2,454,487 + -1.4
2,454,573 + -1.1
2,454,605 - +0.6
2,454,622 - CA264_10605 0.11 +0.4
2,454,741 + -1.3
2,454,742 - +0.2
2,454,742 - +1.3
2,454,742 - -1.6
2,454,751 - -1.6
2,454,763 - -1.8
2,454,903 + -0.6
2,454,903 + -1.8
2,454,927 - -1.0
2,455,035 + CA264_10610 0.16 -1.0
2,455,036 - CA264_10610 0.17 -1.3
2,455,124 - -1.4
2,455,198 + +2.4
2,455,198 + -0.6
2,455,199 - -0.1
2,455,199 - -1.8
2,455,208 - -0.4
2,455,214 - -1.7
2,455,299 - -1.2
2,455,300 + -0.5
2,455,317 + +0.3
2,455,330 + -0.1
2,455,350 + +0.1
2,455,350 + -0.4
2,455,378 + +2.5
2,455,383 - -0.1
2,455,388 + +0.2
2,455,436 - -0.8
2,455,436 - -1.7
2,455,488 - CA264_10615 0.12 -1.9
2,455,498 + CA264_10615 0.14 +0.2
2,455,532 + CA264_10615 0.18 +0.6
2,455,535 - CA264_10615 0.18 -0.3
2,455,574 - CA264_10615 0.24 -1.2
2,455,576 - CA264_10615 0.24 -0.9
2,455,589 - CA264_10615 0.25 -1.1
2,455,589 - CA264_10615 0.25 -1.0
2,455,683 + CA264_10615 0.38 +0.7
2,455,746 + CA264_10615 0.46 -0.6
2,455,746 + CA264_10615 0.46 -0.5
2,455,747 - CA264_10615 0.46 -1.9
2,455,747 - CA264_10615 0.46 -1.8
2,455,861 + CA264_10615 0.61 +0.6
2,455,862 - CA264_10615 0.61 -1.3
2,455,862 - CA264_10615 0.61 -1.2
2,455,869 - CA264_10615 0.62 +0.5
2,455,881 + CA264_10615 0.63 +0.2
2,455,926 + CA264_10615 0.69 +0.1
2,455,989 + CA264_10615 0.77 +1.1
2,456,023 + CA264_10615 0.82 +1.7
2,456,082 + CA264_10615 0.89 +0.5
2,456,083 - CA264_10615 0.89 -0.1

Or see this region's nucleotide sequence