Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10000

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_09995 and CA264_10000 are separated by 333 nucleotidesCA264_10000 and CA264_10005 are separated by 268 nucleotidesCA264_10005 and CA264_10010 are separated by 483 nucleotides CA264_09995: CA264_09995 - hypothetical protein, at 2,324,558 to 2,325,535 _09995 CA264_10000: CA264_10000 - DNA repair protein, at 2,325,869 to 2,326,336 _10000 CA264_10005: CA264_10005 - hypothetical protein, at 2,326,605 to 2,326,790 _10005 CA264_10010: CA264_10010 - hypothetical protein, at 2,327,274 to 2,327,855 _10010 Position (kb) 2325 2326 2327Strain fitness (log2 ratio) -3 -2 -1 0 1at 2324.883 kb on + strand, within CA264_09995at 2324.883 kb on + strand, within CA264_09995at 2324.884 kb on - strand, within CA264_09995at 2324.884 kb on - strand, within CA264_09995at 2324.884 kb on - strand, within CA264_09995at 2324.887 kb on + strand, within CA264_09995at 2324.891 kb on + strand, within CA264_09995at 2324.891 kb on + strand, within CA264_09995at 2324.891 kb on + strand, within CA264_09995at 2324.891 kb on + strand, within CA264_09995at 2324.892 kb on - strand, within CA264_09995at 2324.892 kb on - strand, within CA264_09995at 2324.892 kb on - strand, within CA264_09995at 2324.892 kb on - strand, within CA264_09995at 2324.892 kb on - strand, within CA264_09995at 2325.099 kb on + strand, within CA264_09995at 2325.404 kb on - strand, within CA264_09995at 2325.419 kb on + strand, within CA264_09995at 2325.420 kb on - strand, within CA264_09995at 2325.516 kb on - strandat 2325.581 kb on - strandat 2325.583 kb on + strandat 2325.584 kb on - strandat 2325.586 kb on + strandat 2325.707 kb on + strandat 2325.736 kb on + strandat 2325.736 kb on + strandat 2325.737 kb on - strandat 2325.737 kb on - strandat 2325.737 kb on - strandat 2325.805 kb on - strandat 2325.805 kb on - strandat 2325.835 kb on + strandat 2325.852 kb on + strandat 2325.852 kb on + strandat 2325.980 kb on + strand, within CA264_10000at 2326.079 kb on + strand, within CA264_10000at 2326.130 kb on - strand, within CA264_10000at 2326.147 kb on - strand, within CA264_10000at 2326.175 kb on - strand, within CA264_10000at 2326.307 kb on + strandat 2326.360 kb on - strandat 2326.360 kb on - strandat 2326.427 kb on - strandat 2326.431 kb on + strandat 2326.431 kb on + strandat 2326.432 kb on - strandat 2326.432 kb on - strandat 2326.432 kb on - strandat 2326.432 kb on - strandat 2326.440 kb on + strandat 2326.440 kb on + strandat 2326.441 kb on - strandat 2326.441 kb on - strandat 2326.441 kb on - strandat 2326.441 kb on - strandat 2326.474 kb on + strandat 2326.474 kb on + strandat 2326.475 kb on - strandat 2326.475 kb on - strandat 2326.475 kb on - strandat 2326.475 kb on - strandat 2326.497 kb on - strandat 2326.534 kb on - strandat 2326.534 kb on - strandat 2326.605 kb on - strandat 2326.605 kb on - strandat 2326.646 kb on + strand, within CA264_10005at 2326.725 kb on + strand, within CA264_10005at 2326.725 kb on + strand, within CA264_10005at 2326.834 kb on + strandat 2326.916 kb on - strandat 2326.916 kb on - strandat 2326.920 kb on - strandat 2326.955 kb on + strandat 2326.955 kb on + strandat 2326.965 kb on + strandat 2326.966 kb on - strandat 2326.966 kb on - strandat 2326.980 kb on + strandat 2327.055 kb on - strandat 2327.055 kb on - strandat 2327.055 kb on - strandat 2327.058 kb on + strandat 2327.067 kb on - strandat 2327.085 kb on + strandat 2327.086 kb on - strandat 2327.086 kb on - strandat 2327.139 kb on + strandat 2327.142 kb on + strandat 2327.142 kb on + strandat 2327.143 kb on - strandat 2327.143 kb on - strandat 2327.151 kb on - strandat 2327.164 kb on + strandat 2327.165 kb on - strandat 2327.184 kb on - strandat 2327.204 kb on - strandat 2327.220 kb on - strandat 2327.230 kb on - strandat 2327.230 kb on - strandat 2327.230 kb on - strandat 2327.234 kb on + strandat 2327.254 kb on + strandat 2327.255 kb on - strandat 2327.287 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
2,324,883 + CA264_09995 0.33 +0.3
2,324,883 + CA264_09995 0.33 +0.9
2,324,884 - CA264_09995 0.33 -0.5
2,324,884 - CA264_09995 0.33 +0.7
2,324,884 - CA264_09995 0.33 -1.6
2,324,887 + CA264_09995 0.34 -1.6
2,324,891 + CA264_09995 0.34 +0.2
2,324,891 + CA264_09995 0.34 -0.3
2,324,891 + CA264_09995 0.34 +0.2
2,324,891 + CA264_09995 0.34 -1.3
2,324,892 - CA264_09995 0.34 -0.8
2,324,892 - CA264_09995 0.34 -1.7
2,324,892 - CA264_09995 0.34 -1.2
2,324,892 - CA264_09995 0.34 -2.4
2,324,892 - CA264_09995 0.34 -1.0
2,325,099 + CA264_09995 0.55 -0.3
2,325,404 - CA264_09995 0.87 -0.2
2,325,419 + CA264_09995 0.88 +0.2
2,325,420 - CA264_09995 0.88 -0.3
2,325,516 - -0.1
2,325,581 - +0.8
2,325,583 + +0.2
2,325,584 - -0.1
2,325,586 + -1.1
2,325,707 + +1.2
2,325,736 + -0.5
2,325,736 + -0.8
2,325,737 - -1.1
2,325,737 - -0.1
2,325,737 - -2.4
2,325,805 - -1.4
2,325,805 - -1.3
2,325,835 + -1.8
2,325,852 + -0.5
2,325,852 + -0.7
2,325,980 + CA264_10000 0.24 -2.5
2,326,079 + CA264_10000 0.45 -0.6
2,326,130 - CA264_10000 0.56 -0.3
2,326,147 - CA264_10000 0.59 -0.9
2,326,175 - CA264_10000 0.65 -1.1
2,326,307 + -1.2
2,326,360 - -2.0
2,326,360 - -1.1
2,326,427 - -1.6
2,326,431 + +0.4
2,326,431 + -0.2
2,326,432 - -1.5
2,326,432 - -2.0
2,326,432 - -1.6
2,326,432 - -1.7
2,326,440 + +0.7
2,326,440 + -0.8
2,326,441 - -1.3
2,326,441 - -1.5
2,326,441 - -1.1
2,326,441 - -1.5
2,326,474 + +1.2
2,326,474 + +0.5
2,326,475 - -1.2
2,326,475 - -1.1
2,326,475 - -2.0
2,326,475 - -2.1
2,326,497 - -1.9
2,326,534 - -2.3
2,326,534 - +0.6
2,326,605 - -2.0
2,326,605 - -1.6
2,326,646 + CA264_10005 0.22 +0.5
2,326,725 + CA264_10005 0.65 +0.9
2,326,725 + CA264_10005 0.65 -0.3
2,326,834 + +0.5
2,326,916 - -0.9
2,326,916 - +0.4
2,326,920 - -0.8
2,326,955 + +0.6
2,326,955 + +0.3
2,326,965 + -1.6
2,326,966 - -0.4
2,326,966 - -1.6
2,326,980 + +0.0
2,327,055 - -0.5
2,327,055 - -0.1
2,327,055 - -1.6
2,327,058 + -0.8
2,327,067 - -2.3
2,327,085 + +0.4
2,327,086 - -1.2
2,327,086 - -0.6
2,327,139 + -1.0
2,327,142 + +0.4
2,327,142 + -1.4
2,327,143 - -1.3
2,327,143 - -1.4
2,327,151 - -0.5
2,327,164 + -1.3
2,327,165 - -0.7
2,327,184 - -2.9
2,327,204 - -0.8
2,327,220 - -0.7
2,327,230 - -0.1
2,327,230 - -0.2
2,327,230 - -1.3
2,327,234 + +0.0
2,327,254 + +0.9
2,327,255 - +1.2
2,327,287 - +0.3

Or see this region's nucleotide sequence