Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09955

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09950 and CA264_09955 are separated by 10 nucleotidesCA264_09955 and CA264_09960 overlap by 4 nucleotidesCA264_09960 and CA264_09965 are separated by 51 nucleotides CA264_09950: CA264_09950 - conjugative transposon protein TraJ, at 2,317,188 to 2,318,399 _09950 CA264_09955: CA264_09955 - hypothetical protein, at 2,318,410 to 2,319,039 _09955 CA264_09960: CA264_09960 - hypothetical protein, at 2,319,036 to 2,319,689 _09960 CA264_09965: CA264_09965 - conjugal transfer protein TraI, at 2,319,741 to 2,320,418 _09965 Position (kb) 2318 2319 2320Strain fitness (log2 ratio) -3 -2 -1 0 1at 2317.498 kb on + strand, within CA264_09950at 2317.499 kb on - strand, within CA264_09950at 2317.627 kb on + strand, within CA264_09950at 2317.664 kb on + strand, within CA264_09950at 2317.774 kb on + strand, within CA264_09950at 2317.774 kb on + strand, within CA264_09950at 2317.912 kb on + strand, within CA264_09950at 2317.913 kb on - strand, within CA264_09950at 2317.919 kb on - strand, within CA264_09950at 2317.957 kb on + strand, within CA264_09950at 2317.957 kb on + strand, within CA264_09950at 2317.958 kb on - strand, within CA264_09950at 2318.124 kb on + strand, within CA264_09950at 2318.373 kb on + strandat 2318.374 kb on - strandat 2318.376 kb on + strandat 2318.376 kb on + strandat 2318.376 kb on + strandat 2318.377 kb on - strandat 2318.421 kb on + strandat 2318.669 kb on + strand, within CA264_09955at 2318.800 kb on + strand, within CA264_09955at 2318.800 kb on + strand, within CA264_09955at 2318.801 kb on - strand, within CA264_09955at 2319.457 kb on + strand, within CA264_09960at 2319.457 kb on + strand, within CA264_09960at 2319.458 kb on - strand, within CA264_09960at 2319.544 kb on + strand, within CA264_09960at 2319.545 kb on - strand, within CA264_09960at 2319.545 kb on - strand, within CA264_09960at 2319.587 kb on - strand, within CA264_09960at 2319.673 kb on - strandat 2319.673 kb on - strandat 2319.673 kb on - strandat 2319.689 kb on + strandat 2319.689 kb on + strandat 2319.713 kb on + strandat 2319.714 kb on - strandat 2319.942 kb on + strand, within CA264_09965at 2319.942 kb on + strand, within CA264_09965at 2319.997 kb on + strand, within CA264_09965at 2319.998 kb on - strand, within CA264_09965

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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2,317,498 + CA264_09950 0.26 +0.5
2,317,499 - CA264_09950 0.26 +0.4
2,317,627 + CA264_09950 0.36 -1.1
2,317,664 + CA264_09950 0.39 +0.3
2,317,774 + CA264_09950 0.48 -0.9
2,317,774 + CA264_09950 0.48 +0.3
2,317,912 + CA264_09950 0.60 -0.3
2,317,913 - CA264_09950 0.60 -0.5
2,317,919 - CA264_09950 0.60 -1.3
2,317,957 + CA264_09950 0.63 -0.4
2,317,957 + CA264_09950 0.63 -1.5
2,317,958 - CA264_09950 0.64 +0.3
2,318,124 + CA264_09950 0.77 -0.2
2,318,373 + -0.6
2,318,374 - -0.7
2,318,376 + -1.2
2,318,376 + +0.3
2,318,376 + -0.2
2,318,377 - -1.0
2,318,421 + +1.2
2,318,669 + CA264_09955 0.41 -1.9
2,318,800 + CA264_09955 0.62 -0.9
2,318,800 + CA264_09955 0.62 -0.7
2,318,801 - CA264_09955 0.62 -1.0
2,319,457 + CA264_09960 0.64 -0.1
2,319,457 + CA264_09960 0.64 -0.9
2,319,458 - CA264_09960 0.65 +0.8
2,319,544 + CA264_09960 0.78 -1.1
2,319,545 - CA264_09960 0.78 +0.9
2,319,545 - CA264_09960 0.78 -2.1
2,319,587 - CA264_09960 0.84 -0.5
2,319,673 - -1.7
2,319,673 - -1.6
2,319,673 - -2.8
2,319,689 + -0.2
2,319,689 + +0.8
2,319,713 + +1.2
2,319,714 - -1.7
2,319,942 + CA264_09965 0.30 -1.0
2,319,942 + CA264_09965 0.30 -0.9
2,319,997 + CA264_09965 0.38 +0.3
2,319,998 - CA264_09965 0.38 -1.3

Or see this region's nucleotide sequence