Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08240

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_08235 and CA264_08240 are separated by 76 nucleotidesCA264_08240 and CA264_08245 are separated by 102 nucleotides CA264_08235: CA264_08235 - hypothetical protein, at 1,903,991 to 1,904,581 _08235 CA264_08240: CA264_08240 - hypothetical protein, at 1,904,658 to 1,905,257 _08240 CA264_08245: CA264_08245 - deoxyribonuclease HsdR, at 1,905,360 to 1,906,865 _08245 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1903.700 kb on - strandat 1903.700 kb on - strandat 1903.700 kb on - strandat 1903.703 kb on + strandat 1903.707 kb on - strandat 1903.741 kb on + strandat 1903.742 kb on - strandat 1903.742 kb on - strandat 1903.841 kb on - strandat 1903.875 kb on + strandat 1903.957 kb on - strandat 1903.959 kb on - strandat 1903.968 kb on + strandat 1903.970 kb on + strandat 1903.970 kb on + strandat 1903.970 kb on + strandat 1903.970 kb on + strandat 1903.971 kb on - strandat 1903.971 kb on - strandat 1903.971 kb on - strandat 1904.009 kb on + strandat 1904.009 kb on + strandat 1904.046 kb on + strandat 1904.047 kb on - strandat 1904.080 kb on + strand, within CA264_08235at 1904.088 kb on + strand, within CA264_08235at 1904.162 kb on - strand, within CA264_08235at 1904.163 kb on + strand, within CA264_08235at 1904.163 kb on + strand, within CA264_08235at 1904.164 kb on - strand, within CA264_08235at 1904.164 kb on - strand, within CA264_08235at 1904.180 kb on - strand, within CA264_08235at 1904.238 kb on + strand, within CA264_08235at 1904.238 kb on + strand, within CA264_08235at 1904.239 kb on - strand, within CA264_08235at 1904.270 kb on + strand, within CA264_08235at 1904.556 kb on - strandat 1904.556 kb on - strandat 1904.558 kb on + strandat 1904.560 kb on + strandat 1904.560 kb on + strandat 1904.561 kb on - strandat 1904.567 kb on + strandat 1904.567 kb on + strandat 1904.568 kb on - strandat 1904.570 kb on + strandat 1904.571 kb on - strandat 1904.571 kb on - strandat 1904.571 kb on - strandat 1904.571 kb on - strandat 1904.580 kb on - strandat 1904.592 kb on + strandat 1904.592 kb on + strandat 1904.619 kb on + strandat 1904.982 kb on + strand, within CA264_08240at 1904.982 kb on + strand, within CA264_08240at 1904.982 kb on + strand, within CA264_08240at 1904.982 kb on + strand, within CA264_08240at 1904.982 kb on + strand, within CA264_08240at 1904.982 kb on + strand, within CA264_08240at 1904.982 kb on + strand, within CA264_08240at 1905.015 kb on - strand, within CA264_08240at 1905.025 kb on - strand, within CA264_08240at 1905.042 kb on + strand, within CA264_08240at 1905.043 kb on - strand, within CA264_08240at 1905.069 kb on + strand, within CA264_08240at 1905.069 kb on + strand, within CA264_08240at 1905.088 kb on - strand, within CA264_08240at 1905.188 kb on - strand, within CA264_08240at 1905.300 kb on - strandat 1905.339 kb on + strandat 1905.340 kb on - strandat 1905.355 kb on + strandat 1905.378 kb on + strandat 1905.379 kb on + strandat 1905.382 kb on + strandat 1905.382 kb on + strandat 1905.382 kb on + strandat 1905.436 kb on - strandat 1905.448 kb on + strandat 1905.489 kb on + strandat 1905.516 kb on + strand, within CA264_08245at 1905.516 kb on + strand, within CA264_08245at 1905.517 kb on - strand, within CA264_08245at 1905.517 kb on - strand, within CA264_08245at 1905.518 kb on + strand, within CA264_08245at 1905.542 kb on + strand, within CA264_08245at 1905.573 kb on + strand, within CA264_08245at 1905.573 kb on + strand, within CA264_08245at 1905.574 kb on - strand, within CA264_08245at 1905.728 kb on - strand, within CA264_08245at 1905.728 kb on - strand, within CA264_08245at 1905.738 kb on - strand, within CA264_08245at 1905.871 kb on - strand, within CA264_08245at 1905.958 kb on - strand, within CA264_08245at 1905.969 kb on + strand, within CA264_08245at 1906.014 kb on - strand, within CA264_08245at 1906.044 kb on - strand, within CA264_08245at 1906.074 kb on - strand, within CA264_08245at 1906.076 kb on + strand, within CA264_08245at 1906.077 kb on - strand, within CA264_08245at 1906.077 kb on - strand, within CA264_08245at 1906.086 kb on + strand, within CA264_08245at 1906.087 kb on - strand, within CA264_08245at 1906.087 kb on - strand, within CA264_08245at 1906.154 kb on + strand, within CA264_08245at 1906.155 kb on - strand, within CA264_08245at 1906.169 kb on + strand, within CA264_08245at 1906.187 kb on + strand, within CA264_08245at 1906.190 kb on + strand, within CA264_08245at 1906.190 kb on + strand, within CA264_08245at 1906.202 kb on + strand, within CA264_08245at 1906.254 kb on - strand, within CA264_08245at 1906.254 kb on - strand, within CA264_08245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
remove
1,903,700 - -0.9
1,903,700 - -1.1
1,903,700 - +2.1
1,903,703 + +0.6
1,903,707 - -0.1
1,903,741 + -0.1
1,903,742 - +1.1
1,903,742 - -0.0
1,903,841 - -0.8
1,903,875 + -0.6
1,903,957 - -1.3
1,903,959 - -0.4
1,903,968 + -0.6
1,903,970 + -0.0
1,903,970 + -0.6
1,903,970 + -1.0
1,903,970 + -1.7
1,903,971 - -2.5
1,903,971 - +0.2
1,903,971 - -0.5
1,904,009 + -1.4
1,904,009 + -0.6
1,904,046 + -1.5
1,904,047 - +1.7
1,904,080 + CA264_08235 0.15 -0.5
1,904,088 + CA264_08235 0.16 -1.5
1,904,162 - CA264_08235 0.29 +0.5
1,904,163 + CA264_08235 0.29 -1.7
1,904,163 + CA264_08235 0.29 -0.6
1,904,164 - CA264_08235 0.29 -1.1
1,904,164 - CA264_08235 0.29 -0.7
1,904,180 - CA264_08235 0.32 +0.9
1,904,238 + CA264_08235 0.42 -0.7
1,904,238 + CA264_08235 0.42 +0.3
1,904,239 - CA264_08235 0.42 +1.0
1,904,270 + CA264_08235 0.47 -3.3
1,904,556 - +0.7
1,904,556 - -0.4
1,904,558 + -0.1
1,904,560 + -1.5
1,904,560 + -1.0
1,904,561 - -0.1
1,904,567 + -2.4
1,904,567 + -0.8
1,904,568 - +0.5
1,904,570 + -0.1
1,904,571 - +0.2
1,904,571 - +0.3
1,904,571 - +0.2
1,904,571 - -0.0
1,904,580 - -0.2
1,904,592 + -0.8
1,904,592 + -0.9
1,904,619 + -0.6
1,904,982 + CA264_08240 0.54 -0.4
1,904,982 + CA264_08240 0.54 -1.6
1,904,982 + CA264_08240 0.54 -1.5
1,904,982 + CA264_08240 0.54 -1.2
1,904,982 + CA264_08240 0.54 -0.9
1,904,982 + CA264_08240 0.54 -0.3
1,904,982 + CA264_08240 0.54 -1.3
1,905,015 - CA264_08240 0.59 +1.0
1,905,025 - CA264_08240 0.61 +0.5
1,905,042 + CA264_08240 0.64 -2.5
1,905,043 - CA264_08240 0.64 +1.5
1,905,069 + CA264_08240 0.69 -1.2
1,905,069 + CA264_08240 0.69 +0.1
1,905,088 - CA264_08240 0.72 -0.8
1,905,188 - CA264_08240 0.88 +0.4
1,905,300 - +0.1
1,905,339 + +0.1
1,905,340 - -1.2
1,905,355 + -0.4
1,905,378 + -1.0
1,905,379 + -1.6
1,905,382 + -1.4
1,905,382 + -1.3
1,905,382 + +0.4
1,905,436 - -0.8
1,905,448 + +1.5
1,905,489 + -0.0
1,905,516 + CA264_08245 0.10 -0.5
1,905,516 + CA264_08245 0.10 -0.5
1,905,517 - CA264_08245 0.10 +0.3
1,905,517 - CA264_08245 0.10 -0.5
1,905,518 + CA264_08245 0.10 +0.1
1,905,542 + CA264_08245 0.12 +0.4
1,905,573 + CA264_08245 0.14 +0.9
1,905,573 + CA264_08245 0.14 +0.5
1,905,574 - CA264_08245 0.14 -0.6
1,905,728 - CA264_08245 0.24 -1.4
1,905,728 - CA264_08245 0.24 -1.8
1,905,738 - CA264_08245 0.25 +0.3
1,905,871 - CA264_08245 0.34 -1.7
1,905,958 - CA264_08245 0.40 +0.1
1,905,969 + CA264_08245 0.40 +0.9
1,906,014 - CA264_08245 0.43 -1.1
1,906,044 - CA264_08245 0.45 -1.5
1,906,074 - CA264_08245 0.47 -2.6
1,906,076 + CA264_08245 0.48 +0.1
1,906,077 - CA264_08245 0.48 +1.0
1,906,077 - CA264_08245 0.48 +0.9
1,906,086 + CA264_08245 0.48 +0.8
1,906,087 - CA264_08245 0.48 -1.2
1,906,087 - CA264_08245 0.48 -0.9
1,906,154 + CA264_08245 0.53 +1.3
1,906,155 - CA264_08245 0.53 -1.5
1,906,169 + CA264_08245 0.54 +1.5
1,906,187 + CA264_08245 0.55 -0.1
1,906,190 + CA264_08245 0.55 +0.5
1,906,190 + CA264_08245 0.55 -1.0
1,906,202 + CA264_08245 0.56 -0.7
1,906,254 - CA264_08245 0.59 -1.6
1,906,254 - CA264_08245 0.59 -0.4

Or see this region's nucleotide sequence