Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07540

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07535 and CA264_07540 are separated by 273 nucleotidesCA264_07540 and CA264_07545 are separated by 96 nucleotidesCA264_07545 and CA264_07550 are separated by 181 nucleotides CA264_07535: CA264_07535 - sigma-54-dependent Fis family transcriptional regulator, at 1,744,952 to 1,746,337 _07535 CA264_07540: CA264_07540 - hypothetical protein, at 1,746,611 to 1,749,013 _07540 CA264_07545: CA264_07545 - pirin family protein, at 1,749,110 to 1,749,829 _07545 CA264_07550: CA264_07550 - transcriptional regulator, at 1,750,011 to 1,750,787 _07550 Position (kb) 1746 1747 1748 1749 1750Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1745.703 kb on - strand, within CA264_07535at 1745.822 kb on - strand, within CA264_07535at 1745.822 kb on - strand, within CA264_07535at 1745.825 kb on + strand, within CA264_07535at 1745.825 kb on + strand, within CA264_07535at 1745.825 kb on + strand, within CA264_07535at 1745.826 kb on - strand, within CA264_07535at 1745.830 kb on + strand, within CA264_07535at 1745.848 kb on + strand, within CA264_07535at 1745.849 kb on - strand, within CA264_07535at 1745.940 kb on + strand, within CA264_07535at 1745.941 kb on - strand, within CA264_07535at 1746.009 kb on - strand, within CA264_07535at 1746.070 kb on + strand, within CA264_07535at 1746.070 kb on + strand, within CA264_07535at 1746.081 kb on - strand, within CA264_07535at 1746.116 kb on - strand, within CA264_07535at 1746.158 kb on - strand, within CA264_07535at 1746.337 kb on + strandat 1746.337 kb on + strandat 1746.338 kb on - strandat 1746.341 kb on + strandat 1746.342 kb on - strandat 1746.342 kb on - strandat 1746.344 kb on - strandat 1746.344 kb on - strandat 1746.356 kb on + strandat 1746.360 kb on + strandat 1746.360 kb on + strandat 1746.361 kb on - strandat 1746.368 kb on + strandat 1746.369 kb on - strandat 1746.379 kb on + strandat 1746.492 kb on - strandat 1746.492 kb on - strandat 1746.492 kb on - strandat 1746.492 kb on - strandat 1746.501 kb on + strandat 1746.530 kb on - strandat 1746.578 kb on + strandat 1746.591 kb on + strandat 1746.591 kb on + strandat 1746.611 kb on - strandat 1746.611 kb on - strandat 1746.750 kb on - strandat 1746.750 kb on - strandat 1746.821 kb on - strandat 1746.821 kb on - strandat 1746.821 kb on - strandat 1746.852 kb on - strand, within CA264_07540at 1746.897 kb on + strand, within CA264_07540at 1746.921 kb on + strand, within CA264_07540at 1746.922 kb on - strand, within CA264_07540at 1746.970 kb on + strand, within CA264_07540at 1747.039 kb on - strand, within CA264_07540at 1747.052 kb on - strand, within CA264_07540at 1747.052 kb on - strand, within CA264_07540at 1747.093 kb on + strand, within CA264_07540at 1747.128 kb on + strand, within CA264_07540at 1747.148 kb on + strand, within CA264_07540at 1747.149 kb on - strand, within CA264_07540at 1747.149 kb on - strand, within CA264_07540at 1747.172 kb on - strand, within CA264_07540at 1747.224 kb on - strand, within CA264_07540at 1747.296 kb on + strand, within CA264_07540at 1747.306 kb on + strand, within CA264_07540at 1747.307 kb on - strand, within CA264_07540at 1747.307 kb on - strand, within CA264_07540at 1747.307 kb on - strand, within CA264_07540at 1747.336 kb on - strand, within CA264_07540at 1747.421 kb on + strand, within CA264_07540at 1747.421 kb on + strand, within CA264_07540at 1747.478 kb on - strand, within CA264_07540at 1747.513 kb on - strand, within CA264_07540at 1747.532 kb on - strand, within CA264_07540at 1747.677 kb on + strand, within CA264_07540at 1747.677 kb on + strand, within CA264_07540at 1747.683 kb on + strand, within CA264_07540at 1747.700 kb on + strand, within CA264_07540at 1747.701 kb on - strand, within CA264_07540at 1747.735 kb on + strand, within CA264_07540at 1747.735 kb on + strand, within CA264_07540at 1747.735 kb on + strand, within CA264_07540at 1747.741 kb on - strand, within CA264_07540at 1747.744 kb on - strand, within CA264_07540at 1747.770 kb on + strand, within CA264_07540at 1747.831 kb on + strand, within CA264_07540at 1747.831 kb on + strand, within CA264_07540at 1747.832 kb on - strand, within CA264_07540at 1747.844 kb on - strand, within CA264_07540at 1747.914 kb on + strand, within CA264_07540at 1747.946 kb on - strand, within CA264_07540at 1748.059 kb on - strand, within CA264_07540at 1748.083 kb on - strand, within CA264_07540at 1748.141 kb on - strand, within CA264_07540at 1748.141 kb on - strand, within CA264_07540at 1748.148 kb on - strand, within CA264_07540at 1748.454 kb on + strand, within CA264_07540at 1748.455 kb on - strand, within CA264_07540at 1748.613 kb on - strand, within CA264_07540at 1748.613 kb on - strand, within CA264_07540at 1748.707 kb on + strand, within CA264_07540at 1748.734 kb on - strand, within CA264_07540at 1748.749 kb on + strand, within CA264_07540at 1748.843 kb on + strandat 1748.846 kb on + strandat 1748.847 kb on - strandat 1748.848 kb on + strandat 1748.848 kb on + strandat 1748.848 kb on + strandat 1748.849 kb on - strandat 1748.849 kb on - strandat 1748.849 kb on - strandat 1748.874 kb on - strandat 1748.874 kb on - strandat 1748.879 kb on + strandat 1748.886 kb on + strandat 1748.886 kb on + strandat 1748.886 kb on + strandat 1748.910 kb on + strandat 1748.911 kb on - strandat 1749.060 kb on + strandat 1749.061 kb on - strandat 1749.261 kb on + strand, within CA264_07545at 1749.261 kb on + strand, within CA264_07545at 1749.262 kb on - strand, within CA264_07545at 1749.262 kb on - strand, within CA264_07545at 1749.262 kb on - strand, within CA264_07545at 1749.283 kb on + strand, within CA264_07545at 1749.292 kb on + strand, within CA264_07545at 1749.386 kb on + strand, within CA264_07545at 1749.403 kb on + strand, within CA264_07545at 1749.442 kb on - strand, within CA264_07545at 1749.738 kb on + strand, within CA264_07545at 1749.739 kb on - strand, within CA264_07545at 1749.846 kb on - strandat 1749.862 kb on - strandat 1749.890 kb on + strandat 1749.945 kb on - strandat 1749.978 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,745,703 - CA264_07535 0.54 -2.0
1,745,822 - CA264_07535 0.63 -0.7
1,745,822 - CA264_07535 0.63 -0.3
1,745,825 + CA264_07535 0.63 +0.8
1,745,825 + CA264_07535 0.63 +2.8
1,745,825 + CA264_07535 0.63 +1.0
1,745,826 - CA264_07535 0.63 -0.1
1,745,830 + CA264_07535 0.63 +0.8
1,745,848 + CA264_07535 0.65 -0.3
1,745,849 - CA264_07535 0.65 +1.1
1,745,940 + CA264_07535 0.71 -0.7
1,745,941 - CA264_07535 0.71 -1.6
1,746,009 - CA264_07535 0.76 +0.1
1,746,070 + CA264_07535 0.81 +0.5
1,746,070 + CA264_07535 0.81 -0.1
1,746,081 - CA264_07535 0.81 -1.0
1,746,116 - CA264_07535 0.84 -1.2
1,746,158 - CA264_07535 0.87 -1.2
1,746,337 + -0.1
1,746,337 + +0.1
1,746,338 - -0.5
1,746,341 + +1.8
1,746,342 - -0.3
1,746,342 - -1.4
1,746,344 - -0.6
1,746,344 - -0.3
1,746,356 + +1.0
1,746,360 + +0.2
1,746,360 + +1.3
1,746,361 - +0.7
1,746,368 + +0.4
1,746,369 - -1.4
1,746,379 + +1.8
1,746,492 - +0.9
1,746,492 - -0.8
1,746,492 - -0.3
1,746,492 - -0.0
1,746,501 + +0.9
1,746,530 - -2.1
1,746,578 + +0.4
1,746,591 + -0.2
1,746,591 + -0.1
1,746,611 - +0.4
1,746,611 - -0.2
1,746,750 - -1.6
1,746,750 - -0.6
1,746,821 - -0.9
1,746,821 - -1.5
1,746,821 - +0.1
1,746,852 - CA264_07540 0.10 +1.6
1,746,897 + CA264_07540 0.12 -0.0
1,746,921 + CA264_07540 0.13 +0.7
1,746,922 - CA264_07540 0.13 -0.4
1,746,970 + CA264_07540 0.15 +0.3
1,747,039 - CA264_07540 0.18 -0.6
1,747,052 - CA264_07540 0.18 -0.2
1,747,052 - CA264_07540 0.18 -0.6
1,747,093 + CA264_07540 0.20 -0.9
1,747,128 + CA264_07540 0.22 +0.4
1,747,148 + CA264_07540 0.22 +0.7
1,747,149 - CA264_07540 0.22 +0.7
1,747,149 - CA264_07540 0.22 +0.3
1,747,172 - CA264_07540 0.23 +1.0
1,747,224 - CA264_07540 0.26 -2.3
1,747,296 + CA264_07540 0.29 -0.3
1,747,306 + CA264_07540 0.29 -0.0
1,747,307 - CA264_07540 0.29 -0.3
1,747,307 - CA264_07540 0.29 -0.4
1,747,307 - CA264_07540 0.29 +1.8
1,747,336 - CA264_07540 0.30 +0.8
1,747,421 + CA264_07540 0.34 +0.8
1,747,421 + CA264_07540 0.34 +0.8
1,747,478 - CA264_07540 0.36 +0.1
1,747,513 - CA264_07540 0.38 +0.6
1,747,532 - CA264_07540 0.38 +0.1
1,747,677 + CA264_07540 0.44 -0.4
1,747,677 + CA264_07540 0.44 -0.8
1,747,683 + CA264_07540 0.45 -0.5
1,747,700 + CA264_07540 0.45 -0.1
1,747,701 - CA264_07540 0.45 +0.4
1,747,735 + CA264_07540 0.47 +0.5
1,747,735 + CA264_07540 0.47 +0.2
1,747,735 + CA264_07540 0.47 -0.1
1,747,741 - CA264_07540 0.47 +1.9
1,747,744 - CA264_07540 0.47 -0.8
1,747,770 + CA264_07540 0.48 -0.6
1,747,831 + CA264_07540 0.51 -0.9
1,747,831 + CA264_07540 0.51 +1.0
1,747,832 - CA264_07540 0.51 +1.0
1,747,844 - CA264_07540 0.51 +0.2
1,747,914 + CA264_07540 0.54 -0.7
1,747,946 - CA264_07540 0.56 +2.8
1,748,059 - CA264_07540 0.60 -0.2
1,748,083 - CA264_07540 0.61 +0.2
1,748,141 - CA264_07540 0.64 -0.6
1,748,141 - CA264_07540 0.64 -1.0
1,748,148 - CA264_07540 0.64 -0.0
1,748,454 + CA264_07540 0.77 +0.0
1,748,455 - CA264_07540 0.77 -0.7
1,748,613 - CA264_07540 0.83 -0.8
1,748,613 - CA264_07540 0.83 +0.3
1,748,707 + CA264_07540 0.87 -0.0
1,748,734 - CA264_07540 0.88 +0.6
1,748,749 + CA264_07540 0.89 -0.4
1,748,843 + -1.5
1,748,846 + -2.8
1,748,847 - +0.1
1,748,848 + -2.1
1,748,848 + -1.9
1,748,848 + -0.5
1,748,849 - +0.9
1,748,849 - +0.3
1,748,849 - +1.1
1,748,874 - -0.5
1,748,874 - +1.4
1,748,879 + -0.9
1,748,886 + +0.4
1,748,886 + -2.5
1,748,886 + -2.1
1,748,910 + -2.1
1,748,911 - +1.3
1,749,060 + +1.9
1,749,061 - +0.6
1,749,261 + CA264_07545 0.21 +0.9
1,749,261 + CA264_07545 0.21 +0.1
1,749,262 - CA264_07545 0.21 -1.5
1,749,262 - CA264_07545 0.21 -0.6
1,749,262 - CA264_07545 0.21 -0.4
1,749,283 + CA264_07545 0.24 -2.1
1,749,292 + CA264_07545 0.25 -0.2
1,749,386 + CA264_07545 0.38 +0.4
1,749,403 + CA264_07545 0.41 +0.5
1,749,442 - CA264_07545 0.46 -0.5
1,749,738 + CA264_07545 0.87 -0.6
1,749,739 - CA264_07545 0.87 -0.6
1,749,846 - -0.1
1,749,862 - +1.3
1,749,890 + +1.2
1,749,945 - -0.2
1,749,978 + -0.9

Or see this region's nucleotide sequence