Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07195

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07185 and CA264_07190 are separated by 292 nucleotidesCA264_07190 and CA264_07195 are separated by 77 nucleotidesCA264_07195 and CA264_07200 are separated by 316 nucleotides CA264_07185: CA264_07185 - TetR family transcriptional regulator, at 1,660,804 to 1,661,439 _07185 CA264_07190: CA264_07190 - hypothetical protein, at 1,661,732 to 1,662,331 _07190 CA264_07195: CA264_07195 - hypothetical protein, at 1,662,409 to 1,662,903 _07195 CA264_07200: CA264_07200 - glutamate dehydrogenase, at 1,663,220 to 1,664,644 _07200 Position (kb) 1662 1663Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1661.500 kb on + strandat 1661.583 kb on + strandat 1661.594 kb on + strandat 1661.594 kb on + strandat 1661.594 kb on + strandat 1661.594 kb on + strandat 1661.658 kb on - strandat 1661.665 kb on + strandat 1661.672 kb on - strandat 1661.682 kb on + strandat 1661.739 kb on + strandat 1661.756 kb on + strandat 1661.756 kb on + strandat 1661.783 kb on - strandat 1661.824 kb on + strand, within CA264_07190at 1661.825 kb on - strand, within CA264_07190at 1661.864 kb on - strand, within CA264_07190at 1661.884 kb on - strand, within CA264_07190at 1661.950 kb on + strand, within CA264_07190at 1661.983 kb on + strand, within CA264_07190at 1661.983 kb on + strand, within CA264_07190at 1662.000 kb on + strand, within CA264_07190at 1662.000 kb on + strand, within CA264_07190at 1662.004 kb on + strand, within CA264_07190at 1662.004 kb on + strand, within CA264_07190at 1662.004 kb on + strand, within CA264_07190at 1662.004 kb on + strand, within CA264_07190at 1662.004 kb on + strand, within CA264_07190at 1662.005 kb on - strand, within CA264_07190at 1662.005 kb on - strand, within CA264_07190at 1662.010 kb on - strand, within CA264_07190at 1662.026 kb on + strand, within CA264_07190at 1662.026 kb on + strand, within CA264_07190at 1662.033 kb on + strand, within CA264_07190at 1662.034 kb on - strand, within CA264_07190at 1662.089 kb on + strand, within CA264_07190at 1662.116 kb on - strand, within CA264_07190at 1662.252 kb on - strand, within CA264_07190at 1662.376 kb on - strandat 1662.376 kb on - strandat 1662.402 kb on + strandat 1662.405 kb on + strandat 1662.447 kb on - strandat 1662.581 kb on - strand, within CA264_07195at 1662.708 kb on + strand, within CA264_07195at 1662.812 kb on + strand, within CA264_07195at 1662.813 kb on - strand, within CA264_07195at 1662.937 kb on + strandat 1662.937 kb on + strandat 1662.938 kb on - strandat 1662.949 kb on + strandat 1662.952 kb on - strandat 1663.002 kb on + strandat 1663.047 kb on + strandat 1663.047 kb on + strandat 1663.070 kb on + strandat 1663.071 kb on - strandat 1663.072 kb on + strandat 1663.072 kb on + strandat 1663.072 kb on + strandat 1663.073 kb on - strandat 1663.075 kb on + strandat 1663.076 kb on - strandat 1663.087 kb on - strandat 1663.090 kb on + strandat 1663.090 kb on + strandat 1663.092 kb on + strandat 1663.094 kb on + strandat 1663.094 kb on + strandat 1663.094 kb on + strandat 1663.095 kb on - strandat 1663.119 kb on + strandat 1663.184 kb on - strandat 1663.212 kb on - strandat 1663.220 kb on - strandat 1663.220 kb on - strandat 1663.272 kb on - strandat 1663.293 kb on - strandat 1663.347 kb on - strandat 1663.349 kb on - strandat 1663.372 kb on - strand, within CA264_07200at 1663.372 kb on - strand, within CA264_07200at 1663.383 kb on + strand, within CA264_07200at 1663.383 kb on + strand, within CA264_07200at 1663.464 kb on + strand, within CA264_07200at 1663.465 kb on - strand, within CA264_07200at 1663.465 kb on - strand, within CA264_07200at 1663.498 kb on + strand, within CA264_07200at 1663.642 kb on - strand, within CA264_07200at 1663.674 kb on - strand, within CA264_07200at 1663.823 kb on + strand, within CA264_07200at 1663.824 kb on - strand, within CA264_07200at 1663.824 kb on - strand, within CA264_07200at 1663.864 kb on + strand, within CA264_07200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,661,500 + -0.0
1,661,583 + +1.4
1,661,594 + +0.1
1,661,594 + +0.5
1,661,594 + +0.8
1,661,594 + +0.3
1,661,658 - +3.4
1,661,665 + -2.0
1,661,672 - +2.4
1,661,682 + -0.9
1,661,739 + -0.3
1,661,756 + +1.1
1,661,756 + +0.0
1,661,783 - +2.2
1,661,824 + CA264_07190 0.15 -1.2
1,661,825 - CA264_07190 0.15 +2.2
1,661,864 - CA264_07190 0.22 +2.2
1,661,884 - CA264_07190 0.25 +1.9
1,661,950 + CA264_07190 0.36 -1.8
1,661,983 + CA264_07190 0.42 -1.0
1,661,983 + CA264_07190 0.42 +0.8
1,662,000 + CA264_07190 0.45 -0.9
1,662,000 + CA264_07190 0.45 +0.3
1,662,004 + CA264_07190 0.45 -0.4
1,662,004 + CA264_07190 0.45 -1.6
1,662,004 + CA264_07190 0.45 -2.8
1,662,004 + CA264_07190 0.45 -1.7
1,662,004 + CA264_07190 0.45 -2.1
1,662,005 - CA264_07190 0.46 +2.2
1,662,005 - CA264_07190 0.46 +1.4
1,662,010 - CA264_07190 0.46 -0.4
1,662,026 + CA264_07190 0.49 -0.8
1,662,026 + CA264_07190 0.49 -0.7
1,662,033 + CA264_07190 0.50 -1.1
1,662,034 - CA264_07190 0.50 +0.8
1,662,089 + CA264_07190 0.59 +0.6
1,662,116 - CA264_07190 0.64 +1.1
1,662,252 - CA264_07190 0.87 +2.2
1,662,376 - +0.3
1,662,376 - +0.8
1,662,402 + +1.4
1,662,405 + -0.2
1,662,447 - -0.8
1,662,581 - CA264_07195 0.35 -1.7
1,662,708 + CA264_07195 0.60 -1.8
1,662,812 + CA264_07195 0.81 +0.1
1,662,813 - CA264_07195 0.82 -2.0
1,662,937 + -2.3
1,662,937 + -1.4
1,662,938 - -2.6
1,662,949 + -1.5
1,662,952 - -1.4
1,663,002 + -1.9
1,663,047 + -2.3
1,663,047 + -0.7
1,663,070 + -1.4
1,663,071 - -1.2
1,663,072 + -0.5
1,663,072 + -1.6
1,663,072 + -1.5
1,663,073 - -3.7
1,663,075 + +0.5
1,663,076 - -1.2
1,663,087 - -1.4
1,663,090 + -0.4
1,663,090 + -3.7
1,663,092 + +1.2
1,663,094 + -2.2
1,663,094 + -0.4
1,663,094 + -0.5
1,663,095 - -0.2
1,663,119 + -1.1
1,663,184 - -0.4
1,663,212 - -2.3
1,663,220 - -3.1
1,663,220 - -2.8
1,663,272 - +0.8
1,663,293 - -0.6
1,663,347 - -2.5
1,663,349 - -1.2
1,663,372 - CA264_07200 0.11 -1.7
1,663,372 - CA264_07200 0.11 -3.5
1,663,383 + CA264_07200 0.11 +0.6
1,663,383 + CA264_07200 0.11 -0.9
1,663,464 + CA264_07200 0.17 -2.6
1,663,465 - CA264_07200 0.17 -0.5
1,663,465 - CA264_07200 0.17 -0.2
1,663,498 + CA264_07200 0.20 -0.8
1,663,642 - CA264_07200 0.30 -0.3
1,663,674 - CA264_07200 0.32 -2.0
1,663,823 + CA264_07200 0.42 -0.5
1,663,824 - CA264_07200 0.42 -1.2
1,663,824 - CA264_07200 0.42 -1.1
1,663,864 + CA264_07200 0.45 -3.7

Or see this region's nucleotide sequence