Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06580

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06570 and CA264_06575 are separated by 45 nucleotidesCA264_06575 and CA264_06580 are separated by 335 nucleotidesCA264_06580 and CA264_06585 are separated by 24 nucleotides CA264_06570: CA264_06570 - DUF4199 domain-containing protein, at 1,514,086 to 1,514,547 _06570 CA264_06575: CA264_06575 - DUF4199 domain-containing protein, at 1,514,593 to 1,515,060 _06575 CA264_06580: CA264_06580 - ABC-F family ATPase, at 1,515,396 to 1,517,021 _06580 CA264_06585: CA264_06585 - hypothetical protein, at 1,517,046 to 1,517,771 _06585 Position (kb) 1515 1516 1517 1518Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1514.407 kb on + strand, within CA264_06570at 1514.408 kb on - strand, within CA264_06570at 1514.408 kb on - strand, within CA264_06570at 1514.408 kb on - strand, within CA264_06570at 1514.488 kb on - strand, within CA264_06570at 1514.583 kb on + strandat 1514.613 kb on + strandat 1514.614 kb on - strandat 1514.614 kb on - strandat 1514.678 kb on + strand, within CA264_06575at 1514.681 kb on - strand, within CA264_06575at 1514.681 kb on - strand, within CA264_06575at 1514.681 kb on - strand, within CA264_06575at 1514.682 kb on + strand, within CA264_06575at 1514.683 kb on - strand, within CA264_06575at 1514.777 kb on - strand, within CA264_06575at 1514.818 kb on + strand, within CA264_06575at 1514.856 kb on - strand, within CA264_06575at 1514.860 kb on + strand, within CA264_06575at 1514.861 kb on - strand, within CA264_06575at 1514.861 kb on - strand, within CA264_06575at 1514.884 kb on - strand, within CA264_06575at 1514.885 kb on + strand, within CA264_06575at 1514.885 kb on + strand, within CA264_06575at 1514.904 kb on + strand, within CA264_06575at 1514.905 kb on - strand, within CA264_06575at 1514.905 kb on - strand, within CA264_06575at 1514.911 kb on + strand, within CA264_06575at 1515.042 kb on - strandat 1515.061 kb on - strandat 1515.074 kb on - strandat 1515.091 kb on + strandat 1515.091 kb on + strandat 1515.092 kb on - strandat 1515.203 kb on + strandat 1515.203 kb on + strandat 1515.298 kb on + strandat 1515.299 kb on - strandat 1515.301 kb on - strandat 1515.301 kb on - strandat 1515.301 kb on - strandat 1515.302 kb on + strandat 1515.331 kb on + strandat 1515.331 kb on + strandat 1515.344 kb on + strandat 1515.378 kb on - strandat 1515.383 kb on + strandat 1515.383 kb on + strandat 1515.384 kb on - strandat 1515.388 kb on - strandat 1515.395 kb on + strandat 1515.404 kb on + strandat 1515.426 kb on + strandat 1515.443 kb on - strandat 1515.483 kb on + strandat 1515.547 kb on + strandat 1515.630 kb on + strand, within CA264_06580at 1515.851 kb on - strand, within CA264_06580at 1515.881 kb on - strand, within CA264_06580at 1515.881 kb on - strand, within CA264_06580at 1515.881 kb on - strand, within CA264_06580at 1515.881 kb on - strand, within CA264_06580at 1515.993 kb on - strand, within CA264_06580at 1516.182 kb on - strand, within CA264_06580at 1516.200 kb on - strand, within CA264_06580at 1516.241 kb on + strand, within CA264_06580at 1516.301 kb on + strand, within CA264_06580at 1516.306 kb on - strand, within CA264_06580at 1516.306 kb on - strand, within CA264_06580at 1516.311 kb on + strand, within CA264_06580at 1516.312 kb on - strand, within CA264_06580at 1516.313 kb on + strand, within CA264_06580at 1516.415 kb on + strand, within CA264_06580at 1516.416 kb on - strand, within CA264_06580at 1516.416 kb on - strand, within CA264_06580at 1516.433 kb on + strand, within CA264_06580at 1516.434 kb on - strand, within CA264_06580at 1516.532 kb on + strand, within CA264_06580at 1516.533 kb on - strand, within CA264_06580at 1516.533 kb on - strand, within CA264_06580at 1516.624 kb on + strand, within CA264_06580at 1516.665 kb on - strand, within CA264_06580at 1516.743 kb on - strand, within CA264_06580at 1516.788 kb on - strand, within CA264_06580at 1516.854 kb on - strand, within CA264_06580at 1516.854 kb on - strand, within CA264_06580at 1516.854 kb on - strand, within CA264_06580at 1516.876 kb on + strandat 1516.876 kb on + strandat 1516.877 kb on - strandat 1516.885 kb on + strandat 1516.905 kb on - strandat 1516.932 kb on - strandat 1516.932 kb on - strandat 1516.951 kb on - strandat 1516.959 kb on + strandat 1517.002 kb on - strandat 1517.019 kb on + strandat 1517.035 kb on + strandat 1517.043 kb on - strandat 1517.097 kb on - strandat 1517.145 kb on + strand, within CA264_06585at 1517.146 kb on - strand, within CA264_06585at 1517.249 kb on - strand, within CA264_06585at 1517.290 kb on + strand, within CA264_06585at 1517.291 kb on - strand, within CA264_06585at 1517.291 kb on - strand, within CA264_06585at 1517.309 kb on + strand, within CA264_06585at 1517.310 kb on - strand, within CA264_06585at 1517.311 kb on + strand, within CA264_06585at 1517.322 kb on + strand, within CA264_06585at 1517.323 kb on - strand, within CA264_06585at 1517.327 kb on - strand, within CA264_06585at 1517.360 kb on + strand, within CA264_06585at 1517.361 kb on - strand, within CA264_06585at 1517.361 kb on - strand, within CA264_06585at 1517.366 kb on + strand, within CA264_06585at 1517.367 kb on - strand, within CA264_06585at 1517.387 kb on + strand, within CA264_06585at 1517.387 kb on + strand, within CA264_06585at 1517.387 kb on + strand, within CA264_06585at 1517.387 kb on + strand, within CA264_06585at 1517.387 kb on + strand, within CA264_06585at 1517.391 kb on + strand, within CA264_06585at 1517.392 kb on - strand, within CA264_06585at 1517.440 kb on - strand, within CA264_06585at 1517.440 kb on - strand, within CA264_06585at 1517.554 kb on + strand, within CA264_06585at 1517.554 kb on + strand, within CA264_06585at 1517.554 kb on + strand, within CA264_06585at 1517.554 kb on + strand, within CA264_06585at 1517.555 kb on - strand, within CA264_06585at 1517.555 kb on - strand, within CA264_06585at 1517.555 kb on - strand, within CA264_06585at 1517.559 kb on - strand, within CA264_06585at 1517.560 kb on + strand, within CA264_06585at 1517.561 kb on - strand, within CA264_06585at 1517.614 kb on + strand, within CA264_06585at 1517.688 kb on + strand, within CA264_06585at 1517.689 kb on - strand, within CA264_06585at 1517.689 kb on - strand, within CA264_06585at 1517.689 kb on - strand, within CA264_06585at 1517.689 kb on - strand, within CA264_06585at 1517.690 kb on + strand, within CA264_06585at 1517.762 kb on + strandat 1517.774 kb on + strandat 1517.780 kb on + strandat 1517.781 kb on - strandat 1517.785 kb on + strandat 1517.786 kb on - strandat 1517.790 kb on + strandat 1517.834 kb on + strandat 1517.835 kb on - strandat 1517.841 kb on + strandat 1517.841 kb on + strandat 1517.841 kb on + strandat 1517.842 kb on - strandat 1517.844 kb on + strandat 1517.845 kb on - strandat 1517.845 kb on - strandat 1517.890 kb on + strandat 1517.890 kb on + strandat 1517.896 kb on + strandat 1517.896 kb on + strandat 1517.896 kb on + strandat 1517.899 kb on + strandat 1517.899 kb on + strandat 1517.975 kb on - strandat 1517.975 kb on - strandat 1517.978 kb on - strandat 1517.980 kb on - strandat 1517.981 kb on + strandat 1517.982 kb on - strandat 1517.982 kb on - strandat 1517.997 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,514,407 + CA264_06570 0.69 +0.9
1,514,408 - CA264_06570 0.70 -0.9
1,514,408 - CA264_06570 0.70 +0.0
1,514,408 - CA264_06570 0.70 -1.1
1,514,488 - CA264_06570 0.87 -0.6
1,514,583 + +1.1
1,514,613 + -1.3
1,514,614 - -0.5
1,514,614 - -0.4
1,514,678 + CA264_06575 0.18 -0.3
1,514,681 - CA264_06575 0.19 -1.8
1,514,681 - CA264_06575 0.19 -2.4
1,514,681 - CA264_06575 0.19 -1.0
1,514,682 + CA264_06575 0.19 +1.4
1,514,683 - CA264_06575 0.19 -1.2
1,514,777 - CA264_06575 0.39 +0.8
1,514,818 + CA264_06575 0.48 -0.8
1,514,856 - CA264_06575 0.56 -2.5
1,514,860 + CA264_06575 0.57 -0.3
1,514,861 - CA264_06575 0.57 -1.7
1,514,861 - CA264_06575 0.57 -0.8
1,514,884 - CA264_06575 0.62 -1.2
1,514,885 + CA264_06575 0.62 -1.8
1,514,885 + CA264_06575 0.62 -1.5
1,514,904 + CA264_06575 0.66 -0.7
1,514,905 - CA264_06575 0.67 -1.4
1,514,905 - CA264_06575 0.67 -1.9
1,514,911 + CA264_06575 0.68 -0.3
1,515,042 - -1.7
1,515,061 - -1.6
1,515,074 - -1.2
1,515,091 + -1.1
1,515,091 + -1.7
1,515,092 - -0.5
1,515,203 + -0.4
1,515,203 + -0.6
1,515,298 + -0.7
1,515,299 - -0.3
1,515,301 - -0.8
1,515,301 - -1.1
1,515,301 - -1.0
1,515,302 + +2.1
1,515,331 + -0.4
1,515,331 + -2.3
1,515,344 + -0.4
1,515,378 - -1.3
1,515,383 + -1.3
1,515,383 + -0.2
1,515,384 - +1.8
1,515,388 - -0.2
1,515,395 + -0.6
1,515,404 + -0.9
1,515,426 + -0.7
1,515,443 - -0.2
1,515,483 + -0.8
1,515,547 + -0.4
1,515,630 + CA264_06580 0.14 -1.5
1,515,851 - CA264_06580 0.28 -1.8
1,515,881 - CA264_06580 0.30 -1.7
1,515,881 - CA264_06580 0.30 -2.9
1,515,881 - CA264_06580 0.30 -0.8
1,515,881 - CA264_06580 0.30 -1.5
1,515,993 - CA264_06580 0.37 -1.1
1,516,182 - CA264_06580 0.48 -1.2
1,516,200 - CA264_06580 0.49 -0.5
1,516,241 + CA264_06580 0.52 -1.4
1,516,301 + CA264_06580 0.56 -3.8
1,516,306 - CA264_06580 0.56 -1.9
1,516,306 - CA264_06580 0.56 -0.9
1,516,311 + CA264_06580 0.56 -1.7
1,516,312 - CA264_06580 0.56 -0.8
1,516,313 + CA264_06580 0.56 -0.3
1,516,415 + CA264_06580 0.63 -1.2
1,516,416 - CA264_06580 0.63 -2.2
1,516,416 - CA264_06580 0.63 -1.3
1,516,433 + CA264_06580 0.64 -2.1
1,516,434 - CA264_06580 0.64 -0.4
1,516,532 + CA264_06580 0.70 +0.3
1,516,533 - CA264_06580 0.70 +2.6
1,516,533 - CA264_06580 0.70 -0.5
1,516,624 + CA264_06580 0.76 -3.7
1,516,665 - CA264_06580 0.78 +0.3
1,516,743 - CA264_06580 0.83 -0.9
1,516,788 - CA264_06580 0.86 -1.0
1,516,854 - CA264_06580 0.90 -3.4
1,516,854 - CA264_06580 0.90 +1.0
1,516,854 - CA264_06580 0.90 -0.9
1,516,876 + -0.3
1,516,876 + -0.2
1,516,877 - -0.1
1,516,885 + -2.6
1,516,905 - -1.2
1,516,932 - -1.3
1,516,932 - +0.3
1,516,951 - -0.2
1,516,959 + -0.7
1,517,002 - -1.8
1,517,019 + -1.9
1,517,035 + -1.5
1,517,043 - -0.9
1,517,097 - -1.2
1,517,145 + CA264_06585 0.14 +0.0
1,517,146 - CA264_06585 0.14 -0.4
1,517,249 - CA264_06585 0.28 +0.2
1,517,290 + CA264_06585 0.34 -1.7
1,517,291 - CA264_06585 0.34 -0.2
1,517,291 - CA264_06585 0.34 -0.8
1,517,309 + CA264_06585 0.36 -2.6
1,517,310 - CA264_06585 0.36 -0.2
1,517,311 + CA264_06585 0.37 -2.4
1,517,322 + CA264_06585 0.38 -1.9
1,517,323 - CA264_06585 0.38 -0.3
1,517,327 - CA264_06585 0.39 +0.6
1,517,360 + CA264_06585 0.43 -1.1
1,517,361 - CA264_06585 0.43 -0.6
1,517,361 - CA264_06585 0.43 +0.1
1,517,366 + CA264_06585 0.44 -0.2
1,517,367 - CA264_06585 0.44 -2.0
1,517,387 + CA264_06585 0.47 -0.3
1,517,387 + CA264_06585 0.47 -1.9
1,517,387 + CA264_06585 0.47 +0.1
1,517,387 + CA264_06585 0.47 -1.4
1,517,387 + CA264_06585 0.47 -2.6
1,517,391 + CA264_06585 0.48 -2.6
1,517,392 - CA264_06585 0.48 -0.6
1,517,440 - CA264_06585 0.54 -1.3
1,517,440 - CA264_06585 0.54 -0.7
1,517,554 + CA264_06585 0.70 -0.6
1,517,554 + CA264_06585 0.70 -3.6
1,517,554 + CA264_06585 0.70 +0.5
1,517,554 + CA264_06585 0.70 -0.4
1,517,555 - CA264_06585 0.70 +0.8
1,517,555 - CA264_06585 0.70 -0.1
1,517,555 - CA264_06585 0.70 -0.8
1,517,559 - CA264_06585 0.71 +0.4
1,517,560 + CA264_06585 0.71 -0.2
1,517,561 - CA264_06585 0.71 -1.3
1,517,614 + CA264_06585 0.78 -2.2
1,517,688 + CA264_06585 0.88 -1.3
1,517,689 - CA264_06585 0.89 -1.6
1,517,689 - CA264_06585 0.89 -3.2
1,517,689 - CA264_06585 0.89 -0.6
1,517,689 - CA264_06585 0.89 -0.2
1,517,690 + CA264_06585 0.89 +0.6
1,517,762 + -1.8
1,517,774 + -1.4
1,517,780 + -2.3
1,517,781 - +1.4
1,517,785 + -1.1
1,517,786 - +0.4
1,517,790 + -2.0
1,517,834 + +0.3
1,517,835 - -1.8
1,517,841 + -0.7
1,517,841 + +1.5
1,517,841 + +0.1
1,517,842 - -1.8
1,517,844 + +0.0
1,517,845 - +0.5
1,517,845 - -2.9
1,517,890 + +0.2
1,517,890 + -0.0
1,517,896 + +1.7
1,517,896 + -0.1
1,517,896 + -0.2
1,517,899 + +0.6
1,517,899 + -1.1
1,517,975 - -0.3
1,517,975 - -2.9
1,517,978 - -0.6
1,517,980 - -1.8
1,517,981 + +0.4
1,517,982 - -0.7
1,517,982 - -1.6
1,517,997 + +1.6

Or see this region's nucleotide sequence