Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06200

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06190 and CA264_06195 are separated by 163 nucleotidesCA264_06195 and CA264_06200 are separated by 589 nucleotidesCA264_06200 and CA264_06205 overlap by 7 nucleotides CA264_06190: CA264_06190 - molecular chaperone DnaJ, at 1,441,650 to 1,442,606 _06190 CA264_06195: CA264_06195 - YqaE/Pmp3 family membrane protein, at 1,442,770 to 1,442,952 _06195 CA264_06200: CA264_06200 - N-formylglutamate amidohydrolase, at 1,443,542 to 1,444,270 _06200 CA264_06205: CA264_06205 - glutamate--cysteine ligase, at 1,444,264 to 1,445,511 _06205 Position (kb) 1443 1444 1445Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1442.600 kb on - strandat 1442.663 kb on - strandat 1442.703 kb on + strandat 1442.765 kb on - strandat 1442.794 kb on + strand, within CA264_06195at 1442.914 kb on + strand, within CA264_06195at 1442.915 kb on - strand, within CA264_06195at 1442.923 kb on + strand, within CA264_06195at 1443.100 kb on + strandat 1443.100 kb on + strandat 1443.101 kb on - strandat 1443.276 kb on + strandat 1443.318 kb on - strandat 1443.365 kb on - strandat 1443.400 kb on - strandat 1443.404 kb on + strandat 1443.404 kb on + strandat 1443.404 kb on + strandat 1443.405 kb on - strandat 1443.405 kb on - strandat 1443.415 kb on - strandat 1443.430 kb on - strandat 1443.438 kb on - strandat 1443.502 kb on + strandat 1443.503 kb on - strandat 1443.503 kb on - strandat 1443.507 kb on + strandat 1443.688 kb on - strand, within CA264_06200at 1443.717 kb on + strand, within CA264_06200at 1443.748 kb on - strand, within CA264_06200at 1443.759 kb on + strand, within CA264_06200at 1443.857 kb on + strand, within CA264_06200at 1443.857 kb on + strand, within CA264_06200at 1443.857 kb on + strand, within CA264_06200at 1443.858 kb on - strand, within CA264_06200at 1443.858 kb on - strand, within CA264_06200at 1443.901 kb on + strand, within CA264_06200at 1443.902 kb on - strand, within CA264_06200at 1443.950 kb on + strand, within CA264_06200at 1443.950 kb on + strand, within CA264_06200at 1443.950 kb on + strand, within CA264_06200at 1443.950 kb on + strand, within CA264_06200at 1443.962 kb on + strand, within CA264_06200at 1443.963 kb on - strand, within CA264_06200at 1443.981 kb on - strand, within CA264_06200at 1443.981 kb on - strand, within CA264_06200at 1443.984 kb on + strand, within CA264_06200at 1443.984 kb on + strand, within CA264_06200at 1443.984 kb on + strand, within CA264_06200at 1443.984 kb on + strand, within CA264_06200at 1443.985 kb on - strand, within CA264_06200at 1443.985 kb on - strand, within CA264_06200at 1443.988 kb on - strand, within CA264_06200at 1444.184 kb on + strand, within CA264_06200at 1444.185 kb on - strand, within CA264_06200at 1444.185 kb on - strand, within CA264_06200at 1444.185 kb on - strand, within CA264_06200at 1444.185 kb on - strand, within CA264_06200at 1444.215 kb on + strandat 1444.253 kb on + strandat 1444.253 kb on + strandat 1444.253 kb on + strandat 1444.257 kb on - strandat 1444.265 kb on + strandat 1444.265 kb on + strandat 1444.265 kb on + strandat 1444.266 kb on - strandat 1444.276 kb on - strandat 1444.327 kb on + strandat 1444.328 kb on - strandat 1444.470 kb on - strand, within CA264_06205at 1444.528 kb on - strand, within CA264_06205at 1444.567 kb on + strand, within CA264_06205at 1444.583 kb on - strand, within CA264_06205at 1444.866 kb on + strand, within CA264_06205at 1445.060 kb on + strand, within CA264_06205at 1445.061 kb on - strand, within CA264_06205at 1445.061 kb on - strand, within CA264_06205at 1445.141 kb on + strand, within CA264_06205at 1445.250 kb on + strand, within CA264_06205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,442,600 - -0.8
1,442,663 - +0.3
1,442,703 + -1.5
1,442,765 - -1.1
1,442,794 + CA264_06195 0.13 +3.1
1,442,914 + CA264_06195 0.79 +0.4
1,442,915 - CA264_06195 0.79 -0.7
1,442,923 + CA264_06195 0.84 +0.2
1,443,100 + -1.4
1,443,100 + +0.4
1,443,101 - -3.2
1,443,276 + +0.4
1,443,318 - -1.3
1,443,365 - -0.6
1,443,400 - -2.5
1,443,404 + +1.7
1,443,404 + -0.5
1,443,404 + -0.3
1,443,405 - -0.2
1,443,405 - +0.7
1,443,415 - -2.6
1,443,430 - +0.9
1,443,438 - +0.1
1,443,502 + +0.7
1,443,503 - -1.5
1,443,503 - -0.7
1,443,507 + -1.0
1,443,688 - CA264_06200 0.20 -2.3
1,443,717 + CA264_06200 0.24 -0.7
1,443,748 - CA264_06200 0.28 -0.2
1,443,759 + CA264_06200 0.30 -1.3
1,443,857 + CA264_06200 0.43 -0.0
1,443,857 + CA264_06200 0.43 -0.1
1,443,857 + CA264_06200 0.43 +0.6
1,443,858 - CA264_06200 0.43 -2.1
1,443,858 - CA264_06200 0.43 +0.3
1,443,901 + CA264_06200 0.49 -0.5
1,443,902 - CA264_06200 0.49 -1.1
1,443,950 + CA264_06200 0.56 +0.6
1,443,950 + CA264_06200 0.56 +0.0
1,443,950 + CA264_06200 0.56 -0.0
1,443,950 + CA264_06200 0.56 -0.0
1,443,962 + CA264_06200 0.58 -0.5
1,443,963 - CA264_06200 0.58 -1.0
1,443,981 - CA264_06200 0.60 +0.4
1,443,981 - CA264_06200 0.60 -2.5
1,443,984 + CA264_06200 0.61 -1.1
1,443,984 + CA264_06200 0.61 -0.1
1,443,984 + CA264_06200 0.61 -0.0
1,443,984 + CA264_06200 0.61 -0.1
1,443,985 - CA264_06200 0.61 -2.0
1,443,985 - CA264_06200 0.61 +1.4
1,443,988 - CA264_06200 0.61 -0.1
1,444,184 + CA264_06200 0.88 +1.1
1,444,185 - CA264_06200 0.88 -1.5
1,444,185 - CA264_06200 0.88 -0.5
1,444,185 - CA264_06200 0.88 -0.7
1,444,185 - CA264_06200 0.88 -0.6
1,444,215 + -1.2
1,444,253 + +0.9
1,444,253 + -1.4
1,444,253 + -0.4
1,444,257 - -1.3
1,444,265 + -0.5
1,444,265 + -0.5
1,444,265 + -0.2
1,444,266 - +0.7
1,444,276 - +0.7
1,444,327 + -0.8
1,444,328 - -0.8
1,444,470 - CA264_06205 0.17 -1.3
1,444,528 - CA264_06205 0.21 +0.1
1,444,567 + CA264_06205 0.24 +0.2
1,444,583 - CA264_06205 0.26 -0.0
1,444,866 + CA264_06205 0.48 -2.8
1,445,060 + CA264_06205 0.64 -0.9
1,445,061 - CA264_06205 0.64 -0.1
1,445,061 - CA264_06205 0.64 +0.5
1,445,141 + CA264_06205 0.70 +0.5
1,445,250 + CA264_06205 0.79 +0.3

Or see this region's nucleotide sequence