Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05760

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05750 and CA264_05755 are separated by 88 nucleotidesCA264_05755 and CA264_05760 are separated by 7 nucleotidesCA264_05760 and CA264_05765 are separated by 76 nucleotides CA264_05750: CA264_05750 - universal stress protein, at 1,339,194 to 1,340,114 _05750 CA264_05755: CA264_05755 - hypothetical protein, at 1,340,203 to 1,340,919 _05755 CA264_05760: CA264_05760 - nitrogen fixation protein FixH, at 1,340,927 to 1,341,391 _05760 CA264_05765: CA264_05765 - cytochrome c oxidase accessory protein CcoG, at 1,341,468 to 1,342,880 _05765 Position (kb) 1340 1341 1342Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1339.941 kb on + strand, within CA264_05750at 1339.961 kb on + strand, within CA264_05750at 1339.963 kb on + strand, within CA264_05750at 1339.964 kb on - strandat 1340.039 kb on - strandat 1340.043 kb on + strandat 1340.058 kb on + strandat 1340.098 kb on + strandat 1340.099 kb on - strandat 1340.101 kb on - strandat 1340.115 kb on - strandat 1340.120 kb on + strandat 1340.121 kb on - strandat 1340.302 kb on - strand, within CA264_05755at 1340.329 kb on + strand, within CA264_05755at 1340.329 kb on + strand, within CA264_05755at 1340.329 kb on + strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.334 kb on - strand, within CA264_05755at 1340.334 kb on - strand, within CA264_05755at 1340.441 kb on + strand, within CA264_05755at 1340.442 kb on - strand, within CA264_05755at 1340.665 kb on + strand, within CA264_05755at 1340.666 kb on - strand, within CA264_05755at 1340.673 kb on + strand, within CA264_05755at 1340.763 kb on + strand, within CA264_05755at 1340.766 kb on - strand, within CA264_05755at 1340.766 kb on - strand, within CA264_05755at 1340.766 kb on - strand, within CA264_05755at 1340.790 kb on - strand, within CA264_05755at 1340.811 kb on - strand, within CA264_05755at 1340.811 kb on - strand, within CA264_05755at 1340.934 kb on - strandat 1341.152 kb on + strand, within CA264_05760at 1341.152 kb on + strand, within CA264_05760at 1341.152 kb on + strand, within CA264_05760at 1341.152 kb on + strand, within CA264_05760at 1341.153 kb on - strand, within CA264_05760at 1341.153 kb on - strand, within CA264_05760at 1341.153 kb on - strand, within CA264_05760at 1341.155 kb on + strand, within CA264_05760at 1341.155 kb on + strand, within CA264_05760at 1341.155 kb on + strand, within CA264_05760at 1341.178 kb on - strand, within CA264_05760at 1341.237 kb on + strand, within CA264_05760at 1341.255 kb on + strand, within CA264_05760at 1341.256 kb on - strand, within CA264_05760at 1341.256 kb on - strand, within CA264_05760at 1341.259 kb on - strand, within CA264_05760at 1341.313 kb on + strand, within CA264_05760at 1341.314 kb on - strand, within CA264_05760at 1341.394 kb on + strandat 1341.483 kb on + strandat 1341.523 kb on + strandat 1341.523 kb on + strandat 1341.529 kb on - strandat 1341.534 kb on + strandat 1341.576 kb on + strandat 1341.639 kb on + strand, within CA264_05765at 1341.720 kb on - strand, within CA264_05765at 1341.720 kb on - strand, within CA264_05765at 1341.724 kb on + strand, within CA264_05765at 1341.859 kb on + strand, within CA264_05765at 1341.906 kb on + strand, within CA264_05765at 1341.932 kb on + strand, within CA264_05765at 1342.001 kb on + strand, within CA264_05765at 1342.002 kb on - strand, within CA264_05765at 1342.002 kb on - strand, within CA264_05765at 1342.332 kb on + strand, within CA264_05765at 1342.333 kb on - strand, within CA264_05765at 1342.341 kb on - strand, within CA264_05765

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,339,941 + CA264_05750 0.81 -0.7
1,339,961 + CA264_05750 0.83 -0.2
1,339,963 + CA264_05750 0.83 +0.6
1,339,964 - +0.8
1,340,039 - -1.4
1,340,043 + +0.0
1,340,058 + +0.5
1,340,098 + +0.8
1,340,099 - -0.5
1,340,101 - -0.5
1,340,115 - -1.9
1,340,120 + +1.2
1,340,121 - +1.2
1,340,302 - CA264_05755 0.14 +1.5
1,340,329 + CA264_05755 0.18 +1.6
1,340,329 + CA264_05755 0.18 +1.1
1,340,329 + CA264_05755 0.18 +1.5
1,340,330 - CA264_05755 0.18 +1.8
1,340,330 - CA264_05755 0.18 +1.0
1,340,330 - CA264_05755 0.18 +3.4
1,340,330 - CA264_05755 0.18 +1.9
1,340,330 - CA264_05755 0.18 +1.1
1,340,330 - CA264_05755 0.18 +1.3
1,340,334 - CA264_05755 0.18 +0.6
1,340,334 - CA264_05755 0.18 +1.3
1,340,441 + CA264_05755 0.33 +0.7
1,340,442 - CA264_05755 0.33 +0.9
1,340,665 + CA264_05755 0.64 +1.6
1,340,666 - CA264_05755 0.65 +1.2
1,340,673 + CA264_05755 0.66 +1.1
1,340,763 + CA264_05755 0.78 +1.3
1,340,766 - CA264_05755 0.79 -0.9
1,340,766 - CA264_05755 0.79 -0.5
1,340,766 - CA264_05755 0.79 -1.8
1,340,790 - CA264_05755 0.82 +1.5
1,340,811 - CA264_05755 0.85 -0.7
1,340,811 - CA264_05755 0.85 +0.2
1,340,934 - +0.8
1,341,152 + CA264_05760 0.48 +1.0
1,341,152 + CA264_05760 0.48 +1.1
1,341,152 + CA264_05760 0.48 +0.6
1,341,152 + CA264_05760 0.48 +1.5
1,341,153 - CA264_05760 0.49 +2.4
1,341,153 - CA264_05760 0.49 +1.2
1,341,153 - CA264_05760 0.49 +2.1
1,341,155 + CA264_05760 0.49 +0.8
1,341,155 + CA264_05760 0.49 +1.5
1,341,155 + CA264_05760 0.49 +1.3
1,341,178 - CA264_05760 0.54 +0.9
1,341,237 + CA264_05760 0.67 +0.1
1,341,255 + CA264_05760 0.71 +0.8
1,341,256 - CA264_05760 0.71 +1.1
1,341,256 - CA264_05760 0.71 +1.3
1,341,259 - CA264_05760 0.71 +0.4
1,341,313 + CA264_05760 0.83 +1.0
1,341,314 - CA264_05760 0.83 +0.8
1,341,394 + +1.0
1,341,483 + +1.5
1,341,523 + -2.1
1,341,523 + +1.0
1,341,529 - +2.0
1,341,534 + +1.0
1,341,576 + +1.2
1,341,639 + CA264_05765 0.12 +0.9
1,341,720 - CA264_05765 0.18 +2.6
1,341,720 - CA264_05765 0.18 +2.1
1,341,724 + CA264_05765 0.18 +1.7
1,341,859 + CA264_05765 0.28 +1.4
1,341,906 + CA264_05765 0.31 +1.0
1,341,932 + CA264_05765 0.33 +1.1
1,342,001 + CA264_05765 0.38 -0.2
1,342,002 - CA264_05765 0.38 +1.8
1,342,002 - CA264_05765 0.38 +0.6
1,342,332 + CA264_05765 0.61 +2.6
1,342,333 - CA264_05765 0.61 +1.6
1,342,341 - CA264_05765 0.62 +1.8

Or see this region's nucleotide sequence