Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05735

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05725 and CA264_05730 are separated by 2 nucleotidesCA264_05730 and CA264_05735 are separated by 13 nucleotidesCA264_05735 and CA264_05740 are separated by 78 nucleotides CA264_05725: CA264_05725 - TonB-dependent receptor, at 1,331,899 to 1,334,253 _05725 CA264_05730: CA264_05730 - hypothetical protein, at 1,334,256 to 1,335,191 _05730 CA264_05735: CA264_05735 - ion transporter, at 1,335,205 to 1,336,032 _05735 CA264_05740: CA264_05740 - DUF389 domain-containing protein, at 1,336,111 to 1,337,511 _05740 Position (kb) 1335 1336 1337Strain fitness (log2 ratio) -2 -1 0 1at 1334.242 kb on - strandat 1334.242 kb on - strandat 1334.255 kb on + strandat 1334.256 kb on - strandat 1334.372 kb on + strand, within CA264_05730at 1334.373 kb on - strand, within CA264_05730at 1334.480 kb on - strand, within CA264_05730at 1334.480 kb on - strand, within CA264_05730at 1334.507 kb on + strand, within CA264_05730at 1334.549 kb on + strand, within CA264_05730at 1334.744 kb on - strand, within CA264_05730at 1334.838 kb on + strand, within CA264_05730at 1334.839 kb on - strand, within CA264_05730at 1334.989 kb on - strand, within CA264_05730at 1335.108 kb on - strandat 1335.113 kb on + strandat 1335.164 kb on + strandat 1335.244 kb on - strandat 1335.244 kb on - strandat 1335.251 kb on + strandat 1335.364 kb on + strand, within CA264_05735at 1335.364 kb on + strand, within CA264_05735at 1335.364 kb on + strand, within CA264_05735at 1335.364 kb on + strand, within CA264_05735at 1335.364 kb on + strand, within CA264_05735at 1335.365 kb on - strand, within CA264_05735at 1335.365 kb on - strand, within CA264_05735at 1335.365 kb on - strand, within CA264_05735at 1335.365 kb on - strand, within CA264_05735at 1335.365 kb on - strand, within CA264_05735at 1335.366 kb on + strand, within CA264_05735at 1335.367 kb on - strand, within CA264_05735at 1335.430 kb on + strand, within CA264_05735at 1335.431 kb on - strand, within CA264_05735at 1335.473 kb on + strand, within CA264_05735at 1335.525 kb on - strand, within CA264_05735at 1335.595 kb on - strand, within CA264_05735at 1335.595 kb on - strand, within CA264_05735at 1335.691 kb on + strand, within CA264_05735at 1335.699 kb on - strand, within CA264_05735at 1335.713 kb on - strand, within CA264_05735at 1335.780 kb on - strand, within CA264_05735at 1335.803 kb on + strand, within CA264_05735at 1335.818 kb on + strand, within CA264_05735at 1335.886 kb on + strand, within CA264_05735at 1335.887 kb on - strand, within CA264_05735at 1335.946 kb on + strand, within CA264_05735at 1335.946 kb on + strand, within CA264_05735at 1335.947 kb on - strand, within CA264_05735at 1335.947 kb on - strand, within CA264_05735at 1335.947 kb on - strand, within CA264_05735at 1335.990 kb on + strandat 1336.026 kb on + strandat 1336.043 kb on + strandat 1336.043 kb on + strandat 1336.067 kb on + strandat 1336.113 kb on - strandat 1336.126 kb on + strandat 1336.127 kb on - strandat 1336.339 kb on + strand, within CA264_05740at 1336.339 kb on + strand, within CA264_05740at 1336.506 kb on - strand, within CA264_05740at 1336.599 kb on - strand, within CA264_05740at 1336.599 kb on - strand, within CA264_05740at 1336.641 kb on - strand, within CA264_05740at 1336.643 kb on - strand, within CA264_05740at 1336.687 kb on + strand, within CA264_05740at 1336.723 kb on - strand, within CA264_05740at 1336.727 kb on - strand, within CA264_05740at 1336.727 kb on - strand, within CA264_05740at 1336.759 kb on + strand, within CA264_05740at 1336.760 kb on - strand, within CA264_05740at 1336.763 kb on + strand, within CA264_05740at 1336.763 kb on + strand, within CA264_05740at 1336.763 kb on + strand, within CA264_05740at 1336.772 kb on + strand, within CA264_05740at 1336.772 kb on + strand, within CA264_05740at 1336.773 kb on - strand, within CA264_05740at 1336.801 kb on + strand, within CA264_05740at 1336.808 kb on - strand, within CA264_05740at 1336.859 kb on + strand, within CA264_05740at 1336.899 kb on - strand, within CA264_05740at 1336.915 kb on - strand, within CA264_05740at 1336.973 kb on - strand, within CA264_05740at 1337.030 kb on - strand, within CA264_05740

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,334,242 - +0.2
1,334,242 - -0.6
1,334,255 + -1.0
1,334,256 - -0.6
1,334,372 + CA264_05730 0.12 -1.3
1,334,373 - CA264_05730 0.12 -0.8
1,334,480 - CA264_05730 0.24 +0.9
1,334,480 - CA264_05730 0.24 +0.9
1,334,507 + CA264_05730 0.27 -0.4
1,334,549 + CA264_05730 0.31 -2.3
1,334,744 - CA264_05730 0.52 +0.5
1,334,838 + CA264_05730 0.62 -1.0
1,334,839 - CA264_05730 0.62 +1.1
1,334,989 - CA264_05730 0.78 +0.7
1,335,108 - +0.7
1,335,113 + -0.9
1,335,164 + -0.9
1,335,244 - -0.1
1,335,244 - -0.4
1,335,251 + +0.4
1,335,364 + CA264_05735 0.19 +0.3
1,335,364 + CA264_05735 0.19 -1.0
1,335,364 + CA264_05735 0.19 -0.2
1,335,364 + CA264_05735 0.19 -0.5
1,335,364 + CA264_05735 0.19 +0.5
1,335,365 - CA264_05735 0.19 +0.3
1,335,365 - CA264_05735 0.19 -0.1
1,335,365 - CA264_05735 0.19 +0.8
1,335,365 - CA264_05735 0.19 -0.4
1,335,365 - CA264_05735 0.19 +0.4
1,335,366 + CA264_05735 0.19 +0.4
1,335,367 - CA264_05735 0.20 -0.0
1,335,430 + CA264_05735 0.27 -1.3
1,335,431 - CA264_05735 0.27 -0.5
1,335,473 + CA264_05735 0.32 -0.8
1,335,525 - CA264_05735 0.39 +0.6
1,335,595 - CA264_05735 0.47 +0.3
1,335,595 - CA264_05735 0.47 -0.2
1,335,691 + CA264_05735 0.59 +0.7
1,335,699 - CA264_05735 0.60 -0.2
1,335,713 - CA264_05735 0.61 +0.2
1,335,780 - CA264_05735 0.69 +0.9
1,335,803 + CA264_05735 0.72 -1.5
1,335,818 + CA264_05735 0.74 -0.3
1,335,886 + CA264_05735 0.82 -1.0
1,335,887 - CA264_05735 0.82 +0.0
1,335,946 + CA264_05735 0.89 +0.1
1,335,946 + CA264_05735 0.89 -1.2
1,335,947 - CA264_05735 0.90 -0.9
1,335,947 - CA264_05735 0.90 -0.7
1,335,947 - CA264_05735 0.90 +0.6
1,335,990 + -0.8
1,336,026 + -1.3
1,336,043 + -0.5
1,336,043 + +0.7
1,336,067 + +0.3
1,336,113 - -0.5
1,336,126 + +0.3
1,336,127 - +0.3
1,336,339 + CA264_05740 0.16 +1.0
1,336,339 + CA264_05740 0.16 -0.0
1,336,506 - CA264_05740 0.28 +1.2
1,336,599 - CA264_05740 0.35 +0.5
1,336,599 - CA264_05740 0.35 -0.7
1,336,641 - CA264_05740 0.38 -0.5
1,336,643 - CA264_05740 0.38 +0.0
1,336,687 + CA264_05740 0.41 -0.1
1,336,723 - CA264_05740 0.44 +0.6
1,336,727 - CA264_05740 0.44 -0.3
1,336,727 - CA264_05740 0.44 +0.8
1,336,759 + CA264_05740 0.46 +1.0
1,336,760 - CA264_05740 0.46 +0.5
1,336,763 + CA264_05740 0.47 -0.4
1,336,763 + CA264_05740 0.47 -0.7
1,336,763 + CA264_05740 0.47 +0.2
1,336,772 + CA264_05740 0.47 +0.2
1,336,772 + CA264_05740 0.47 +0.2
1,336,773 - CA264_05740 0.47 -0.3
1,336,801 + CA264_05740 0.49 -0.7
1,336,808 - CA264_05740 0.50 -0.3
1,336,859 + CA264_05740 0.53 +1.1
1,336,899 - CA264_05740 0.56 +0.3
1,336,915 - CA264_05740 0.57 +0.3
1,336,973 - CA264_05740 0.62 +1.0
1,337,030 - CA264_05740 0.66 +0.3

Or see this region's nucleotide sequence