Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05475

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05465 and CA264_05470 are separated by 45 nucleotidesCA264_05470 and CA264_05475 are separated by 43 nucleotidesCA264_05475 and CA264_05480 are separated by 84 nucleotides CA264_05465: CA264_05465 - thymidylate synthase, at 1,270,188 to 1,270,982 _05465 CA264_05470: CA264_05470 - hypothetical protein, at 1,271,028 to 1,271,486 _05470 CA264_05475: CA264_05475 - MBL fold metallo-hydrolase, at 1,271,530 to 1,272,294 _05475 CA264_05480: CA264_05480 - 3-ketoacyl-ACP reductase, at 1,272,379 to 1,273,098 _05480 Position (kb) 1271 1272 1273Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1270.980 kb on + strandat 1270.981 kb on - strandat 1270.981 kb on - strandat 1270.981 kb on - strandat 1270.981 kb on - strandat 1271.004 kb on + strandat 1271.005 kb on - strandat 1271.148 kb on - strand, within CA264_05470at 1271.191 kb on - strand, within CA264_05470at 1271.232 kb on + strand, within CA264_05470at 1271.402 kb on + strand, within CA264_05470at 1271.402 kb on + strand, within CA264_05470at 1271.402 kb on + strand, within CA264_05470at 1271.402 kb on + strand, within CA264_05470at 1271.403 kb on - strand, within CA264_05470at 1271.403 kb on - strand, within CA264_05470at 1271.418 kb on + strand, within CA264_05470at 1271.442 kb on - strandat 1271.472 kb on + strandat 1271.472 kb on + strandat 1271.484 kb on + strandat 1271.498 kb on - strandat 1271.529 kb on + strandat 1271.610 kb on + strand, within CA264_05475at 1271.677 kb on + strand, within CA264_05475at 1271.678 kb on - strand, within CA264_05475at 1271.678 kb on - strand, within CA264_05475at 1271.691 kb on + strand, within CA264_05475at 1271.692 kb on - strand, within CA264_05475at 1271.695 kb on + strand, within CA264_05475at 1271.695 kb on + strand, within CA264_05475at 1271.695 kb on + strandat 1271.869 kb on + strand, within CA264_05475at 1271.870 kb on - strand, within CA264_05475at 1271.947 kb on + strand, within CA264_05475at 1271.947 kb on + strand, within CA264_05475at 1271.948 kb on - strand, within CA264_05475at 1271.948 kb on - strand, within CA264_05475at 1271.949 kb on + strand, within CA264_05475at 1272.181 kb on + strand, within CA264_05475at 1272.226 kb on - strandat 1272.374 kb on + strandat 1272.376 kb on + strandat 1272.391 kb on - strandat 1272.632 kb on + strand, within CA264_05480at 1272.669 kb on + strand, within CA264_05480at 1272.670 kb on - strand, within CA264_05480at 1272.733 kb on + strand, within CA264_05480at 1272.737 kb on + strand, within CA264_05480at 1272.737 kb on + strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.738 kb on - strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.740 kb on + strand, within CA264_05480at 1272.831 kb on + strand, within CA264_05480at 1272.898 kb on - strand, within CA264_05480at 1272.916 kb on + strand, within CA264_05480at 1272.940 kb on - strand, within CA264_05480at 1272.940 kb on - strand, within CA264_05480at 1272.946 kb on + strand, within CA264_05480at 1272.958 kb on + strand, within CA264_05480at 1272.998 kb on - strand, within CA264_05480at 1273.095 kb on + strandat 1273.286 kb on - strandat 1273.287 kb on + strandat 1273.289 kb on + strandat 1273.289 kb on + strandat 1273.290 kb on - strandat 1273.290 kb on - strandat 1273.290 kb on - strandat 1273.292 kb on + strandat 1273.293 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,270,980 + -1.1
1,270,981 - +2.6
1,270,981 - +1.3
1,270,981 - +0.6
1,270,981 - -0.7
1,271,004 + -1.8
1,271,005 - -0.1
1,271,148 - CA264_05470 0.26 +0.1
1,271,191 - CA264_05470 0.36 +0.1
1,271,232 + CA264_05470 0.44 -2.0
1,271,402 + CA264_05470 0.81 -0.1
1,271,402 + CA264_05470 0.81 -0.0
1,271,402 + CA264_05470 0.81 -2.4
1,271,402 + CA264_05470 0.81 -0.8
1,271,403 - CA264_05470 0.82 +1.0
1,271,403 - CA264_05470 0.82 +1.1
1,271,418 + CA264_05470 0.85 -2.2
1,271,442 - +0.5
1,271,472 + +0.5
1,271,472 + -1.6
1,271,484 + -1.8
1,271,498 - +0.0
1,271,529 + +0.8
1,271,610 + CA264_05475 0.10 -2.9
1,271,677 + CA264_05475 0.19 -1.9
1,271,678 - CA264_05475 0.19 +0.1
1,271,678 - CA264_05475 0.19 -0.2
1,271,691 + CA264_05475 0.21 -1.5
1,271,692 - CA264_05475 0.21 +0.8
1,271,695 + CA264_05475 0.22 +0.5
1,271,695 + CA264_05475 0.22 -1.8
1,271,695 + +1.8
1,271,869 + CA264_05475 0.44 -0.6
1,271,870 - CA264_05475 0.44 +0.0
1,271,947 + CA264_05475 0.55 +1.2
1,271,947 + CA264_05475 0.55 -2.5
1,271,948 - CA264_05475 0.55 -0.1
1,271,948 - CA264_05475 0.55 +0.3
1,271,949 + CA264_05475 0.55 +0.5
1,272,181 + CA264_05475 0.85 -0.4
1,272,226 - -1.0
1,272,374 + -0.1
1,272,376 + +1.6
1,272,391 - -2.5
1,272,632 + CA264_05480 0.35 -0.7
1,272,669 + CA264_05480 0.40 -0.3
1,272,670 - CA264_05480 0.40 -1.6
1,272,733 + CA264_05480 0.49 +0.6
1,272,737 + CA264_05480 0.50 -3.7
1,272,737 + CA264_05480 0.50 -2.5
1,272,738 - CA264_05480 0.50 -0.2
1,272,738 - CA264_05480 0.50 -1.0
1,272,738 - CA264_05480 0.50 -0.6
1,272,738 - CA264_05480 0.50 -1.3
1,272,740 + CA264_05480 0.50 -1.5
1,272,740 + CA264_05480 0.50 -0.3
1,272,740 + CA264_05480 0.50 -1.1
1,272,740 + CA264_05480 0.50 -0.2
1,272,831 + CA264_05480 0.63 -0.8
1,272,898 - CA264_05480 0.72 +0.2
1,272,916 + CA264_05480 0.75 -0.4
1,272,940 - CA264_05480 0.78 -1.9
1,272,940 - CA264_05480 0.78 -0.1
1,272,946 + CA264_05480 0.79 -0.7
1,272,958 + CA264_05480 0.80 -0.1
1,272,998 - CA264_05480 0.86 -1.3
1,273,095 + +2.1
1,273,286 - +3.3
1,273,287 + -2.7
1,273,289 + -2.2
1,273,289 + -1.2
1,273,290 - -0.5
1,273,290 - -1.7
1,273,290 - -0.1
1,273,292 + -2.2
1,273,293 - -2.7

Or see this region's nucleotide sequence