Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04830

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04825 and CA264_04830 are separated by 470 nucleotidesCA264_04830 and CA264_04835 are separated by 361 nucleotides CA264_04825: CA264_04825 - catalase HPII, at 1,116,586 to 1,118,796 _04825 CA264_04830: CA264_04830 - hypothetical protein, at 1,119,267 to 1,119,818 _04830 CA264_04835: CA264_04835 - ABC transporter ATP-binding protein, at 1,120,180 to 1,122,105 _04835 Position (kb) 1119 1120Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1118.293 kb on + strand, within CA264_04825at 1118.295 kb on + strand, within CA264_04825at 1118.330 kb on + strand, within CA264_04825at 1118.330 kb on + strand, within CA264_04825at 1118.385 kb on + strand, within CA264_04825at 1118.386 kb on - strand, within CA264_04825at 1118.407 kb on + strand, within CA264_04825at 1118.408 kb on - strand, within CA264_04825at 1118.442 kb on + strand, within CA264_04825at 1118.443 kb on - strand, within CA264_04825at 1118.443 kb on - strand, within CA264_04825at 1118.466 kb on + strand, within CA264_04825at 1118.467 kb on - strand, within CA264_04825at 1118.477 kb on + strand, within CA264_04825at 1118.478 kb on - strand, within CA264_04825at 1118.488 kb on - strand, within CA264_04825at 1118.488 kb on - strand, within CA264_04825at 1118.488 kb on - strand, within CA264_04825at 1118.498 kb on + strand, within CA264_04825at 1118.498 kb on + strand, within CA264_04825at 1118.498 kb on + strand, within CA264_04825at 1118.498 kb on + strand, within CA264_04825at 1118.542 kb on + strand, within CA264_04825at 1118.684 kb on + strandat 1118.829 kb on + strandat 1118.829 kb on + strandat 1118.830 kb on - strandat 1118.861 kb on - strandat 1118.861 kb on - strandat 1118.944 kb on - strandat 1118.988 kb on + strandat 1118.988 kb on + strandat 1119.161 kb on - strandat 1119.171 kb on - strandat 1119.268 kb on + strandat 1119.360 kb on + strand, within CA264_04830at 1119.361 kb on - strand, within CA264_04830at 1119.371 kb on + strand, within CA264_04830at 1119.371 kb on + strand, within CA264_04830at 1119.372 kb on - strand, within CA264_04830at 1119.380 kb on - strand, within CA264_04830at 1119.444 kb on - strandat 1119.444 kb on - strand, within CA264_04830at 1119.472 kb on + strand, within CA264_04830at 1119.473 kb on - strand, within CA264_04830at 1119.475 kb on + strand, within CA264_04830at 1119.475 kb on + strand, within CA264_04830at 1119.476 kb on - strand, within CA264_04830at 1119.565 kb on + strand, within CA264_04830at 1119.565 kb on + strand, within CA264_04830at 1119.652 kb on + strand, within CA264_04830at 1119.661 kb on - strand, within CA264_04830at 1119.795 kb on + strandat 1119.818 kb on + strandat 1119.818 kb on + strandat 1119.819 kb on - strandat 1119.819 kb on - strandat 1119.820 kb on + strandat 1119.823 kb on + strandat 1119.824 kb on - strandat 1119.836 kb on - strandat 1119.853 kb on + strandat 1119.858 kb on - strandat 1119.874 kb on + strandat 1119.874 kb on + strandat 1119.879 kb on + strandat 1119.908 kb on + strandat 1119.954 kb on - strandat 1119.954 kb on - strandat 1120.005 kb on + strandat 1120.005 kb on + strandat 1120.005 kb on + strandat 1120.006 kb on - strandat 1120.006 kb on - strandat 1120.121 kb on + strandat 1120.167 kb on + strandat 1120.191 kb on + strandat 1120.228 kb on + strandat 1120.229 kb on - strandat 1120.249 kb on - strandat 1120.249 kb on - strandat 1120.250 kb on + strandat 1120.251 kb on - strandat 1120.263 kb on + strandat 1120.264 kb on - strandat 1120.296 kb on + strandat 1120.297 kb on - strandat 1120.406 kb on - strand, within CA264_04835at 1120.478 kb on + strand, within CA264_04835at 1120.487 kb on + strand, within CA264_04835at 1120.506 kb on + strand, within CA264_04835at 1120.526 kb on + strand, within CA264_04835at 1120.527 kb on - strand, within CA264_04835at 1120.575 kb on + strand, within CA264_04835at 1120.761 kb on + strand, within CA264_04835at 1120.777 kb on + strand, within CA264_04835at 1120.777 kb on + strand, within CA264_04835at 1120.781 kb on + strand, within CA264_04835at 1120.781 kb on + strand, within CA264_04835at 1120.782 kb on - strand, within CA264_04835at 1120.782 kb on - strand, within CA264_04835at 1120.782 kb on - strand, within CA264_04835at 1120.812 kb on - strand, within CA264_04835

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,118,293 + CA264_04825 0.77 -0.1
1,118,295 + CA264_04825 0.77 +0.3
1,118,330 + CA264_04825 0.79 -0.9
1,118,330 + CA264_04825 0.79 -0.9
1,118,385 + CA264_04825 0.81 +0.1
1,118,386 - CA264_04825 0.81 +0.8
1,118,407 + CA264_04825 0.82 -1.0
1,118,408 - CA264_04825 0.82 -0.6
1,118,442 + CA264_04825 0.84 -0.9
1,118,443 - CA264_04825 0.84 +1.6
1,118,443 - CA264_04825 0.84 -0.4
1,118,466 + CA264_04825 0.85 -0.1
1,118,467 - CA264_04825 0.85 -0.8
1,118,477 + CA264_04825 0.86 +0.6
1,118,478 - CA264_04825 0.86 -0.4
1,118,488 - CA264_04825 0.86 -0.4
1,118,488 - CA264_04825 0.86 -0.1
1,118,488 - CA264_04825 0.86 +0.4
1,118,498 + CA264_04825 0.86 -0.4
1,118,498 + CA264_04825 0.86 -0.9
1,118,498 + CA264_04825 0.86 -1.9
1,118,498 + CA264_04825 0.86 -1.4
1,118,542 + CA264_04825 0.88 -0.3
1,118,684 + +0.7
1,118,829 + +0.8
1,118,829 + -0.5
1,118,830 - +0.2
1,118,861 - +0.6
1,118,861 - -1.4
1,118,944 - +1.1
1,118,988 + +0.1
1,118,988 + -2.1
1,119,161 - +1.4
1,119,171 - +0.1
1,119,268 + +0.3
1,119,360 + CA264_04830 0.17 -1.9
1,119,361 - CA264_04830 0.17 -1.1
1,119,371 + CA264_04830 0.19 -1.2
1,119,371 + CA264_04830 0.19 +0.3
1,119,372 - CA264_04830 0.19 +0.1
1,119,380 - CA264_04830 0.20 -1.1
1,119,444 - +1.3
1,119,444 - CA264_04830 0.32 -0.0
1,119,472 + CA264_04830 0.37 +0.3
1,119,473 - CA264_04830 0.37 -0.0
1,119,475 + CA264_04830 0.38 -0.8
1,119,475 + CA264_04830 0.38 -1.2
1,119,476 - CA264_04830 0.38 -1.4
1,119,565 + CA264_04830 0.54 +1.6
1,119,565 + CA264_04830 0.54 -1.3
1,119,652 + CA264_04830 0.70 +0.6
1,119,661 - CA264_04830 0.71 -1.1
1,119,795 + -1.0
1,119,818 + +0.6
1,119,818 + -0.5
1,119,819 - +0.7
1,119,819 - +0.5
1,119,820 + +1.3
1,119,823 + +0.8
1,119,824 - +0.8
1,119,836 - +0.6
1,119,853 + -0.2
1,119,858 - +2.9
1,119,874 + +1.5
1,119,874 + -1.3
1,119,879 + -1.8
1,119,908 + -1.3
1,119,954 - +0.2
1,119,954 - +0.5
1,120,005 + -0.5
1,120,005 + -1.0
1,120,005 + -1.3
1,120,006 - -1.7
1,120,006 - +0.7
1,120,121 + +0.5
1,120,167 + +0.8
1,120,191 + +0.7
1,120,228 + +0.6
1,120,229 - +0.7
1,120,249 - -1.2
1,120,249 - +1.1
1,120,250 + +1.1
1,120,251 - +2.2
1,120,263 + -0.2
1,120,264 - +1.6
1,120,296 + +1.4
1,120,297 - +0.6
1,120,406 - CA264_04835 0.12 +1.4
1,120,478 + CA264_04835 0.15 -0.1
1,120,487 + CA264_04835 0.16 +0.3
1,120,506 + CA264_04835 0.17 -0.4
1,120,526 + CA264_04835 0.18 -0.1
1,120,527 - CA264_04835 0.18 +0.2
1,120,575 + CA264_04835 0.21 -0.8
1,120,761 + CA264_04835 0.30 +1.1
1,120,777 + CA264_04835 0.31 -0.9
1,120,777 + CA264_04835 0.31 +0.4
1,120,781 + CA264_04835 0.31 -0.3
1,120,781 + CA264_04835 0.31 +0.8
1,120,782 - CA264_04835 0.31 -1.7
1,120,782 - CA264_04835 0.31 +1.0
1,120,782 - CA264_04835 0.31 +0.6
1,120,812 - CA264_04835 0.33 +1.5

Or see this region's nucleotide sequence