Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04620

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04615 and CA264_04620 are separated by 167 nucleotidesCA264_04620 and CA264_04625 are separated by 16 nucleotidesCA264_04625 and CA264_04630 are separated by 241 nucleotides CA264_04615: CA264_04615 - hydrolase, at 1,067,535 to 1,069,085 _04615 CA264_04620: CA264_04620 - succinyl-CoA--3-ketoacid-CoA transferase, at 1,069,253 to 1,069,909 _04620 CA264_04625: CA264_04625 - succinyl-CoA--3-ketoacid-CoA transferase, at 1,069,926 to 1,070,624 _04625 CA264_04630: CA264_04630 - TIGR00341 family protein, at 1,070,866 to 1,072,743 _04630 Position (kb) 1069 1070Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1068.308 kb on - strand, within CA264_04615at 1068.308 kb on - strand, within CA264_04615at 1068.347 kb on + strand, within CA264_04615at 1068.348 kb on - strand, within CA264_04615at 1068.348 kb on - strand, within CA264_04615at 1068.450 kb on + strand, within CA264_04615at 1068.546 kb on + strand, within CA264_04615at 1068.623 kb on + strand, within CA264_04615at 1068.623 kb on + strand, within CA264_04615at 1068.710 kb on - strand, within CA264_04615at 1068.769 kb on + strand, within CA264_04615at 1068.819 kb on - strand, within CA264_04615at 1068.829 kb on + strand, within CA264_04615at 1068.829 kb on + strand, within CA264_04615at 1068.829 kb on + strand, within CA264_04615at 1068.829 kb on + strand, within CA264_04615at 1068.830 kb on - strand, within CA264_04615at 1068.830 kb on - strandat 1068.834 kb on - strand, within CA264_04615at 1068.908 kb on + strand, within CA264_04615at 1069.053 kb on - strandat 1069.053 kb on - strandat 1069.064 kb on + strandat 1069.065 kb on - strandat 1069.086 kb on + strandat 1069.090 kb on + strandat 1069.090 kb on + strandat 1069.113 kb on + strandat 1069.114 kb on - strandat 1069.123 kb on - strandat 1069.135 kb on + strandat 1069.137 kb on + strandat 1069.138 kb on - strandat 1069.147 kb on - strandat 1069.149 kb on - strandat 1069.152 kb on - strandat 1069.153 kb on + strandat 1069.249 kb on + strandat 1069.272 kb on - strandat 1069.313 kb on + strandat 1069.314 kb on - strandat 1069.355 kb on - strand, within CA264_04620at 1069.430 kb on + strand, within CA264_04620at 1069.496 kb on - strand, within CA264_04620at 1069.542 kb on - strand, within CA264_04620at 1069.556 kb on + strand, within CA264_04620at 1069.667 kb on - strand, within CA264_04620at 1069.667 kb on - strand, within CA264_04620at 1069.806 kb on + strand, within CA264_04620at 1069.806 kb on + strand, within CA264_04620at 1069.848 kb on + strandat 1069.848 kb on + strandat 1069.848 kb on + strandat 1069.848 kb on + strandat 1069.849 kb on - strandat 1069.849 kb on - strandat 1069.862 kb on + strandat 1069.901 kb on + strandat 1069.901 kb on + strandat 1069.996 kb on + strand, within CA264_04625at 1070.056 kb on - strand, within CA264_04625at 1070.201 kb on - strand, within CA264_04625at 1070.280 kb on + strand, within CA264_04625at 1070.283 kb on - strand, within CA264_04625at 1070.338 kb on - strand, within CA264_04625at 1070.392 kb on + strand, within CA264_04625at 1070.392 kb on + strand, within CA264_04625at 1070.392 kb on + strandat 1070.392 kb on + strand, within CA264_04625at 1070.393 kb on - strand, within CA264_04625at 1070.433 kb on + strand, within CA264_04625at 1070.465 kb on + strand, within CA264_04625at 1070.481 kb on - strand, within CA264_04625at 1070.481 kb on - strand, within CA264_04625at 1070.616 kb on - strandat 1070.624 kb on + strandat 1070.625 kb on - strandat 1070.646 kb on + strandat 1070.649 kb on - strandat 1070.649 kb on - strandat 1070.649 kb on - strandat 1070.690 kb on + strandat 1070.698 kb on + strandat 1070.699 kb on - strandat 1070.699 kb on - strandat 1070.707 kb on + strandat 1070.727 kb on + strandat 1070.793 kb on + strandat 1070.830 kb on + strandat 1070.831 kb on - strandat 1070.883 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,068,308 - CA264_04615 0.50 +1.0
1,068,308 - CA264_04615 0.50 +0.5
1,068,347 + CA264_04615 0.52 -0.5
1,068,348 - CA264_04615 0.52 -0.2
1,068,348 - CA264_04615 0.52 +0.3
1,068,450 + CA264_04615 0.59 +0.9
1,068,546 + CA264_04615 0.65 -1.1
1,068,623 + CA264_04615 0.70 -0.8
1,068,623 + CA264_04615 0.70 -2.4
1,068,710 - CA264_04615 0.76 -3.0
1,068,769 + CA264_04615 0.80 -0.1
1,068,819 - CA264_04615 0.83 -1.9
1,068,829 + CA264_04615 0.83 -0.6
1,068,829 + CA264_04615 0.83 -1.1
1,068,829 + CA264_04615 0.83 -1.2
1,068,829 + CA264_04615 0.83 -2.8
1,068,830 - CA264_04615 0.83 -1.5
1,068,830 - +1.9
1,068,834 - CA264_04615 0.84 -2.5
1,068,908 + CA264_04615 0.89 +1.9
1,069,053 - -2.3
1,069,053 - -1.8
1,069,064 + -1.5
1,069,065 - -0.4
1,069,086 + +0.8
1,069,090 + +0.9
1,069,090 + +0.9
1,069,113 + -0.6
1,069,114 - -0.5
1,069,123 - -2.4
1,069,135 + +0.3
1,069,137 + +0.6
1,069,138 - -0.6
1,069,147 - -0.0
1,069,149 - -0.8
1,069,152 - -0.4
1,069,153 + +1.2
1,069,249 + +2.4
1,069,272 - -1.2
1,069,313 + +1.8
1,069,314 - -1.5
1,069,355 - CA264_04620 0.16 -2.4
1,069,430 + CA264_04620 0.27 +0.8
1,069,496 - CA264_04620 0.37 +0.6
1,069,542 - CA264_04620 0.44 -1.1
1,069,556 + CA264_04620 0.46 +1.9
1,069,667 - CA264_04620 0.63 -0.6
1,069,667 - CA264_04620 0.63 -1.0
1,069,806 + CA264_04620 0.84 +0.9
1,069,806 + CA264_04620 0.84 +0.9
1,069,848 + -1.9
1,069,848 + +0.5
1,069,848 + -0.1
1,069,848 + +0.3
1,069,849 - -0.1
1,069,849 - +0.6
1,069,862 + +0.9
1,069,901 + +0.6
1,069,901 + -0.2
1,069,996 + CA264_04625 0.10 +1.2
1,070,056 - CA264_04625 0.19 +0.8
1,070,201 - CA264_04625 0.39 -0.4
1,070,280 + CA264_04625 0.51 -2.3
1,070,283 - CA264_04625 0.51 -0.2
1,070,338 - CA264_04625 0.59 +1.2
1,070,392 + CA264_04625 0.67 +0.8
1,070,392 + CA264_04625 0.67 -0.8
1,070,392 + +0.9
1,070,392 + CA264_04625 0.67 +0.2
1,070,393 - CA264_04625 0.67 -0.5
1,070,433 + CA264_04625 0.73 +0.4
1,070,465 + CA264_04625 0.77 +0.3
1,070,481 - CA264_04625 0.79 +1.8
1,070,481 - CA264_04625 0.79 +0.1
1,070,616 - -0.5
1,070,624 + +0.6
1,070,625 - -0.4
1,070,646 + +0.4
1,070,649 - -0.6
1,070,649 - -2.1
1,070,649 - -0.2
1,070,690 + -0.5
1,070,698 + -0.3
1,070,699 - -1.5
1,070,699 - +0.5
1,070,707 + -0.8
1,070,727 + -0.1
1,070,793 + +0.7
1,070,830 + +0.6
1,070,831 - -0.6
1,070,883 + +2.7

Or see this region's nucleotide sequence