Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04415

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04410 and CA264_04415 are separated by 258 nucleotidesCA264_04415 and CA264_04420 are separated by 109 nucleotides CA264_04410: CA264_04410 - hypothetical protein, at 1,019,744 to 1,020,802 _04410 CA264_04415: CA264_04415 - hypothetical protein, at 1,021,061 to 1,021,351 _04415 CA264_04420: CA264_04420 - Xaa-Pro aminopeptidase, at 1,021,461 to 1,022,819 _04420 Position (kb) 1021 1022Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1020.129 kb on + strand, within CA264_04410at 1020.129 kb on + strand, within CA264_04410at 1020.130 kb on - strand, within CA264_04410at 1020.137 kb on + strand, within CA264_04410at 1020.137 kb on + strand, within CA264_04410at 1020.137 kb on + strand, within CA264_04410at 1020.139 kb on + strand, within CA264_04410at 1020.140 kb on - strand, within CA264_04410at 1020.145 kb on + strand, within CA264_04410at 1020.145 kb on + strand, within CA264_04410at 1020.171 kb on - strand, within CA264_04410at 1020.189 kb on + strand, within CA264_04410at 1020.204 kb on + strand, within CA264_04410at 1020.205 kb on - strand, within CA264_04410at 1020.243 kb on - strand, within CA264_04410at 1020.244 kb on + strand, within CA264_04410at 1020.244 kb on + strand, within CA264_04410at 1020.350 kb on + strand, within CA264_04410at 1020.350 kb on + strand, within CA264_04410at 1020.350 kb on + strand, within CA264_04410at 1020.351 kb on - strand, within CA264_04410at 1020.352 kb on + strand, within CA264_04410at 1020.353 kb on - strand, within CA264_04410at 1020.353 kb on - strand, within CA264_04410at 1020.363 kb on + strand, within CA264_04410at 1020.364 kb on - strand, within CA264_04410at 1020.407 kb on + strand, within CA264_04410at 1020.560 kb on + strand, within CA264_04410at 1020.576 kb on + strand, within CA264_04410at 1020.576 kb on + strand, within CA264_04410at 1020.577 kb on - strand, within CA264_04410at 1020.767 kb on - strandat 1020.830 kb on + strandat 1020.832 kb on + strandat 1020.833 kb on - strandat 1020.837 kb on - strandat 1020.837 kb on - strandat 1020.855 kb on - strandat 1020.890 kb on - strandat 1020.890 kb on - strandat 1020.961 kb on + strandat 1021.011 kb on + strandat 1021.011 kb on + strandat 1021.012 kb on - strandat 1021.029 kb on - strandat 1021.034 kb on + strandat 1021.035 kb on - strandat 1021.041 kb on - strandat 1021.065 kb on + strandat 1021.072 kb on + strandat 1021.073 kb on - strandat 1021.076 kb on + strandat 1021.076 kb on + strandat 1021.076 kb on + strandat 1021.077 kb on - strandat 1021.077 kb on - strandat 1021.078 kb on + strandat 1021.078 kb on + strandat 1021.078 kb on + strandat 1021.078 kb on + strandat 1021.079 kb on - strandat 1021.079 kb on - strandat 1021.079 kb on - strandat 1021.079 kb on - strandat 1021.079 kb on - strandat 1021.207 kb on + strand, within CA264_04415at 1021.218 kb on + strand, within CA264_04415at 1021.337 kb on - strandat 1021.363 kb on + strandat 1021.462 kb on + strandat 1021.463 kb on - strandat 1021.492 kb on - strandat 1021.606 kb on - strand, within CA264_04420at 1021.630 kb on + strand, within CA264_04420at 1021.654 kb on + strand, within CA264_04420at 1021.698 kb on + strand, within CA264_04420at 1021.733 kb on + strand, within CA264_04420at 1021.744 kb on + strand, within CA264_04420at 1021.882 kb on + strand, within CA264_04420at 1021.882 kb on + strand, within CA264_04420at 1021.883 kb on - strand, within CA264_04420at 1021.885 kb on - strand, within CA264_04420at 1021.918 kb on + strand, within CA264_04420at 1021.918 kb on + strand, within CA264_04420at 1021.918 kb on + strand, within CA264_04420at 1021.918 kb on + strand, within CA264_04420at 1021.940 kb on + strand, within CA264_04420at 1021.940 kb on + strand, within CA264_04420at 1021.940 kb on + strand, within CA264_04420at 1021.941 kb on - strand, within CA264_04420at 1021.941 kb on - strand, within CA264_04420at 1021.955 kb on - strand, within CA264_04420at 1022.163 kb on + strand, within CA264_04420at 1022.224 kb on + strand, within CA264_04420at 1022.224 kb on + strand, within CA264_04420at 1022.225 kb on - strand, within CA264_04420at 1022.317 kb on + strand, within CA264_04420at 1022.318 kb on - strand, within CA264_04420

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,020,129 + CA264_04410 0.36 -1.5
1,020,129 + CA264_04410 0.36 +0.3
1,020,130 - CA264_04410 0.36 +2.4
1,020,137 + CA264_04410 0.37 +1.9
1,020,137 + CA264_04410 0.37 +0.5
1,020,137 + CA264_04410 0.37 +0.3
1,020,139 + CA264_04410 0.37 -0.1
1,020,140 - CA264_04410 0.37 +0.1
1,020,145 + CA264_04410 0.38 +1.1
1,020,145 + CA264_04410 0.38 -0.5
1,020,171 - CA264_04410 0.40 +0.3
1,020,189 + CA264_04410 0.42 +0.1
1,020,204 + CA264_04410 0.43 -1.4
1,020,205 - CA264_04410 0.44 +1.4
1,020,243 - CA264_04410 0.47 -0.1
1,020,244 + CA264_04410 0.47 -0.1
1,020,244 + CA264_04410 0.47 +0.9
1,020,350 + CA264_04410 0.57 -0.8
1,020,350 + CA264_04410 0.57 -1.2
1,020,350 + CA264_04410 0.57 -0.3
1,020,351 - CA264_04410 0.57 -0.3
1,020,352 + CA264_04410 0.57 +0.4
1,020,353 - CA264_04410 0.58 +0.1
1,020,353 - CA264_04410 0.58 +0.4
1,020,363 + CA264_04410 0.58 -0.8
1,020,364 - CA264_04410 0.59 -0.4
1,020,407 + CA264_04410 0.63 -0.5
1,020,560 + CA264_04410 0.77 -0.5
1,020,576 + CA264_04410 0.79 -3.3
1,020,576 + CA264_04410 0.79 +1.5
1,020,577 - CA264_04410 0.79 +0.1
1,020,767 - +1.2
1,020,830 + -3.2
1,020,832 + -1.5
1,020,833 - -0.8
1,020,837 - +0.1
1,020,837 - -4.0
1,020,855 - -3.5
1,020,890 - -0.2
1,020,890 - -1.8
1,020,961 + -0.3
1,021,011 + -1.1
1,021,011 + -1.8
1,021,012 - -2.5
1,021,029 - -1.3
1,021,034 + +1.5
1,021,035 - -0.4
1,021,041 - -2.1
1,021,065 + -2.4
1,021,072 + -2.0
1,021,073 - +0.8
1,021,076 + -1.9
1,021,076 + -0.6
1,021,076 + -2.4
1,021,077 - -2.7
1,021,077 - -0.2
1,021,078 + -0.4
1,021,078 + -3.2
1,021,078 + -1.7
1,021,078 + +0.0
1,021,079 - -1.9
1,021,079 - -1.8
1,021,079 - -1.2
1,021,079 - -0.3
1,021,079 - -2.8
1,021,207 + CA264_04415 0.50 -2.1
1,021,218 + CA264_04415 0.54 -1.6
1,021,337 - -1.9
1,021,363 + -1.8
1,021,462 + -0.1
1,021,463 - -1.8
1,021,492 - -3.2
1,021,606 - CA264_04420 0.11 -2.2
1,021,630 + CA264_04420 0.12 -2.2
1,021,654 + CA264_04420 0.14 -1.9
1,021,698 + CA264_04420 0.17 -1.0
1,021,733 + CA264_04420 0.20 -0.9
1,021,744 + CA264_04420 0.21 -1.0
1,021,882 + CA264_04420 0.31 +0.4
1,021,882 + CA264_04420 0.31 -0.2
1,021,883 - CA264_04420 0.31 -3.9
1,021,885 - CA264_04420 0.31 -1.7
1,021,918 + CA264_04420 0.34 -0.1
1,021,918 + CA264_04420 0.34 -0.6
1,021,918 + CA264_04420 0.34 +2.0
1,021,918 + CA264_04420 0.34 -1.1
1,021,940 + CA264_04420 0.35 -2.0
1,021,940 + CA264_04420 0.35 -0.6
1,021,940 + CA264_04420 0.35 -0.4
1,021,941 - CA264_04420 0.35 -3.6
1,021,941 - CA264_04420 0.35 -1.4
1,021,955 - CA264_04420 0.36 -1.9
1,022,163 + CA264_04420 0.52 -0.6
1,022,224 + CA264_04420 0.56 -0.6
1,022,224 + CA264_04420 0.56 -2.2
1,022,225 - CA264_04420 0.56 -0.4
1,022,317 + CA264_04420 0.63 -1.3
1,022,318 - CA264_04420 0.63 +2.4

Or see this region's nucleotide sequence