Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04375

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04370 and CA264_04375 are separated by 33 nucleotidesCA264_04375 and CA264_04380 are separated by 79 nucleotides CA264_04370: CA264_04370 - acyl transferase, at 1,011,891 to 1,012,856 _04370 CA264_04375: CA264_04375 - peptidase, at 1,012,890 to 1,013,804 _04375 CA264_04380: CA264_04380 - response regulator, at 1,013,884 to 1,015,050 _04380 Position (kb) 1012 1013 1014Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1012.069 kb on + strand, within CA264_04370at 1012.174 kb on + strand, within CA264_04370at 1012.219 kb on - strand, within CA264_04370at 1012.326 kb on + strand, within CA264_04370at 1012.327 kb on - strand, within CA264_04370at 1012.555 kb on + strand, within CA264_04370at 1012.580 kb on + strand, within CA264_04370at 1012.580 kb on + strand, within CA264_04370at 1012.581 kb on - strand, within CA264_04370at 1012.581 kb on - strand, within CA264_04370at 1012.644 kb on - strand, within CA264_04370at 1012.720 kb on + strand, within CA264_04370at 1012.721 kb on - strand, within CA264_04370at 1012.855 kb on - strandat 1012.907 kb on + strandat 1013.040 kb on + strand, within CA264_04375at 1013.125 kb on + strand, within CA264_04375at 1013.126 kb on - strand, within CA264_04375at 1013.126 kb on - strand, within CA264_04375at 1013.208 kb on + strand, within CA264_04375at 1013.257 kb on - strand, within CA264_04375at 1013.258 kb on + strand, within CA264_04375at 1013.258 kb on + strand, within CA264_04375at 1013.258 kb on + strand, within CA264_04375at 1013.325 kb on + strand, within CA264_04375at 1013.326 kb on - strand, within CA264_04375at 1013.330 kb on + strand, within CA264_04375at 1013.330 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.396 kb on - strand, within CA264_04375at 1013.396 kb on - strand, within CA264_04375at 1013.495 kb on + strand, within CA264_04375at 1013.496 kb on - strand, within CA264_04375at 1013.496 kb on - strand, within CA264_04375at 1013.509 kb on + strand, within CA264_04375at 1013.509 kb on + strand, within CA264_04375at 1013.547 kb on + strand, within CA264_04375at 1013.651 kb on - strand, within CA264_04375at 1013.772 kb on + strandat 1013.774 kb on + strandat 1013.906 kb on + strandat 1014.049 kb on - strand, within CA264_04380at 1014.469 kb on - strand, within CA264_04380at 1014.557 kb on - strand, within CA264_04380at 1014.557 kb on - strand, within CA264_04380at 1014.557 kb on - strand, within CA264_04380at 1014.627 kb on + strand, within CA264_04380at 1014.627 kb on + strand, within CA264_04380at 1014.631 kb on + strand, within CA264_04380at 1014.632 kb on - strand, within CA264_04380

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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1,012,069 + CA264_04370 0.18 -0.2
1,012,174 + CA264_04370 0.29 -0.7
1,012,219 - CA264_04370 0.34 -0.7
1,012,326 + CA264_04370 0.45 -1.2
1,012,327 - CA264_04370 0.45 +0.1
1,012,555 + CA264_04370 0.69 -1.3
1,012,580 + CA264_04370 0.71 +0.2
1,012,580 + CA264_04370 0.71 -0.1
1,012,581 - CA264_04370 0.71 -1.0
1,012,581 - CA264_04370 0.71 -1.5
1,012,644 - CA264_04370 0.78 -1.0
1,012,720 + CA264_04370 0.86 +0.6
1,012,721 - CA264_04370 0.86 +0.2
1,012,855 - -0.8
1,012,907 + -0.2
1,013,040 + CA264_04375 0.16 +1.2
1,013,125 + CA264_04375 0.26 +3.9
1,013,126 - CA264_04375 0.26 +0.2
1,013,126 - CA264_04375 0.26 +1.4
1,013,208 + CA264_04375 0.35 -0.4
1,013,257 - CA264_04375 0.40 +0.3
1,013,258 + CA264_04375 0.40 -2.7
1,013,258 + CA264_04375 0.40 -3.5
1,013,258 + CA264_04375 0.40 -0.4
1,013,325 + CA264_04375 0.48 -1.2
1,013,326 - CA264_04375 0.48 +0.4
1,013,330 + CA264_04375 0.48 -1.6
1,013,330 + CA264_04375 0.48 -1.3
1,013,395 + CA264_04375 0.55 -1.3
1,013,395 + CA264_04375 0.55 -1.7
1,013,395 + CA264_04375 0.55 -0.4
1,013,395 + CA264_04375 0.55 -0.5
1,013,395 + CA264_04375 0.55 -0.8
1,013,395 + CA264_04375 0.55 -0.4
1,013,396 - CA264_04375 0.55 +0.3
1,013,396 - CA264_04375 0.55 -1.1
1,013,495 + CA264_04375 0.66 -1.1
1,013,496 - CA264_04375 0.66 +0.8
1,013,496 - CA264_04375 0.66 -0.1
1,013,509 + CA264_04375 0.68 -1.9
1,013,509 + CA264_04375 0.68 -1.8
1,013,547 + CA264_04375 0.72 -1.4
1,013,651 - CA264_04375 0.83 -0.6
1,013,772 + -3.2
1,013,774 + -0.8
1,013,906 + -0.8
1,014,049 - CA264_04380 0.14 -1.3
1,014,469 - CA264_04380 0.50 -0.9
1,014,557 - CA264_04380 0.58 +1.0
1,014,557 - CA264_04380 0.58 -1.8
1,014,557 - CA264_04380 0.58 -1.2
1,014,627 + CA264_04380 0.64 -1.1
1,014,627 + CA264_04380 0.64 -0.4
1,014,631 + CA264_04380 0.64 -1.3
1,014,632 - CA264_04380 0.64 -0.6

Or see this region's nucleotide sequence