Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02230

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02225 and CA264_02230 are separated by 253 nucleotidesCA264_02230 and CA264_02235 are separated by 40 nucleotidesCA264_02235 and CA264_02240 overlap by 1 nucleotides CA264_02225: CA264_02225 - purine-nucleoside phosphorylase, at 513,248 to 514,063 _02225 CA264_02230: CA264_02230 - hypothetical protein, at 514,317 to 515,225 _02230 CA264_02235: CA264_02235 - hypothetical protein, at 515,266 to 516,081 _02235 CA264_02240: CA264_02240 - TonB-dependent receptor, at 516,081 to 518,411 _02240 Position (kb) 514 515 516Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 513.322 kb on + strandat 513.322 kb on + strandat 513.322 kb on + strandat 513.322 kb on + strandat 513.323 kb on - strandat 513.324 kb on + strandat 513.325 kb on - strandat 513.352 kb on - strand, within CA264_02225at 513.497 kb on + strand, within CA264_02225at 513.497 kb on + strand, within CA264_02225at 513.497 kb on + strand, within CA264_02225at 513.497 kb on + strand, within CA264_02225at 513.498 kb on - strand, within CA264_02225at 513.498 kb on - strand, within CA264_02225at 513.506 kb on + strand, within CA264_02225at 513.507 kb on - strand, within CA264_02225at 513.722 kb on + strand, within CA264_02225at 513.723 kb on - strand, within CA264_02225at 513.723 kb on - strand, within CA264_02225at 513.723 kb on - strand, within CA264_02225at 513.754 kb on + strand, within CA264_02225at 513.794 kb on + strand, within CA264_02225at 513.843 kb on - strand, within CA264_02225at 513.894 kb on + strand, within CA264_02225at 513.894 kb on + strand, within CA264_02225at 513.950 kb on - strand, within CA264_02225at 514.136 kb on - strandat 514.204 kb on + strandat 514.340 kb on - strandat 514.341 kb on + strandat 514.342 kb on - strandat 514.342 kb on - strandat 514.416 kb on - strand, within CA264_02230at 514.417 kb on + strand, within CA264_02230at 514.486 kb on - strand, within CA264_02230at 514.486 kb on - strand, within CA264_02230at 514.496 kb on - strand, within CA264_02230at 514.500 kb on - strand, within CA264_02230at 514.538 kb on - strand, within CA264_02230at 514.693 kb on + strand, within CA264_02230at 514.849 kb on + strand, within CA264_02230at 514.849 kb on + strand, within CA264_02230at 514.850 kb on - strand, within CA264_02230at 514.850 kb on - strand, within CA264_02230at 514.850 kb on - strand, within CA264_02230at 514.850 kb on - strand, within CA264_02230at 514.850 kb on - strand, within CA264_02230at 514.883 kb on - strand, within CA264_02230at 514.883 kb on - strand, within CA264_02230at 515.084 kb on - strand, within CA264_02230at 515.106 kb on - strand, within CA264_02230at 515.112 kb on - strand, within CA264_02230at 515.188 kb on + strandat 515.191 kb on - strandat 515.267 kb on + strandat 515.332 kb on + strandat 515.345 kb on - strandat 515.436 kb on - strand, within CA264_02235at 515.436 kb on - strand, within CA264_02235at 515.436 kb on - strand, within CA264_02235at 515.444 kb on - strand, within CA264_02235at 515.444 kb on - strand, within CA264_02235at 515.444 kb on - strand, within CA264_02235at 515.469 kb on - strand, within CA264_02235at 515.473 kb on - strand, within CA264_02235at 515.487 kb on - strand, within CA264_02235at 515.493 kb on + strand, within CA264_02235at 515.493 kb on + strand, within CA264_02235at 515.499 kb on + strand, within CA264_02235at 515.509 kb on - strand, within CA264_02235at 515.509 kb on - strand, within CA264_02235at 515.582 kb on + strand, within CA264_02235at 515.583 kb on - strand, within CA264_02235at 515.583 kb on - strand, within CA264_02235at 515.738 kb on + strand, within CA264_02235at 515.739 kb on - strand, within CA264_02235at 515.779 kb on - strand, within CA264_02235at 515.779 kb on - strand, within CA264_02235at 515.786 kb on + strand, within CA264_02235at 515.787 kb on - strand, within CA264_02235at 515.858 kb on + strand, within CA264_02235at 515.859 kb on - strand, within CA264_02235at 515.859 kb on - strand, within CA264_02235at 515.859 kb on - strand, within CA264_02235at 515.859 kb on - strand, within CA264_02235at 515.969 kb on - strand, within CA264_02235at 516.050 kb on - strandat 516.061 kb on + strandat 516.062 kb on - strandat 516.089 kb on + strandat 516.095 kb on + strandat 516.095 kb on + strandat 516.095 kb on + strandat 516.096 kb on - strandat 516.096 kb on - strandat 516.097 kb on + strandat 516.098 kb on - strandat 516.217 kb on + strandat 516.217 kb on + strandat 516.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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513,322 + +0.1
513,322 + +0.5
513,322 + +0.5
513,322 + -1.0
513,323 - +0.3
513,324 + -0.0
513,325 - +0.1
513,352 - CA264_02225 0.13 -0.3
513,497 + CA264_02225 0.31 -1.3
513,497 + CA264_02225 0.31 -1.7
513,497 + CA264_02225 0.31 -0.7
513,497 + CA264_02225 0.31 -0.4
513,498 - CA264_02225 0.31 +0.1
513,498 - CA264_02225 0.31 +0.3
513,506 + CA264_02225 0.32 -1.1
513,507 - CA264_02225 0.32 -0.3
513,722 + CA264_02225 0.58 -1.4
513,723 - CA264_02225 0.58 -0.1
513,723 - CA264_02225 0.58 -0.5
513,723 - CA264_02225 0.58 -1.0
513,754 + CA264_02225 0.62 -0.9
513,794 + CA264_02225 0.67 -1.9
513,843 - CA264_02225 0.73 +0.8
513,894 + CA264_02225 0.79 -2.5
513,894 + CA264_02225 0.79 -1.5
513,950 - CA264_02225 0.86 -1.0
514,136 - -0.3
514,204 + -0.3
514,340 - +0.1
514,341 + -0.9
514,342 - -0.3
514,342 - -2.4
514,416 - CA264_02230 0.11 -1.3
514,417 + CA264_02230 0.11 -1.3
514,486 - CA264_02230 0.19 +0.8
514,486 - CA264_02230 0.19 -1.5
514,496 - CA264_02230 0.20 -0.8
514,500 - CA264_02230 0.20 -3.3
514,538 - CA264_02230 0.24 -1.4
514,693 + CA264_02230 0.41 +0.2
514,849 + CA264_02230 0.59 +0.1
514,849 + CA264_02230 0.59 -0.2
514,850 - CA264_02230 0.59 -1.9
514,850 - CA264_02230 0.59 -1.1
514,850 - CA264_02230 0.59 +1.3
514,850 - CA264_02230 0.59 +1.1
514,850 - CA264_02230 0.59 -1.5
514,883 - CA264_02230 0.62 +0.5
514,883 - CA264_02230 0.62 -0.0
515,084 - CA264_02230 0.84 -0.1
515,106 - CA264_02230 0.87 -0.6
515,112 - CA264_02230 0.87 -0.6
515,188 + +1.1
515,191 - -0.9
515,267 + -0.8
515,332 + -0.1
515,345 - -1.5
515,436 - CA264_02235 0.21 -3.1
515,436 - CA264_02235 0.21 -0.8
515,436 - CA264_02235 0.21 -1.7
515,444 - CA264_02235 0.22 -2.4
515,444 - CA264_02235 0.22 -1.4
515,444 - CA264_02235 0.22 -1.4
515,469 - CA264_02235 0.25 -0.7
515,473 - CA264_02235 0.25 -1.8
515,487 - CA264_02235 0.27 -0.8
515,493 + CA264_02235 0.28 +0.1
515,493 + CA264_02235 0.28 -1.5
515,499 + CA264_02235 0.29 -0.7
515,509 - CA264_02235 0.30 -0.6
515,509 - CA264_02235 0.30 -2.0
515,582 + CA264_02235 0.39 -0.2
515,583 - CA264_02235 0.39 +1.9
515,583 - CA264_02235 0.39 +0.2
515,738 + CA264_02235 0.58 -1.5
515,739 - CA264_02235 0.58 -1.1
515,779 - CA264_02235 0.63 +1.1
515,779 - CA264_02235 0.63 -1.2
515,786 + CA264_02235 0.64 -0.7
515,787 - CA264_02235 0.64 -1.4
515,858 + CA264_02235 0.73 -0.1
515,859 - CA264_02235 0.73 -0.5
515,859 - CA264_02235 0.73 -0.8
515,859 - CA264_02235 0.73 -2.5
515,859 - CA264_02235 0.73 +0.3
515,969 - CA264_02235 0.86 -0.2
516,050 - -2.1
516,061 + -0.4
516,062 - -1.6
516,089 + +0.9
516,095 + -2.1
516,095 + -0.3
516,095 + -0.3
516,096 - -2.1
516,096 - -0.7
516,097 + -0.2
516,098 - -1.6
516,217 + -0.6
516,217 + -1.0
516,218 - -0.0

Or see this region's nucleotide sequence