Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01515

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01505 and CA264_01510 are separated by 46 nucleotidesCA264_01510 and CA264_01515 are separated by 53 nucleotidesCA264_01515 and CA264_01520 are separated by 272 nucleotides CA264_01505: CA264_01505 - hypothetical protein, at 356,261 to 356,800 _01505 CA264_01510: CA264_01510 - hypothetical protein, at 356,847 to 357,368 _01510 CA264_01515: CA264_01515 - hypothetical protein, at 357,422 to 358,621 _01515 CA264_01520: CA264_01520 - adenylosuccinate lyase, at 358,894 to 360,246 _01520 Position (kb) 357 358 359Strain fitness (log2 ratio) -2 -1 0 1 2at 356.656 kb on + strand, within CA264_01505at 356.786 kb on + strandat 356.786 kb on + strandat 356.786 kb on + strandat 356.787 kb on - strandat 356.825 kb on + strandat 356.827 kb on + strandat 356.827 kb on + strandat 356.827 kb on + strandat 356.827 kb on + strandat 356.933 kb on - strand, within CA264_01510at 356.985 kb on + strand, within CA264_01510at 356.986 kb on - strand, within CA264_01510at 357.054 kb on + strand, within CA264_01510at 357.080 kb on - strand, within CA264_01510at 357.084 kb on - strand, within CA264_01510at 357.084 kb on - strand, within CA264_01510at 357.160 kb on + strand, within CA264_01510at 357.161 kb on - strand, within CA264_01510at 357.161 kb on - strand, within CA264_01510at 357.231 kb on - strand, within CA264_01510at 357.283 kb on - strand, within CA264_01510at 357.297 kb on - strand, within CA264_01510at 357.383 kb on - strandat 357.407 kb on - strandat 357.407 kb on - strandat 357.424 kb on - strandat 357.437 kb on - strandat 357.511 kb on + strandat 357.643 kb on - strand, within CA264_01515at 357.667 kb on + strand, within CA264_01515at 357.667 kb on + strand, within CA264_01515at 357.671 kb on + strand, within CA264_01515at 357.672 kb on - strand, within CA264_01515at 357.678 kb on - strand, within CA264_01515at 357.678 kb on - strand, within CA264_01515at 357.703 kb on - strand, within CA264_01515at 357.706 kb on + strand, within CA264_01515at 357.706 kb on + strand, within CA264_01515at 357.707 kb on - strand, within CA264_01515at 357.889 kb on + strand, within CA264_01515at 357.889 kb on + strand, within CA264_01515at 357.944 kb on + strand, within CA264_01515at 357.975 kb on + strand, within CA264_01515at 357.975 kb on + strand, within CA264_01515at 358.030 kb on + strand, within CA264_01515at 358.153 kb on + strand, within CA264_01515at 358.154 kb on - strand, within CA264_01515at 358.202 kb on - strand, within CA264_01515at 358.319 kb on - strand, within CA264_01515at 358.441 kb on + strand, within CA264_01515at 358.441 kb on + strand, within CA264_01515at 358.442 kb on - strand, within CA264_01515at 358.463 kb on + strand, within CA264_01515at 358.463 kb on + strand, within CA264_01515at 358.463 kb on + strand, within CA264_01515at 358.464 kb on - strand, within CA264_01515at 358.483 kb on + strand, within CA264_01515at 358.490 kb on - strand, within CA264_01515at 358.607 kb on - strandat 358.640 kb on + strandat 358.694 kb on + strandat 358.694 kb on + strandat 358.695 kb on - strandat 358.702 kb on - strandat 358.796 kb on + strandat 358.864 kb on + strandat 358.867 kb on - strandat 358.879 kb on - strandat 358.892 kb on - strandat 358.895 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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356,656 + CA264_01505 0.73 +1.1
356,786 + +0.7
356,786 + -0.4
356,786 + -0.1
356,787 - +0.2
356,825 + +0.5
356,827 + +0.4
356,827 + -0.3
356,827 + +0.5
356,827 + +0.1
356,933 - CA264_01510 0.16 +1.4
356,985 + CA264_01510 0.26 -0.0
356,986 - CA264_01510 0.27 -0.8
357,054 + CA264_01510 0.40 -1.5
357,080 - CA264_01510 0.45 +0.6
357,084 - CA264_01510 0.45 +1.1
357,084 - CA264_01510 0.45 +1.3
357,160 + CA264_01510 0.60 -1.7
357,161 - CA264_01510 0.60 +0.4
357,161 - CA264_01510 0.60 +2.1
357,231 - CA264_01510 0.74 +0.7
357,283 - CA264_01510 0.84 +1.1
357,297 - CA264_01510 0.86 +1.2
357,383 - +1.4
357,407 - +0.6
357,407 - +0.2
357,424 - +1.1
357,437 - -0.5
357,511 + +0.0
357,643 - CA264_01515 0.18 +0.7
357,667 + CA264_01515 0.20 +0.7
357,667 + CA264_01515 0.20 -1.5
357,671 + CA264_01515 0.21 +0.3
357,672 - CA264_01515 0.21 -0.5
357,678 - CA264_01515 0.21 -0.2
357,678 - CA264_01515 0.21 +2.1
357,703 - CA264_01515 0.23 -1.4
357,706 + CA264_01515 0.24 +0.4
357,706 + CA264_01515 0.24 -0.8
357,707 - CA264_01515 0.24 -0.3
357,889 + CA264_01515 0.39 -1.4
357,889 + CA264_01515 0.39 -0.7
357,944 + CA264_01515 0.43 -0.5
357,975 + CA264_01515 0.46 -0.4
357,975 + CA264_01515 0.46 -0.4
358,030 + CA264_01515 0.51 -0.6
358,153 + CA264_01515 0.61 -0.0
358,154 - CA264_01515 0.61 +0.1
358,202 - CA264_01515 0.65 +0.7
358,319 - CA264_01515 0.75 -1.4
358,441 + CA264_01515 0.85 +0.7
358,441 + CA264_01515 0.85 -0.7
358,442 - CA264_01515 0.85 +1.5
358,463 + CA264_01515 0.87 -0.5
358,463 + CA264_01515 0.87 -0.4
358,463 + CA264_01515 0.87 -0.5
358,464 - CA264_01515 0.87 +2.2
358,483 + CA264_01515 0.88 -2.6
358,490 - CA264_01515 0.89 +0.7
358,607 - +0.0
358,640 + -1.3
358,694 + -1.6
358,694 + -2.7
358,695 - +0.2
358,702 - -1.1
358,796 + -2.1
358,864 + -1.0
358,867 - -0.5
358,879 - -2.1
358,892 - -0.3
358,895 + -1.7

Or see this region's nucleotide sequence