Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01370

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01365 and CA264_01370 are separated by 13 nucleotidesCA264_01370 and CA264_01375 are separated by 168 nucleotidesCA264_01375 and CA264_01380 are separated by 27 nucleotides CA264_01365: CA264_01365 - two-component sensor histidine kinase, at 322,170 to 325,808 _01365 CA264_01370: CA264_01370 - hypothetical protein, at 325,822 to 329,289 _01370 CA264_01375: CA264_01375 - hypothetical protein, at 329,458 to 329,898 _01375 CA264_01380: CA264_01380 - ADP-L-glycero-D-mannoheptose-6-epimerase, at 329,926 to 330,891 _01380 Position (kb) 325 326 327 328 329 330Strain fitness (log2 ratio) -2 -1 0 1 2 3at 324.905 kb on + strand, within CA264_01365at 324.918 kb on - strand, within CA264_01365at 324.964 kb on + strand, within CA264_01365at 325.079 kb on + strand, within CA264_01365at 325.218 kb on + strand, within CA264_01365at 325.300 kb on + strand, within CA264_01365at 325.300 kb on + strand, within CA264_01365at 325.301 kb on - strand, within CA264_01365at 325.306 kb on + strand, within CA264_01365at 325.559 kb on - strandat 325.559 kb on - strandat 325.597 kb on + strandat 325.613 kb on + strandat 325.639 kb on + strandat 325.639 kb on + strandat 325.779 kb on + strandat 325.779 kb on + strandat 325.851 kb on - strandat 325.901 kb on - strandat 325.901 kb on - strandat 325.998 kb on + strandat 326.115 kb on - strandat 326.154 kb on + strandat 326.195 kb on - strand, within CA264_01370at 326.247 kb on + strand, within CA264_01370at 326.317 kb on - strand, within CA264_01370at 326.350 kb on - strand, within CA264_01370at 326.351 kb on + strand, within CA264_01370at 326.352 kb on - strand, within CA264_01370at 326.352 kb on - strand, within CA264_01370at 326.352 kb on - strand, within CA264_01370at 326.352 kb on - strand, within CA264_01370at 326.352 kb on - strand, within CA264_01370at 326.355 kb on + strand, within CA264_01370at 326.356 kb on - strand, within CA264_01370at 326.356 kb on - strand, within CA264_01370at 326.435 kb on + strand, within CA264_01370at 326.438 kb on - strand, within CA264_01370at 326.438 kb on - strand, within CA264_01370at 326.506 kb on + strand, within CA264_01370at 326.507 kb on - strand, within CA264_01370at 326.507 kb on - strand, within CA264_01370at 326.511 kb on + strand, within CA264_01370at 326.547 kb on + strand, within CA264_01370at 326.547 kb on + strand, within CA264_01370at 326.548 kb on - strand, within CA264_01370at 326.548 kb on - strand, within CA264_01370at 326.548 kb on - strand, within CA264_01370at 326.554 kb on - strand, within CA264_01370at 326.695 kb on + strand, within CA264_01370at 326.695 kb on + strand, within CA264_01370at 326.695 kb on + strand, within CA264_01370at 326.741 kb on + strand, within CA264_01370at 326.742 kb on - strand, within CA264_01370at 326.764 kb on + strand, within CA264_01370at 326.765 kb on - strand, within CA264_01370at 326.799 kb on + strand, within CA264_01370at 326.800 kb on - strand, within CA264_01370at 326.887 kb on + strand, within CA264_01370at 326.903 kb on - strand, within CA264_01370at 326.929 kb on + strand, within CA264_01370at 326.930 kb on - strand, within CA264_01370at 326.938 kb on + strand, within CA264_01370at 326.942 kb on - strand, within CA264_01370at 326.942 kb on - strand, within CA264_01370at 326.944 kb on - strand, within CA264_01370at 326.944 kb on - strand, within CA264_01370at 326.973 kb on + strand, within CA264_01370at 327.017 kb on + strand, within CA264_01370at 327.067 kb on + strand, within CA264_01370at 327.083 kb on + strand, within CA264_01370at 327.088 kb on + strand, within CA264_01370at 327.089 kb on - strand, within CA264_01370at 327.089 kb on - strand, within CA264_01370at 327.089 kb on - strand, within CA264_01370at 327.110 kb on - strand, within CA264_01370at 327.139 kb on + strand, within CA264_01370at 327.140 kb on - strand, within CA264_01370at 327.145 kb on + strand, within CA264_01370at 327.173 kb on - strand, within CA264_01370at 327.186 kb on + strand, within CA264_01370at 327.194 kb on + strand, within CA264_01370at 327.214 kb on + strand, within CA264_01370at 327.214 kb on + strand, within CA264_01370at 327.214 kb on + strand, within CA264_01370at 327.215 kb on - strand, within CA264_01370at 327.215 kb on - strand, within CA264_01370at 327.269 kb on + strand, within CA264_01370at 327.278 kb on + strand, within CA264_01370at 327.278 kb on + strand, within CA264_01370at 327.292 kb on + strand, within CA264_01370at 327.292 kb on + strand, within CA264_01370at 327.292 kb on + strand, within CA264_01370at 327.293 kb on - strand, within CA264_01370at 327.322 kb on - strand, within CA264_01370at 327.355 kb on + strand, within CA264_01370at 327.407 kb on - strand, within CA264_01370at 327.407 kb on - strand, within CA264_01370at 327.495 kb on - strand, within CA264_01370at 327.535 kb on + strand, within CA264_01370at 327.535 kb on + strand, within CA264_01370at 327.535 kb on + strand, within CA264_01370at 327.535 kb on + strand, within CA264_01370at 327.535 kb on + strand, within CA264_01370at 327.536 kb on - strand, within CA264_01370at 327.536 kb on - strand, within CA264_01370at 327.542 kb on - strand, within CA264_01370at 327.544 kb on - strand, within CA264_01370at 327.544 kb on - strand, within CA264_01370at 327.567 kb on - strand, within CA264_01370at 327.567 kb on - strand, within CA264_01370at 327.609 kb on - strand, within CA264_01370at 327.636 kb on + strand, within CA264_01370at 327.637 kb on - strand, within CA264_01370at 327.642 kb on + strand, within CA264_01370at 327.642 kb on + strand, within CA264_01370at 327.642 kb on + strand, within CA264_01370at 327.642 kb on + strand, within CA264_01370at 327.688 kb on + strand, within CA264_01370at 327.688 kb on + strand, within CA264_01370at 327.749 kb on + strand, within CA264_01370at 327.749 kb on + strand, within CA264_01370at 327.750 kb on - strand, within CA264_01370at 327.750 kb on - strand, within CA264_01370at 327.804 kb on + strand, within CA264_01370at 327.856 kb on + strand, within CA264_01370at 327.889 kb on + strand, within CA264_01370at 327.892 kb on - strand, within CA264_01370at 327.892 kb on - strand, within CA264_01370at 327.909 kb on + strand, within CA264_01370at 327.910 kb on - strand, within CA264_01370at 327.921 kb on + strand, within CA264_01370at 327.974 kb on - strand, within CA264_01370at 328.088 kb on - strand, within CA264_01370at 328.148 kb on - strand, within CA264_01370at 328.153 kb on - strand, within CA264_01370at 328.188 kb on + strand, within CA264_01370at 328.202 kb on + strand, within CA264_01370at 328.289 kb on - strand, within CA264_01370at 328.327 kb on + strand, within CA264_01370at 328.327 kb on + strand, within CA264_01370at 328.403 kb on + strand, within CA264_01370at 328.404 kb on - strand, within CA264_01370at 328.404 kb on - strand, within CA264_01370at 328.412 kb on - strand, within CA264_01370at 328.412 kb on - strand, within CA264_01370at 328.429 kb on + strand, within CA264_01370at 328.663 kb on + strand, within CA264_01370at 328.668 kb on + strand, within CA264_01370at 328.688 kb on - strand, within CA264_01370at 328.699 kb on + strand, within CA264_01370at 328.830 kb on + strand, within CA264_01370at 328.830 kb on + strand, within CA264_01370at 328.831 kb on - strand, within CA264_01370at 328.831 kb on - strand, within CA264_01370at 328.881 kb on - strand, within CA264_01370at 328.945 kb on - strandat 328.949 kb on - strandat 328.949 kb on - strandat 328.954 kb on + strandat 328.955 kb on - strandat 328.955 kb on - strandat 329.046 kb on - strandat 329.073 kb on + strandat 329.073 kb on + strandat 329.074 kb on - strandat 329.074 kb on - strandat 329.074 kb on - strandat 329.113 kb on + strandat 329.113 kb on + strandat 329.113 kb on + strandat 329.114 kb on - strandat 329.114 kb on - strandat 329.122 kb on + strandat 329.218 kb on + strandat 329.219 kb on - strandat 329.243 kb on + strandat 329.244 kb on - strandat 329.339 kb on + strandat 329.367 kb on + strandat 329.368 kb on - strandat 329.416 kb on + strandat 329.417 kb on - strandat 329.419 kb on + strandat 329.420 kb on - strandat 329.420 kb on - strandat 329.421 kb on + strandat 329.421 kb on + strandat 329.422 kb on - strandat 329.428 kb on - strandat 329.454 kb on + strandat 329.502 kb on - strand, within CA264_01375at 329.525 kb on + strand, within CA264_01375at 329.525 kb on + strand, within CA264_01375at 329.549 kb on - strand, within CA264_01375at 329.581 kb on - strand, within CA264_01375at 329.584 kb on + strand, within CA264_01375at 329.585 kb on - strand, within CA264_01375at 329.585 kb on - strand, within CA264_01375at 329.634 kb on + strand, within CA264_01375at 329.711 kb on + strand, within CA264_01375at 329.711 kb on + strand, within CA264_01375at 329.712 kb on - strand, within CA264_01375at 329.716 kb on + strand, within CA264_01375at 329.743 kb on - strand, within CA264_01375at 329.748 kb on - strand, within CA264_01375at 329.783 kb on - strand, within CA264_01375at 329.783 kb on - strand, within CA264_01375at 329.799 kb on + strand, within CA264_01375at 329.800 kb on - strand, within CA264_01375at 329.804 kb on + strand, within CA264_01375at 329.832 kb on + strand, within CA264_01375at 329.832 kb on + strand, within CA264_01375at 329.833 kb on - strand, within CA264_01375at 329.833 kb on - strand, within CA264_01375at 329.833 kb on - strand, within CA264_01375at 329.833 kb on - strand, within CA264_01375at 329.833 kb on - strand, within CA264_01375at 329.844 kb on + strand, within CA264_01375at 329.845 kb on - strand, within CA264_01375at 329.901 kb on + strandat 329.903 kb on + strandat 329.927 kb on + strandat 329.927 kb on + strandat 329.928 kb on - strandat 329.933 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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324,905 + CA264_01365 0.75 -2.2
324,918 - CA264_01365 0.76 +1.4
324,964 + CA264_01365 0.77 -1.6
325,079 + CA264_01365 0.80 -0.1
325,218 + CA264_01365 0.84 -1.3
325,300 + CA264_01365 0.86 -0.2
325,300 + CA264_01365 0.86 -2.6
325,301 - CA264_01365 0.86 -1.8
325,306 + CA264_01365 0.86 -1.9
325,559 - -1.9
325,559 - -1.3
325,597 + +0.7
325,613 + -2.5
325,639 + -0.5
325,639 + -1.6
325,779 + +2.1
325,779 + -1.7
325,851 - +0.8
325,901 - +1.3
325,901 - +0.3
325,998 + +0.1
326,115 - -1.0
326,154 + +1.8
326,195 - CA264_01370 0.11 +2.8
326,247 + CA264_01370 0.12 +1.3
326,317 - CA264_01370 0.14 +0.9
326,350 - CA264_01370 0.15 +0.1
326,351 + CA264_01370 0.15 +0.3
326,352 - CA264_01370 0.15 +2.1
326,352 - CA264_01370 0.15 +0.3
326,352 - CA264_01370 0.15 -0.3
326,352 - CA264_01370 0.15 +0.1
326,352 - CA264_01370 0.15 +0.8
326,355 + CA264_01370 0.15 +0.0
326,356 - CA264_01370 0.15 +0.5
326,356 - CA264_01370 0.15 +1.3
326,435 + CA264_01370 0.18 +0.6
326,438 - CA264_01370 0.18 -0.6
326,438 - CA264_01370 0.18 -0.2
326,506 + CA264_01370 0.20 +0.7
326,507 - CA264_01370 0.20 +0.3
326,507 - CA264_01370 0.20 +0.4
326,511 + CA264_01370 0.20 +0.5
326,547 + CA264_01370 0.21 +1.2
326,547 + CA264_01370 0.21 +0.7
326,548 - CA264_01370 0.21 +0.5
326,548 - CA264_01370 0.21 +1.3
326,548 - CA264_01370 0.21 -0.4
326,554 - CA264_01370 0.21 +0.7
326,695 + CA264_01370 0.25 +0.4
326,695 + CA264_01370 0.25 +1.0
326,695 + CA264_01370 0.25 -0.3
326,741 + CA264_01370 0.26 +0.9
326,742 - CA264_01370 0.27 +0.2
326,764 + CA264_01370 0.27 +1.8
326,765 - CA264_01370 0.27 +1.0
326,799 + CA264_01370 0.28 +1.8
326,800 - CA264_01370 0.28 +1.4
326,887 + CA264_01370 0.31 +0.1
326,903 - CA264_01370 0.31 +1.8
326,929 + CA264_01370 0.32 +1.2
326,930 - CA264_01370 0.32 -0.4
326,938 + CA264_01370 0.32 +0.3
326,942 - CA264_01370 0.32 +0.4
326,942 - CA264_01370 0.32 +1.8
326,944 - CA264_01370 0.32 +0.9
326,944 - CA264_01370 0.32 +0.3
326,973 + CA264_01370 0.33 +1.4
327,017 + CA264_01370 0.34 +0.2
327,067 + CA264_01370 0.36 +1.1
327,083 + CA264_01370 0.36 +1.5
327,088 + CA264_01370 0.37 -1.3
327,089 - CA264_01370 0.37 +2.6
327,089 - CA264_01370 0.37 +0.5
327,089 - CA264_01370 0.37 +2.3
327,110 - CA264_01370 0.37 +1.2
327,139 + CA264_01370 0.38 -0.4
327,140 - CA264_01370 0.38 +1.6
327,145 + CA264_01370 0.38 +2.0
327,173 - CA264_01370 0.39 +0.7
327,186 + CA264_01370 0.39 +0.5
327,194 + CA264_01370 0.40 +2.9
327,214 + CA264_01370 0.40 +1.0
327,214 + CA264_01370 0.40 +0.4
327,214 + CA264_01370 0.40 +0.5
327,215 - CA264_01370 0.40 -0.4
327,215 - CA264_01370 0.40 +0.3
327,269 + CA264_01370 0.42 +0.6
327,278 + CA264_01370 0.42 +0.3
327,278 + CA264_01370 0.42 +0.8
327,292 + CA264_01370 0.42 +0.9
327,292 + CA264_01370 0.42 +0.9
327,292 + CA264_01370 0.42 -0.1
327,293 - CA264_01370 0.42 +0.9
327,322 - CA264_01370 0.43 +0.2
327,355 + CA264_01370 0.44 +0.5
327,407 - CA264_01370 0.46 +0.4
327,407 - CA264_01370 0.46 +1.0
327,495 - CA264_01370 0.48 +0.3
327,535 + CA264_01370 0.49 +0.4
327,535 + CA264_01370 0.49 -1.1
327,535 + CA264_01370 0.49 -0.7
327,535 + CA264_01370 0.49 +0.4
327,535 + CA264_01370 0.49 -1.4
327,536 - CA264_01370 0.49 -0.5
327,536 - CA264_01370 0.49 -0.2
327,542 - CA264_01370 0.50 +1.3
327,544 - CA264_01370 0.50 +0.5
327,544 - CA264_01370 0.50 +0.3
327,567 - CA264_01370 0.50 +0.1
327,567 - CA264_01370 0.50 +0.3
327,609 - CA264_01370 0.52 -0.4
327,636 + CA264_01370 0.52 +0.8
327,637 - CA264_01370 0.52 +0.6
327,642 + CA264_01370 0.52 +0.4
327,642 + CA264_01370 0.52 -0.2
327,642 + CA264_01370 0.52 -0.8
327,642 + CA264_01370 0.52 -0.7
327,688 + CA264_01370 0.54 +1.1
327,688 + CA264_01370 0.54 +0.4
327,749 + CA264_01370 0.56 +0.7
327,749 + CA264_01370 0.56 +0.4
327,750 - CA264_01370 0.56 +0.6
327,750 - CA264_01370 0.56 +1.3
327,804 + CA264_01370 0.57 +0.6
327,856 + CA264_01370 0.59 -0.5
327,889 + CA264_01370 0.60 +0.4
327,892 - CA264_01370 0.60 +0.7
327,892 - CA264_01370 0.60 +1.0
327,909 + CA264_01370 0.60 -0.2
327,910 - CA264_01370 0.60 -1.8
327,921 + CA264_01370 0.61 +1.0
327,974 - CA264_01370 0.62 +1.5
328,088 - CA264_01370 0.65 +1.1
328,148 - CA264_01370 0.67 +1.2
328,153 - CA264_01370 0.67 +0.0
328,188 + CA264_01370 0.68 +0.9
328,202 + CA264_01370 0.69 -0.1
328,289 - CA264_01370 0.71 +1.7
328,327 + CA264_01370 0.72 -0.2
328,327 + CA264_01370 0.72 +0.7
328,403 + CA264_01370 0.74 -0.3
328,404 - CA264_01370 0.74 +0.3
328,404 - CA264_01370 0.74 +1.9
328,412 - CA264_01370 0.75 +0.2
328,412 - CA264_01370 0.75 +0.5
328,429 + CA264_01370 0.75 +0.5
328,663 + CA264_01370 0.82 -2.0
328,668 + CA264_01370 0.82 -0.0
328,688 - CA264_01370 0.83 -0.2
328,699 + CA264_01370 0.83 +0.9
328,830 + CA264_01370 0.87 -0.5
328,830 + CA264_01370 0.87 -0.3
328,831 - CA264_01370 0.87 -0.1
328,831 - CA264_01370 0.87 -0.2
328,881 - CA264_01370 0.88 -0.4
328,945 - -0.3
328,949 - +0.5
328,949 - -2.3
328,954 + -0.7
328,955 - +0.6
328,955 - -0.7
329,046 - +0.6
329,073 + -0.4
329,073 + -0.3
329,074 - +1.5
329,074 - +1.6
329,074 - +1.2
329,113 + -0.4
329,113 + -0.8
329,113 + -0.5
329,114 - +2.5
329,114 - +0.6
329,122 + -0.6
329,218 + -0.6
329,219 - +2.2
329,243 + -1.5
329,244 - +0.5
329,339 + +2.1
329,367 + -0.7
329,368 - +0.6
329,416 + -0.7
329,417 - +0.8
329,419 + -1.2
329,420 - -0.6
329,420 - +3.1
329,421 + -0.2
329,421 + -0.8
329,422 - +0.1
329,428 - -0.1
329,454 + -1.0
329,502 - CA264_01375 0.10 +0.9
329,525 + CA264_01375 0.15 -0.9
329,525 + CA264_01375 0.15 -1.8
329,549 - CA264_01375 0.21 +1.1
329,581 - CA264_01375 0.28 -1.4
329,584 + CA264_01375 0.29 -1.3
329,585 - CA264_01375 0.29 -0.2
329,585 - CA264_01375 0.29 -0.8
329,634 + CA264_01375 0.40 -1.6
329,711 + CA264_01375 0.57 -1.0
329,711 + CA264_01375 0.57 +0.2
329,712 - CA264_01375 0.58 +0.0
329,716 + CA264_01375 0.59 -0.1
329,743 - CA264_01375 0.65 +1.0
329,748 - CA264_01375 0.66 +0.4
329,783 - CA264_01375 0.74 +0.9
329,783 - CA264_01375 0.74 -0.2
329,799 + CA264_01375 0.77 -0.9
329,800 - CA264_01375 0.78 -1.2
329,804 + CA264_01375 0.78 -0.7
329,832 + CA264_01375 0.85 -1.4
329,832 + CA264_01375 0.85 -0.5
329,833 - CA264_01375 0.85 +0.6
329,833 - CA264_01375 0.85 +0.3
329,833 - CA264_01375 0.85 +0.9
329,833 - CA264_01375 0.85 -0.6
329,833 - CA264_01375 0.85 +0.7
329,844 + CA264_01375 0.88 -1.1
329,845 - CA264_01375 0.88 +1.4
329,901 + +0.7
329,903 + -0.0
329,927 + -1.3
329,927 + -0.1
329,928 - -1.7
329,933 + -0.4

Or see this region's nucleotide sequence