Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00625

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00615 and CA264_00620 are separated by 92 nucleotidesCA264_00620 and CA264_00625 are separated by 70 nucleotidesCA264_00625 and CA264_00630 are separated by 87 nucleotides CA264_00615: CA264_00615 - F0F1 ATP synthase subunit beta, at 135,149 to 136,660 _00615 CA264_00620: CA264_00620 - ATP synthase F1 subunit epsilon, at 136,753 to 136,998 _00620 CA264_00625: CA264_00625 - serine hydrolase, at 137,069 to 138,664 _00625 CA264_00630: CA264_00630 - cystathionine beta-lyase, at 138,752 to 139,882 _00630 Position (kb) 137 138 139Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 136.672 kb on + strandat 136.997 kb on - strandat 137.014 kb on + strandat 137.017 kb on - strandat 137.196 kb on + strandat 137.196 kb on + strandat 137.196 kb on + strandat 137.299 kb on + strand, within CA264_00625at 137.332 kb on - strand, within CA264_00625at 137.332 kb on - strand, within CA264_00625at 137.334 kb on - strand, within CA264_00625at 137.339 kb on + strand, within CA264_00625at 137.339 kb on + strand, within CA264_00625at 137.340 kb on - strand, within CA264_00625at 137.356 kb on + strand, within CA264_00625at 137.494 kb on - strand, within CA264_00625at 137.526 kb on + strand, within CA264_00625at 137.536 kb on + strand, within CA264_00625at 137.543 kb on - strand, within CA264_00625at 137.624 kb on + strand, within CA264_00625at 137.624 kb on + strand, within CA264_00625at 137.638 kb on + strand, within CA264_00625at 137.639 kb on - strand, within CA264_00625at 137.639 kb on - strand, within CA264_00625at 137.663 kb on + strand, within CA264_00625at 137.663 kb on + strand, within CA264_00625at 137.664 kb on - strand, within CA264_00625at 137.717 kb on - strand, within CA264_00625at 137.783 kb on + strand, within CA264_00625at 137.783 kb on + strand, within CA264_00625at 137.826 kb on + strand, within CA264_00625at 137.826 kb on + strand, within CA264_00625at 137.827 kb on - strand, within CA264_00625at 137.827 kb on - strand, within CA264_00625at 137.883 kb on + strand, within CA264_00625at 137.884 kb on - strand, within CA264_00625at 137.884 kb on - strand, within CA264_00625at 137.884 kb on - strand, within CA264_00625at 137.887 kb on + strand, within CA264_00625at 137.887 kb on + strand, within CA264_00625at 137.888 kb on - strand, within CA264_00625at 137.966 kb on + strand, within CA264_00625at 137.966 kb on + strand, within CA264_00625at 138.034 kb on + strand, within CA264_00625at 138.035 kb on - strand, within CA264_00625at 138.105 kb on + strand, within CA264_00625at 138.105 kb on + strand, within CA264_00625at 138.105 kb on + strand, within CA264_00625at 138.126 kb on + strand, within CA264_00625at 138.127 kb on - strand, within CA264_00625at 138.127 kb on - strand, within CA264_00625at 138.191 kb on - strand, within CA264_00625at 138.274 kb on + strand, within CA264_00625at 138.292 kb on - strand, within CA264_00625at 138.300 kb on + strand, within CA264_00625at 138.322 kb on - strand, within CA264_00625at 138.322 kb on - strand, within CA264_00625at 138.322 kb on - strand, within CA264_00625at 138.578 kb on - strandat 138.678 kb on + strandat 138.679 kb on - strandat 138.700 kb on + strandat 138.701 kb on - strandat 138.701 kb on - strandat 138.705 kb on + strandat 138.705 kb on + strandat 138.733 kb on + strandat 138.734 kb on - strandat 138.740 kb on + strandat 138.744 kb on + strandat 138.745 kb on - strandat 138.745 kb on - strandat 138.799 kb on - strandat 138.799 kb on - strandat 138.799 kb on - strandat 138.833 kb on + strandat 138.857 kb on + strandat 138.857 kb on + strandat 138.857 kb on + strandat 138.858 kb on - strandat 138.858 kb on - strandat 138.858 kb on - strandat 138.858 kb on - strandat 138.864 kb on - strandat 139.083 kb on + strand, within CA264_00630at 139.083 kb on + strand, within CA264_00630at 139.109 kb on + strand, within CA264_00630at 139.110 kb on - strand, within CA264_00630at 139.110 kb on - strand, within CA264_00630at 139.112 kb on - strand, within CA264_00630at 139.112 kb on - strand, within CA264_00630at 139.124 kb on + strand, within CA264_00630at 139.125 kb on - strand, within CA264_00630at 139.125 kb on - strand, within CA264_00630at 139.125 kb on - strand, within CA264_00630at 139.149 kb on + strand, within CA264_00630at 139.149 kb on + strand, within CA264_00630at 139.164 kb on + strand, within CA264_00630at 139.231 kb on + strand, within CA264_00630at 139.231 kb on + strand, within CA264_00630at 139.231 kb on + strand, within CA264_00630at 139.232 kb on - strand, within CA264_00630at 139.401 kb on + strand, within CA264_00630at 139.413 kb on - strand, within CA264_00630at 139.521 kb on - strand, within CA264_00630

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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136,672 + -2.6
136,997 - +0.5
137,014 + -2.3
137,017 - +0.7
137,196 + -0.1
137,196 + +0.3
137,196 + +1.6
137,299 + CA264_00625 0.14 -1.6
137,332 - CA264_00625 0.16 -2.2
137,332 - CA264_00625 0.16 +0.1
137,334 - CA264_00625 0.17 -1.7
137,339 + CA264_00625 0.17 +0.0
137,339 + CA264_00625 0.17 +0.5
137,340 - CA264_00625 0.17 -1.9
137,356 + CA264_00625 0.18 +0.1
137,494 - CA264_00625 0.27 -1.6
137,526 + CA264_00625 0.29 -0.5
137,536 + CA264_00625 0.29 -0.2
137,543 - CA264_00625 0.30 -0.9
137,624 + CA264_00625 0.35 -1.2
137,624 + CA264_00625 0.35 +0.1
137,638 + CA264_00625 0.36 +1.0
137,639 - CA264_00625 0.36 -1.1
137,639 - CA264_00625 0.36 +0.0
137,663 + CA264_00625 0.37 -0.1
137,663 + CA264_00625 0.37 +1.3
137,664 - CA264_00625 0.37 +0.1
137,717 - CA264_00625 0.41 +0.1
137,783 + CA264_00625 0.45 -0.2
137,783 + CA264_00625 0.45 +1.4
137,826 + CA264_00625 0.47 -0.1
137,826 + CA264_00625 0.47 -0.2
137,827 - CA264_00625 0.47 -0.2
137,827 - CA264_00625 0.47 -0.3
137,883 + CA264_00625 0.51 +0.5
137,884 - CA264_00625 0.51 -3.2
137,884 - CA264_00625 0.51 +0.5
137,884 - CA264_00625 0.51 -1.0
137,887 + CA264_00625 0.51 +0.4
137,887 + CA264_00625 0.51 +0.1
137,888 - CA264_00625 0.51 +3.1
137,966 + CA264_00625 0.56 -1.2
137,966 + CA264_00625 0.56 -0.8
138,034 + CA264_00625 0.60 +1.5
138,035 - CA264_00625 0.61 -2.8
138,105 + CA264_00625 0.65 -0.5
138,105 + CA264_00625 0.65 +0.3
138,105 + CA264_00625 0.65 +0.3
138,126 + CA264_00625 0.66 +1.3
138,127 - CA264_00625 0.66 -0.1
138,127 - CA264_00625 0.66 -0.4
138,191 - CA264_00625 0.70 -0.4
138,274 + CA264_00625 0.76 +0.1
138,292 - CA264_00625 0.77 -1.6
138,300 + CA264_00625 0.77 +0.2
138,322 - CA264_00625 0.79 -1.0
138,322 - CA264_00625 0.79 -0.6
138,322 - CA264_00625 0.79 +0.9
138,578 - -1.4
138,678 + +1.2
138,679 - -0.4
138,700 + +1.1
138,701 - +0.6
138,701 - -0.4
138,705 + +0.4
138,705 + +0.1
138,733 + -1.7
138,734 - -0.4
138,740 + -0.5
138,744 + -0.1
138,745 - +0.3
138,745 - +0.7
138,799 - -1.8
138,799 - -1.0
138,799 - -1.5
138,833 + +0.2
138,857 + -1.2
138,857 + +0.7
138,857 + -0.6
138,858 - -1.1
138,858 - +1.9
138,858 - -0.8
138,858 - -0.0
138,864 - -0.7
139,083 + CA264_00630 0.29 +0.1
139,083 + CA264_00630 0.29 -1.0
139,109 + CA264_00630 0.32 -0.2
139,110 - CA264_00630 0.32 -0.4
139,110 - CA264_00630 0.32 +0.7
139,112 - CA264_00630 0.32 -0.6
139,112 - CA264_00630 0.32 +0.7
139,124 + CA264_00630 0.33 +0.9
139,125 - CA264_00630 0.33 +1.1
139,125 - CA264_00630 0.33 +0.8
139,125 - CA264_00630 0.33 -1.1
139,149 + CA264_00630 0.35 +0.8
139,149 + CA264_00630 0.35 -0.1
139,164 + CA264_00630 0.36 +0.1
139,231 + CA264_00630 0.42 +0.3
139,231 + CA264_00630 0.42 +1.5
139,231 + CA264_00630 0.42 +0.6
139,232 - CA264_00630 0.42 -0.3
139,401 + CA264_00630 0.57 +0.3
139,413 - CA264_00630 0.58 +0.2
139,521 - CA264_00630 0.68 +0.7

Or see this region's nucleotide sequence