Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00550

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00540 and CA264_00545 are separated by 215 nucleotidesCA264_00545 and CA264_00550 are separated by 106 nucleotidesCA264_00550 and CA264_00555 are separated by 205 nucleotidesCA264_00555 and CA264_00560 are separated by 170 nucleotidesCA264_00560 and CA264_00565 are separated by 59 nucleotides CA264_00540: CA264_00540 - translational GTPase TypA, at 120,492 to 122,300 _00540 CA264_00545: CA264_00545 - peptide-methionine (R)-S-oxide reductase, at 122,516 to 123,064 _00545 CA264_00550: CA264_00550 - heme oxygenase, at 123,171 to 123,947 _00550 CA264_00555: CA264_00555 - hypothetical protein, at 124,153 to 124,356 _00555 CA264_00560: CA264_00560 - hypothetical protein, at 124,527 to 124,868 _00560 CA264_00565: CA264_00565 - hypothetical protein, at 124,928 to 125,161 _00565 Position (kb) 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 122.353 kb on - strandat 122.512 kb on - strandat 122.516 kb on - strandat 122.643 kb on + strand, within CA264_00545at 122.644 kb on - strand, within CA264_00545at 122.644 kb on - strand, within CA264_00545at 122.644 kb on - strand, within CA264_00545at 122.804 kb on + strand, within CA264_00545at 122.805 kb on - strand, within CA264_00545at 123.072 kb on + strandat 123.093 kb on - strandat 123.141 kb on + strandat 123.143 kb on + strandat 123.151 kb on + strandat 123.151 kb on + strandat 123.151 kb on + strandat 123.151 kb on + strandat 123.151 kb on + strandat 123.151 kb on + strandat 123.152 kb on - strandat 123.152 kb on - strandat 123.184 kb on + strandat 123.314 kb on + strand, within CA264_00550at 123.315 kb on - strand, within CA264_00550at 123.475 kb on - strand, within CA264_00550at 123.475 kb on - strand, within CA264_00550at 123.538 kb on + strand, within CA264_00550at 123.538 kb on + strand, within CA264_00550at 123.665 kb on + strand, within CA264_00550at 123.755 kb on + strand, within CA264_00550at 123.755 kb on + strand, within CA264_00550at 123.755 kb on + strand, within CA264_00550at 123.755 kb on + strand, within CA264_00550at 123.757 kb on + strand, within CA264_00550at 123.757 kb on + strand, within CA264_00550at 123.758 kb on - strand, within CA264_00550at 123.758 kb on - strand, within CA264_00550at 123.758 kb on - strand, within CA264_00550at 123.758 kb on - strand, within CA264_00550at 123.759 kb on + strand, within CA264_00550at 123.762 kb on + strand, within CA264_00550at 123.762 kb on + strand, within CA264_00550at 123.763 kb on - strand, within CA264_00550at 124.006 kb on + strandat 124.007 kb on - strandat 124.077 kb on + strandat 124.093 kb on - strandat 124.125 kb on + strandat 124.126 kb on - strandat 124.126 kb on - strandat 124.130 kb on + strandat 124.130 kb on + strandat 124.131 kb on - strandat 124.131 kb on - strandat 124.201 kb on + strand, within CA264_00555at 124.339 kb on - strandat 124.407 kb on - strandat 124.463 kb on - strandat 124.463 kb on - strandat 124.468 kb on + strandat 124.469 kb on - strandat 124.469 kb on - strandat 124.469 kb on - strandat 124.473 kb on + strandat 124.475 kb on + strandat 124.479 kb on + strandat 124.479 kb on + strandat 124.504 kb on + strandat 124.504 kb on + strandat 124.505 kb on - strandat 124.505 kb on - strandat 124.537 kb on - strandat 124.537 kb on - strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.543 kb on + strandat 124.544 kb on - strandat 124.544 kb on - strandat 124.544 kb on - strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.545 kb on + strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.546 kb on - strandat 124.548 kb on - strandat 124.565 kb on - strand, within CA264_00560at 124.650 kb on + strand, within CA264_00560at 124.821 kb on + strand, within CA264_00560at 124.821 kb on + strand, within CA264_00560at 124.822 kb on - strand, within CA264_00560at 124.822 kb on - strand, within CA264_00560at 124.822 kb on - strand, within CA264_00560at 124.833 kb on + strand, within CA264_00560at 124.834 kb on - strandat 124.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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122,353 - +1.8
122,512 - -0.3
122,516 - -1.8
122,643 + CA264_00545 0.23 -0.7
122,644 - CA264_00545 0.23 +0.8
122,644 - CA264_00545 0.23 -0.6
122,644 - CA264_00545 0.23 -0.8
122,804 + CA264_00545 0.52 -0.1
122,805 - CA264_00545 0.53 -0.2
123,072 + -1.5
123,093 - -0.4
123,141 + -1.4
123,143 + -1.5
123,151 + -1.3
123,151 + -0.7
123,151 + -1.3
123,151 + -2.0
123,151 + -2.1
123,151 + -1.6
123,152 - +0.1
123,152 - +2.9
123,184 + -2.2
123,314 + CA264_00550 0.18 -0.0
123,315 - CA264_00550 0.19 +0.5
123,475 - CA264_00550 0.39 -0.5
123,475 - CA264_00550 0.39 +0.1
123,538 + CA264_00550 0.47 -1.2
123,538 + CA264_00550 0.47 -1.4
123,665 + CA264_00550 0.64 +0.1
123,755 + CA264_00550 0.75 -0.7
123,755 + CA264_00550 0.75 -2.0
123,755 + CA264_00550 0.75 -1.0
123,755 + CA264_00550 0.75 -1.6
123,757 + CA264_00550 0.75 -0.8
123,757 + CA264_00550 0.75 -1.5
123,758 - CA264_00550 0.76 -0.7
123,758 - CA264_00550 0.76 +1.6
123,758 - CA264_00550 0.76 -0.5
123,758 - CA264_00550 0.76 -2.0
123,759 + CA264_00550 0.76 -2.1
123,762 + CA264_00550 0.76 -2.0
123,762 + CA264_00550 0.76 +0.2
123,763 - CA264_00550 0.76 -0.1
124,006 + -1.9
124,007 - -0.7
124,077 + -0.9
124,093 - +0.2
124,125 + -1.6
124,126 - +1.0
124,126 - +0.8
124,130 + -0.9
124,130 + -3.0
124,131 - -0.5
124,131 - +1.2
124,201 + CA264_00555 0.24 -1.2
124,339 - +0.7
124,407 - -0.8
124,463 - -1.2
124,463 - -2.2
124,468 + -0.9
124,469 - +0.1
124,469 - -1.2
124,469 - -2.2
124,473 + -1.8
124,475 + -0.4
124,479 + -0.7
124,479 + +0.4
124,504 + -1.8
124,504 + -1.7
124,505 - -0.8
124,505 - -1.2
124,537 - -1.5
124,537 - -1.0
124,543 + +0.3
124,543 + -0.7
124,543 + -2.4
124,543 + +0.2
124,543 + -1.2
124,543 + -0.9
124,543 + -1.0
124,544 - -0.7
124,544 - -0.5
124,544 - -1.0
124,545 + -1.6
124,545 + -1.3
124,545 + -0.8
124,545 + -1.9
124,545 + -1.3
124,546 - -2.0
124,546 - -1.1
124,546 - -0.9
124,546 - -0.9
124,546 - -0.1
124,546 - -0.7
124,546 - -1.1
124,548 - -1.3
124,565 - CA264_00560 0.11 -1.2
124,650 + CA264_00560 0.36 -2.4
124,821 + CA264_00560 0.86 -1.4
124,821 + CA264_00560 0.86 -0.9
124,822 - CA264_00560 0.86 -0.5
124,822 - CA264_00560 0.86 -1.0
124,822 - CA264_00560 0.86 -1.1
124,833 + CA264_00560 0.89 -0.9
124,834 - +0.6
124,894 - -2.4

Or see this region's nucleotide sequence