Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00190

Experiment: m.b. Thallium(I) acetate 0.0025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00185 and CA264_00190 are separated by 9 nucleotidesCA264_00190 and CA264_00195 are separated by 88 nucleotidesCA264_00195 and CA264_00200 are separated by 41 nucleotides CA264_00185: CA264_00185 - SusC/RagA family TonB-linked outer membrane protein, at 46,172 to 49,366 _00185 CA264_00190: CA264_00190 - RagB/SusD family nutrient uptake outer membrane protein, at 49,376 to 50,896 _00190 CA264_00195: CA264_00195 - ribonuclease HII, at 50,985 to 51,584 _00195 CA264_00200: CA264_00200 - response regulator, at 51,626 to 52,060 _00200 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 48.400 kb on + strand, within CA264_00185at 48.465 kb on - strand, within CA264_00185at 48.550 kb on + strand, within CA264_00185at 48.718 kb on + strand, within CA264_00185at 48.719 kb on - strand, within CA264_00185at 48.719 kb on - strand, within CA264_00185at 48.722 kb on + strand, within CA264_00185at 48.722 kb on + strand, within CA264_00185at 48.723 kb on - strand, within CA264_00185at 48.723 kb on - strand, within CA264_00185at 48.723 kb on - strand, within CA264_00185at 48.728 kb on + strand, within CA264_00185at 48.790 kb on + strand, within CA264_00185at 48.799 kb on - strand, within CA264_00185at 48.799 kb on - strand, within CA264_00185at 48.860 kb on + strand, within CA264_00185at 48.860 kb on + strand, within CA264_00185at 48.860 kb on + strand, within CA264_00185at 48.861 kb on - strand, within CA264_00185at 48.861 kb on - strand, within CA264_00185at 48.861 kb on - strand, within CA264_00185at 48.861 kb on - strand, within CA264_00185at 48.866 kb on + strand, within CA264_00185at 48.916 kb on + strand, within CA264_00185at 48.916 kb on + strand, within CA264_00185at 48.917 kb on - strand, within CA264_00185at 48.917 kb on - strand, within CA264_00185at 48.917 kb on - strand, within CA264_00185at 48.917 kb on - strand, within CA264_00185at 48.917 kb on - strand, within CA264_00185at 48.917 kb on - strand, within CA264_00185at 48.923 kb on - strand, within CA264_00185at 48.943 kb on - strand, within CA264_00185at 48.954 kb on - strand, within CA264_00185at 48.954 kb on - strand, within CA264_00185at 48.961 kb on - strand, within CA264_00185at 48.974 kb on + strand, within CA264_00185at 49.084 kb on + strandat 49.084 kb on + strandat 49.085 kb on - strandat 49.110 kb on - strandat 49.110 kb on - strandat 49.149 kb on - strandat 49.179 kb on - strandat 49.252 kb on - strandat 49.316 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.320 kb on - strandat 49.338 kb on - strandat 49.386 kb on + strandat 49.389 kb on + strandat 49.389 kb on + strandat 49.390 kb on - strandat 49.391 kb on + strandat 49.391 kb on + strandat 49.391 kb on + strandat 49.489 kb on + strandat 49.490 kb on - strandat 49.495 kb on + strandat 49.496 kb on - strandat 49.499 kb on - strandat 49.499 kb on - strandat 49.550 kb on + strand, within CA264_00190at 49.618 kb on - strand, within CA264_00190at 49.618 kb on - strand, within CA264_00190at 49.622 kb on - strand, within CA264_00190at 49.622 kb on - strand, within CA264_00190at 49.658 kb on + strand, within CA264_00190at 49.659 kb on - strand, within CA264_00190at 49.694 kb on - strand, within CA264_00190at 49.718 kb on + strand, within CA264_00190at 49.719 kb on - strand, within CA264_00190at 49.719 kb on - strand, within CA264_00190at 49.719 kb on - strand, within CA264_00190at 49.719 kb on - strand, within CA264_00190at 49.722 kb on - strand, within CA264_00190at 49.723 kb on + strand, within CA264_00190at 49.723 kb on + strand, within CA264_00190at 49.723 kb on + strand, within CA264_00190at 49.724 kb on - strand, within CA264_00190at 49.729 kb on + strand, within CA264_00190at 49.868 kb on + strand, within CA264_00190at 49.889 kb on - strand, within CA264_00190at 49.924 kb on + strand, within CA264_00190at 49.924 kb on + strand, within CA264_00190at 49.925 kb on - strand, within CA264_00190at 49.925 kb on - strand, within CA264_00190at 49.964 kb on + strand, within CA264_00190at 49.965 kb on - strand, within CA264_00190at 49.965 kb on - strand, within CA264_00190at 49.978 kb on + strand, within CA264_00190at 49.978 kb on + strand, within CA264_00190at 50.021 kb on - strand, within CA264_00190at 50.039 kb on - strand, within CA264_00190at 50.099 kb on - strand, within CA264_00190at 50.159 kb on + strand, within CA264_00190at 50.163 kb on + strand, within CA264_00190at 50.163 kb on + strand, within CA264_00190at 50.164 kb on - strand, within CA264_00190at 50.164 kb on - strand, within CA264_00190at 50.164 kb on - strand, within CA264_00190at 50.217 kb on + strand, within CA264_00190at 50.217 kb on + strand, within CA264_00190at 50.218 kb on - strand, within CA264_00190at 50.218 kb on - strand, within CA264_00190at 50.234 kb on + strand, within CA264_00190at 50.247 kb on - strand, within CA264_00190at 50.247 kb on - strand, within CA264_00190at 50.247 kb on - strand, within CA264_00190at 50.255 kb on + strand, within CA264_00190at 50.255 kb on + strand, within CA264_00190at 50.255 kb on + strand, within CA264_00190at 50.273 kb on - strand, within CA264_00190at 50.287 kb on + strand, within CA264_00190at 50.288 kb on - strand, within CA264_00190at 50.321 kb on + strand, within CA264_00190at 50.322 kb on - strand, within CA264_00190at 50.322 kb on - strand, within CA264_00190at 50.350 kb on + strand, within CA264_00190at 50.350 kb on + strand, within CA264_00190at 50.386 kb on - strand, within CA264_00190at 50.430 kb on - strand, within CA264_00190at 50.434 kb on + strand, within CA264_00190at 50.434 kb on + strand, within CA264_00190at 50.434 kb on + strand, within CA264_00190at 50.434 kb on + strand, within CA264_00190at 50.434 kb on + strand, within CA264_00190at 50.434 kb on + strand, within CA264_00190at 50.435 kb on - strand, within CA264_00190at 50.435 kb on - strand, within CA264_00190at 50.435 kb on - strand, within CA264_00190at 50.435 kb on - strand, within CA264_00190at 50.436 kb on + strand, within CA264_00190at 50.436 kb on + strand, within CA264_00190at 50.462 kb on + strand, within CA264_00190at 50.463 kb on - strand, within CA264_00190at 50.463 kb on - strand, within CA264_00190at 50.519 kb on + strand, within CA264_00190at 50.520 kb on - strand, within CA264_00190at 50.598 kb on + strand, within CA264_00190at 50.599 kb on - strand, within CA264_00190at 50.601 kb on + strand, within CA264_00190at 50.641 kb on + strand, within CA264_00190at 50.666 kb on - strand, within CA264_00190at 50.666 kb on - strand, within CA264_00190at 50.753 kb on - strandat 50.753 kb on - strandat 50.753 kb on - strandat 50.894 kb on + strandat 50.894 kb on + strandat 50.894 kb on + strandat 50.894 kb on + strandat 50.898 kb on - strandat 50.970 kb on - strandat 50.971 kb on + strandat 50.972 kb on - strandat 50.972 kb on - strandat 51.010 kb on - strandat 51.010 kb on - strandat 51.082 kb on + strand, within CA264_00195at 51.083 kb on - strand, within CA264_00195at 51.083 kb on - strand, within CA264_00195at 51.083 kb on - strand, within CA264_00195at 51.113 kb on - strand, within CA264_00195at 51.227 kb on + strand, within CA264_00195at 51.228 kb on - strand, within CA264_00195at 51.235 kb on + strand, within CA264_00195at 51.235 kb on + strand, within CA264_00195at 51.235 kb on + strand, within CA264_00195at 51.236 kb on - strand, within CA264_00195at 51.295 kb on - strand, within CA264_00195at 51.373 kb on - strand, within CA264_00195at 51.373 kb on - strand, within CA264_00195at 51.457 kb on - strand, within CA264_00195at 51.694 kb on + strand, within CA264_00200at 51.796 kb on + strand, within CA264_00200at 51.862 kb on + strand, within CA264_00200at 51.863 kb on - strand, within CA264_00200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.0025 mg/ml
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48,400 + CA264_00185 0.70 -0.3
48,465 - CA264_00185 0.72 +1.0
48,550 + CA264_00185 0.74 +0.8
48,718 + CA264_00185 0.80 -0.4
48,719 - CA264_00185 0.80 -0.5
48,719 - CA264_00185 0.80 +0.3
48,722 + CA264_00185 0.80 -0.8
48,722 + CA264_00185 0.80 -0.8
48,723 - CA264_00185 0.80 +0.4
48,723 - CA264_00185 0.80 -0.1
48,723 - CA264_00185 0.80 -0.9
48,728 + CA264_00185 0.80 +0.5
48,790 + CA264_00185 0.82 -0.7
48,799 - CA264_00185 0.82 +0.4
48,799 - CA264_00185 0.82 +0.5
48,860 + CA264_00185 0.84 -1.0
48,860 + CA264_00185 0.84 +0.2
48,860 + CA264_00185 0.84 -0.8
48,861 - CA264_00185 0.84 -1.0
48,861 - CA264_00185 0.84 -0.6
48,861 - CA264_00185 0.84 +0.1
48,861 - CA264_00185 0.84 -0.2
48,866 + CA264_00185 0.84 +0.2
48,916 + CA264_00185 0.86 -0.9
48,916 + CA264_00185 0.86 +0.6
48,917 - CA264_00185 0.86 -0.1
48,917 - CA264_00185 0.86 -0.1
48,917 - CA264_00185 0.86 -0.0
48,917 - CA264_00185 0.86 +0.3
48,917 - CA264_00185 0.86 +0.9
48,917 - CA264_00185 0.86 -0.1
48,923 - CA264_00185 0.86 +0.2
48,943 - CA264_00185 0.87 +0.8
48,954 - CA264_00185 0.87 -0.2
48,954 - CA264_00185 0.87 +0.4
48,961 - CA264_00185 0.87 +1.2
48,974 + CA264_00185 0.88 +0.0
49,084 + -0.7
49,084 + -1.0
49,085 - +0.5
49,110 - +1.3
49,110 - +1.0
49,149 - +0.5
49,179 - +1.2
49,252 - +0.7
49,316 - -0.9
49,320 - +1.5
49,320 - +0.6
49,320 - -1.1
49,320 - -0.4
49,320 - +1.0
49,320 - +1.5
49,320 - +0.5
49,320 - +0.3
49,320 - +0.2
49,320 - +0.2
49,320 - -0.2
49,320 - +0.8
49,320 - +1.7
49,320 - +0.5
49,338 - -0.1
49,386 + -1.7
49,389 + -1.0
49,389 + -1.5
49,390 - +0.1
49,391 + -1.4
49,391 + -1.3
49,391 + -1.4
49,489 + -0.2
49,490 - +0.6
49,495 + -1.0
49,496 - -0.8
49,499 - -0.3
49,499 - +0.6
49,550 + CA264_00190 0.11 -1.0
49,618 - CA264_00190 0.16 +0.5
49,618 - CA264_00190 0.16 -0.0
49,622 - CA264_00190 0.16 +1.0
49,622 - CA264_00190 0.16 +0.7
49,658 + CA264_00190 0.19 -0.4
49,659 - CA264_00190 0.19 +1.4
49,694 - CA264_00190 0.21 -0.8
49,718 + CA264_00190 0.22 +0.9
49,719 - CA264_00190 0.23 -0.9
49,719 - CA264_00190 0.23 -0.3
49,719 - CA264_00190 0.23 +0.1
49,719 - CA264_00190 0.23 -0.1
49,722 - CA264_00190 0.23 +0.0
49,723 + CA264_00190 0.23 -1.6
49,723 + CA264_00190 0.23 -1.2
49,723 + CA264_00190 0.23 -1.5
49,724 - CA264_00190 0.23 -0.1
49,729 + CA264_00190 0.23 +0.2
49,868 + CA264_00190 0.32 -0.9
49,889 - CA264_00190 0.34 +0.8
49,924 + CA264_00190 0.36 -1.6
49,924 + CA264_00190 0.36 +1.1
49,925 - CA264_00190 0.36 +1.5
49,925 - CA264_00190 0.36 -0.7
49,964 + CA264_00190 0.39 -1.3
49,965 - CA264_00190 0.39 +0.5
49,965 - CA264_00190 0.39 -0.5
49,978 + CA264_00190 0.40 -2.0
49,978 + CA264_00190 0.40 -0.8
50,021 - CA264_00190 0.42 +0.6
50,039 - CA264_00190 0.44 -1.6
50,099 - CA264_00190 0.48 +0.9
50,159 + CA264_00190 0.51 -1.4
50,163 + CA264_00190 0.52 -0.2
50,163 + CA264_00190 0.52 -0.0
50,164 - CA264_00190 0.52 +0.5
50,164 - CA264_00190 0.52 -0.2
50,164 - CA264_00190 0.52 +1.2
50,217 + CA264_00190 0.55 -0.4
50,217 + CA264_00190 0.55 -1.3
50,218 - CA264_00190 0.55 +3.1
50,218 - CA264_00190 0.55 +0.0
50,234 + CA264_00190 0.56 +0.2
50,247 - CA264_00190 0.57 -0.2
50,247 - CA264_00190 0.57 +0.8
50,247 - CA264_00190 0.57 -0.4
50,255 + CA264_00190 0.58 -1.0
50,255 + CA264_00190 0.58 -0.4
50,255 + CA264_00190 0.58 -0.6
50,273 - CA264_00190 0.59 -0.1
50,287 + CA264_00190 0.60 +0.1
50,288 - CA264_00190 0.60 +0.6
50,321 + CA264_00190 0.62 +0.3
50,322 - CA264_00190 0.62 +1.2
50,322 - CA264_00190 0.62 +2.8
50,350 + CA264_00190 0.64 -1.7
50,350 + CA264_00190 0.64 -0.1
50,386 - CA264_00190 0.66 -0.4
50,430 - CA264_00190 0.69 +1.4
50,434 + CA264_00190 0.70 -2.2
50,434 + CA264_00190 0.70 -0.8
50,434 + CA264_00190 0.70 -0.2
50,434 + CA264_00190 0.70 -0.0
50,434 + CA264_00190 0.70 -1.5
50,434 + CA264_00190 0.70 -2.4
50,435 - CA264_00190 0.70 +1.8
50,435 - CA264_00190 0.70 +1.1
50,435 - CA264_00190 0.70 +0.7
50,435 - CA264_00190 0.70 -0.5
50,436 + CA264_00190 0.70 -1.1
50,436 + CA264_00190 0.70 -1.5
50,462 + CA264_00190 0.71 -2.2
50,463 - CA264_00190 0.71 +0.1
50,463 - CA264_00190 0.71 +0.2
50,519 + CA264_00190 0.75 -1.5
50,520 - CA264_00190 0.75 +0.7
50,598 + CA264_00190 0.80 -1.6
50,599 - CA264_00190 0.80 +0.3
50,601 + CA264_00190 0.81 -2.3
50,641 + CA264_00190 0.83 -3.2
50,666 - CA264_00190 0.85 -1.7
50,666 - CA264_00190 0.85 -1.5
50,753 - -0.7
50,753 - -0.4
50,753 - +0.8
50,894 + -2.2
50,894 + -2.7
50,894 + -1.0
50,894 + -0.7
50,898 - +0.3
50,970 - -3.0
50,971 + +0.6
50,972 - -0.3
50,972 - -0.4
51,010 - -2.1
51,010 - -0.2
51,082 + CA264_00195 0.16 +0.4
51,083 - CA264_00195 0.16 -0.8
51,083 - CA264_00195 0.16 +0.1
51,083 - CA264_00195 0.16 -1.0
51,113 - CA264_00195 0.21 +0.2
51,227 + CA264_00195 0.40 -0.4
51,228 - CA264_00195 0.41 +1.1
51,235 + CA264_00195 0.42 -0.2
51,235 + CA264_00195 0.42 -0.1
51,235 + CA264_00195 0.42 +0.1
51,236 - CA264_00195 0.42 -1.3
51,295 - CA264_00195 0.52 -0.1
51,373 - CA264_00195 0.65 -2.0
51,373 - CA264_00195 0.65 -2.5
51,457 - CA264_00195 0.79 -2.0
51,694 + CA264_00200 0.16 +0.1
51,796 + CA264_00200 0.39 +1.2
51,862 + CA264_00200 0.54 -0.0
51,863 - CA264_00200 0.54 +0.3

Or see this region's nucleotide sequence