Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0661 and Atu0662 are separated by 112 nucleotides Atu0662 and Atu0663 are separated by 291 nucleotides
Atu0661: Atu0661 - glycosyltransferase, at 655,238 to 656,575
Atu0661
Atu0662: Atu0662 - transcriptional regulator, GntR family, at 656,688 to 657,461
Atu0662
Atu0663: Atu0663 - hypothetical protein, at 657,753 to 659,027
Atu0663
Position (kb) 656
657
658 Strain fitness (log2 ratio) -1
0
1
2 at 655.791 kb on - strand, within Atu0661 at 655.806 kb on + strand, within Atu0661 at 655.813 kb on - strand, within Atu0661 at 655.814 kb on - strand, within Atu0661 at 655.841 kb on + strand, within Atu0661 at 655.847 kb on + strand, within Atu0661 at 655.953 kb on - strand, within Atu0661 at 656.059 kb on + strand, within Atu0661 at 656.084 kb on - strand, within Atu0661 at 656.175 kb on + strand, within Atu0661 at 656.208 kb on + strand, within Atu0661 at 656.232 kb on + strand, within Atu0661 at 656.357 kb on - strand, within Atu0661 at 656.396 kb on - strand, within Atu0661 at 656.426 kb on - strand, within Atu0661 at 656.426 kb on - strand, within Atu0661 at 656.426 kb on - strand, within Atu0661 at 656.501 kb on + strand at 656.577 kb on + strand at 656.739 kb on + strand at 657.004 kb on - strand, within Atu0662 at 657.012 kb on + strand, within Atu0662 at 657.012 kb on + strand, within Atu0662 at 657.044 kb on - strand, within Atu0662 at 657.092 kb on - strand, within Atu0662 at 657.266 kb on - strand, within Atu0662 at 657.285 kb on + strand, within Atu0662 at 657.325 kb on - strand, within Atu0662 at 657.335 kb on + strand, within Atu0662 at 657.429 kb on - strand at 657.469 kb on - strand at 657.621 kb on + strand at 657.631 kb on + strand at 657.745 kb on + strand at 657.813 kb on + strand at 657.819 kb on - strand at 657.976 kb on + strand, within Atu0663 at 658.115 kb on + strand, within Atu0663 at 658.255 kb on + strand, within Atu0663 at 658.279 kb on - strand, within Atu0663 at 658.289 kb on + strand, within Atu0663 at 658.307 kb on - strand, within Atu0663 at 658.338 kb on + strand, within Atu0663 at 658.362 kb on + strand, within Atu0663 at 658.388 kb on - strand, within Atu0663
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 655,791 - Atu0661 0.41 +0.0 655,806 + Atu0661 0.42 +0.3 655,813 - Atu0661 0.43 -0.0 655,814 - Atu0661 0.43 -0.0 655,841 + Atu0661 0.45 -0.2 655,847 + Atu0661 0.46 +0.6 655,953 - Atu0661 0.53 -0.9 656,059 + Atu0661 0.61 +0.0 656,084 - Atu0661 0.63 +0.2 656,175 + Atu0661 0.70 -0.2 656,208 + Atu0661 0.72 +0.1 656,232 + Atu0661 0.74 +0.4 656,357 - Atu0661 0.84 -0.3 656,396 - Atu0661 0.87 +0.5 656,426 - Atu0661 0.89 +0.3 656,426 - Atu0661 0.89 -0.4 656,426 - Atu0661 0.89 +0.5 656,501 + +0.6 656,577 + -0.2 656,739 + +0.2 657,004 - Atu0662 0.41 -0.0 657,012 + Atu0662 0.42 -0.0 657,012 + Atu0662 0.42 +1.5 657,044 - Atu0662 0.46 +2.0 657,092 - Atu0662 0.52 -0.5 657,266 - Atu0662 0.75 +0.9 657,285 + Atu0662 0.77 +0.2 657,325 - Atu0662 0.82 -0.1 657,335 + Atu0662 0.84 -1.6 657,429 - -0.5 657,469 - +0.0 657,621 + +0.1 657,631 + -0.2 657,745 + +0.7 657,813 + +0.7 657,819 - -0.2 657,976 + Atu0663 0.17 -0.0 658,115 + Atu0663 0.28 -0.6 658,255 + Atu0663 0.39 +0.6 658,279 - Atu0663 0.41 -0.0 658,289 + Atu0663 0.42 +0.2 658,307 - Atu0663 0.43 -0.2 658,338 + Atu0663 0.46 -0.8 658,362 + Atu0663 0.48 -0.2 658,388 - Atu0663 0.50 +0.7
Or see this region's nucleotide sequence