Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS24340

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23330 and AMB_RS08850 are separated by 5 nucleotidesAMB_RS08850 and AMB_RS08855 overlap by 4 nucleotidesAMB_RS08855 and AMB_RS08860 are separated by 2 nucleotidesAMB_RS08860 and AMB_RS24340 are separated by 39 nucleotidesAMB_RS24340 and AMB_RS08875 overlap by 4 nucleotidesAMB_RS08875 and AMB_RS08880 are separated by 6 nucleotides AMB_RS23330: AMB_RS23330 - hypothetical protein, at 1,892,802 to 1,893,638 _RS23330 AMB_RS08850: AMB_RS08850 - hypothetical protein, at 1,893,644 to 1,893,922 _RS08850 AMB_RS08855: AMB_RS08855 - hypothetical protein, at 1,893,919 to 1,894,128 _RS08855 AMB_RS08860: AMB_RS08860 - hypothetical protein, at 1,894,131 to 1,894,460 _RS08860 AMB_RS24340: AMB_RS24340 - DNA cytosine methyltransferase, at 1,894,500 to 1,895,732 _RS24340 AMB_RS08875: AMB_RS08875 - regulatory protein GemA, at 1,895,729 to 1,896,361 _RS08875 AMB_RS08880: AMB_RS08880 - hypothetical protein, at 1,896,368 to 1,896,868 _RS08880 Position (kb) 1894 1895 1896Strain fitness (log2 ratio) -1 0 1at 1893.636 kb on + strandat 1893.637 kb on - strandat 1894.027 kb on + strand, within AMB_RS08855at 1894.027 kb on + strand, within AMB_RS08855at 1894.027 kb on + strand, within AMB_RS08855at 1894.027 kb on + strand, within AMB_RS08855at 1894.028 kb on - strand, within AMB_RS08855at 1894.028 kb on - strand, within AMB_RS08855at 1894.028 kb on - strand, within AMB_RS08855at 1894.028 kb on - strand, within AMB_RS08855at 1894.052 kb on - strand, within AMB_RS08855at 1894.187 kb on + strand, within AMB_RS08860at 1894.519 kb on + strandat 1894.519 kb on + strandat 1894.519 kb on + strandat 1894.520 kb on - strandat 1894.520 kb on - strandat 1894.867 kb on + strand, within AMB_RS24340at 1894.867 kb on + strand, within AMB_RS24340at 1894.867 kb on + strand, within AMB_RS24340at 1894.867 kb on + strand, within AMB_RS24340at 1894.867 kb on + strand, within AMB_RS24340at 1894.867 kb on + strand, within AMB_RS24340at 1894.868 kb on - strand, within AMB_RS24340at 1895.354 kb on + strand, within AMB_RS24340at 1895.354 kb on + strand, within AMB_RS24340at 1895.355 kb on - strand, within AMB_RS24340

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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1,893,636 + -0.2
1,893,637 - -0.3
1,894,027 + AMB_RS08855 0.51 -0.7
1,894,027 + AMB_RS08855 0.51 +0.6
1,894,027 + AMB_RS08855 0.51 -0.3
1,894,027 + AMB_RS08855 0.51 +0.7
1,894,028 - AMB_RS08855 0.52 +0.3
1,894,028 - AMB_RS08855 0.52 +0.2
1,894,028 - AMB_RS08855 0.52 +0.5
1,894,028 - AMB_RS08855 0.52 -0.1
1,894,052 - AMB_RS08855 0.63 -0.7
1,894,187 + AMB_RS08860 0.17 +0.2
1,894,519 + +0.1
1,894,519 + -0.9
1,894,519 + -0.6
1,894,520 - +0.1
1,894,520 - -0.1
1,894,867 + AMB_RS24340 0.30 -0.8
1,894,867 + AMB_RS24340 0.30 -0.1
1,894,867 + AMB_RS24340 0.30 -0.2
1,894,867 + AMB_RS24340 0.30 -1.2
1,894,867 + AMB_RS24340 0.30 -0.4
1,894,867 + AMB_RS24340 0.30 +0.2
1,894,868 - AMB_RS24340 0.30 -1.5
1,895,354 + AMB_RS24340 0.69 +0.0
1,895,354 + AMB_RS24340 0.69 -0.8
1,895,355 - AMB_RS24340 0.69 -0.0

Or see this region's nucleotide sequence