Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23300

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07565 and AMB_RS07570 overlap by 1 nucleotidesAMB_RS07570 and AMB_RS07575 overlap by 4 nucleotidesAMB_RS07575 and AMB_RS23300 overlap by 4 nucleotidesAMB_RS23300 and AMB_RS07585 are separated by 119 nucleotides AMB_RS07565: AMB_RS07565 - single-stranded DNA-binding protein, at 1,636,204 to 1,636,785 _RS07565 AMB_RS07570: AMB_RS07570 - hypothetical protein, at 1,636,785 to 1,637,390 _RS07570 AMB_RS07575: AMB_RS07575 - hypothetical protein, at 1,637,387 to 1,637,692 _RS07575 AMB_RS23300: AMB_RS23300 - transcriptional regulator, at 1,637,689 to 1,639,923 _RS23300 AMB_RS07585: AMB_RS07585 - hypothetical protein, at 1,640,043 to 1,640,663 _RS07585 Position (kb) 1637 1638 1639 1640Strain fitness (log2 ratio) -2 -1 0 1 2at 1636.786 kb on + strandat 1636.787 kb on - strandat 1637.008 kb on + strand, within AMB_RS07570at 1637.008 kb on + strand, within AMB_RS07570at 1637.008 kb on + strand, within AMB_RS07570at 1637.643 kb on + strand, within AMB_RS07575at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.068 kb on + strand, within AMB_RS23300at 1638.069 kb on - strand, within AMB_RS23300at 1638.069 kb on - strand, within AMB_RS23300at 1638.069 kb on - strand, within AMB_RS23300at 1638.114 kb on + strand, within AMB_RS23300at 1638.115 kb on - strand, within AMB_RS23300at 1638.299 kb on + strand, within AMB_RS23300at 1638.300 kb on - strand, within AMB_RS23300at 1638.300 kb on - strand, within AMB_RS23300at 1638.300 kb on - strand, within AMB_RS23300at 1638.485 kb on + strand, within AMB_RS23300at 1638.485 kb on + strand, within AMB_RS23300at 1638.485 kb on + strand, within AMB_RS23300at 1638.486 kb on - strand, within AMB_RS23300at 1638.672 kb on - strand, within AMB_RS23300at 1638.672 kb on - strand, within AMB_RS23300at 1638.672 kb on - strand, within AMB_RS23300at 1638.672 kb on - strand, within AMB_RS23300at 1638.813 kb on - strand, within AMB_RS23300at 1638.869 kb on + strand, within AMB_RS23300at 1638.869 kb on + strand, within AMB_RS23300at 1638.870 kb on - strand, within AMB_RS23300at 1638.870 kb on - strand, within AMB_RS23300at 1638.911 kb on + strand, within AMB_RS23300at 1638.912 kb on - strand, within AMB_RS23300at 1638.912 kb on - strand, within AMB_RS23300at 1638.974 kb on - strand, within AMB_RS23300at 1639.037 kb on + strand, within AMB_RS23300at 1639.091 kb on + strand, within AMB_RS23300at 1639.091 kb on + strand, within AMB_RS23300at 1639.132 kb on + strand, within AMB_RS23300at 1639.374 kb on + strand, within AMB_RS23300at 1639.374 kb on + strand, within AMB_RS23300at 1639.375 kb on - strand, within AMB_RS23300at 1639.375 kb on - strand, within AMB_RS23300at 1639.375 kb on - strand, within AMB_RS23300at 1639.375 kb on - strand, within AMB_RS23300at 1639.462 kb on - strand, within AMB_RS23300at 1639.580 kb on + strand, within AMB_RS23300at 1639.793 kb on + strandat 1639.794 kb on - strandat 1639.794 kb on - strandat 1639.880 kb on + strandat 1639.881 kb on - strandat 1640.428 kb on + strand, within AMB_RS07585at 1640.428 kb on + strand, within AMB_RS07585at 1640.428 kb on + strand, within AMB_RS07585at 1640.429 kb on - strand, within AMB_RS07585at 1640.429 kb on - strand, within AMB_RS07585

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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1,636,786 + -0.3
1,636,787 - -2.4
1,637,008 + AMB_RS07570 0.37 +0.0
1,637,008 + AMB_RS07570 0.37 -1.0
1,637,008 + AMB_RS07570 0.37 +0.0
1,637,643 + AMB_RS07575 0.84 +0.5
1,638,068 + AMB_RS23300 0.17 -0.3
1,638,068 + AMB_RS23300 0.17 -0.1
1,638,068 + AMB_RS23300 0.17 +0.2
1,638,068 + AMB_RS23300 0.17 +1.3
1,638,068 + AMB_RS23300 0.17 -0.1
1,638,068 + AMB_RS23300 0.17 +0.2
1,638,068 + AMB_RS23300 0.17 +0.4
1,638,068 + AMB_RS23300 0.17 -0.2
1,638,068 + AMB_RS23300 0.17 +0.1
1,638,068 + AMB_RS23300 0.17 +0.4
1,638,068 + AMB_RS23300 0.17 -0.1
1,638,068 + AMB_RS23300 0.17 -0.2
1,638,069 - AMB_RS23300 0.17 -0.2
1,638,069 - AMB_RS23300 0.17 +0.1
1,638,069 - AMB_RS23300 0.17 -1.4
1,638,114 + AMB_RS23300 0.19 -0.5
1,638,115 - AMB_RS23300 0.19 -1.0
1,638,299 + AMB_RS23300 0.27 -0.3
1,638,300 - AMB_RS23300 0.27 -0.4
1,638,300 - AMB_RS23300 0.27 +0.4
1,638,300 - AMB_RS23300 0.27 -0.5
1,638,485 + AMB_RS23300 0.36 -0.6
1,638,485 + AMB_RS23300 0.36 +0.2
1,638,485 + AMB_RS23300 0.36 -1.9
1,638,486 - AMB_RS23300 0.36 +1.9
1,638,672 - AMB_RS23300 0.44 -0.4
1,638,672 - AMB_RS23300 0.44 +0.6
1,638,672 - AMB_RS23300 0.44 -0.2
1,638,672 - AMB_RS23300 0.44 -1.2
1,638,813 - AMB_RS23300 0.50 +0.5
1,638,869 + AMB_RS23300 0.53 -1.1
1,638,869 + AMB_RS23300 0.53 -0.3
1,638,870 - AMB_RS23300 0.53 -1.3
1,638,870 - AMB_RS23300 0.53 +0.5
1,638,911 + AMB_RS23300 0.55 -0.4
1,638,912 - AMB_RS23300 0.55 -1.8
1,638,912 - AMB_RS23300 0.55 +0.2
1,638,974 - AMB_RS23300 0.57 -0.5
1,639,037 + AMB_RS23300 0.60 +0.8
1,639,091 + AMB_RS23300 0.63 +0.8
1,639,091 + AMB_RS23300 0.63 +0.3
1,639,132 + AMB_RS23300 0.65 +0.5
1,639,374 + AMB_RS23300 0.75 -0.9
1,639,374 + AMB_RS23300 0.75 -1.6
1,639,375 - AMB_RS23300 0.75 -0.8
1,639,375 - AMB_RS23300 0.75 +0.5
1,639,375 - AMB_RS23300 0.75 +0.7
1,639,375 - AMB_RS23300 0.75 +0.1
1,639,462 - AMB_RS23300 0.79 +0.5
1,639,580 + AMB_RS23300 0.85 +0.4
1,639,793 + -0.2
1,639,794 - -0.6
1,639,794 - +0.0
1,639,880 + -0.1
1,639,881 - -0.2
1,640,428 + AMB_RS07585 0.62 -0.9
1,640,428 + AMB_RS07585 0.62 +0.4
1,640,428 + AMB_RS07585 0.62 -0.3
1,640,429 - AMB_RS07585 0.62 -0.4
1,640,429 - AMB_RS07585 0.62 +0.2

Or see this region's nucleotide sequence