Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22835

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22825 and AMB_RS22830 are separated by 15 nucleotidesAMB_RS22830 and AMB_RS22835 are separated by 106 nucleotidesAMB_RS22835 and AMB_RS22840 are separated by 142 nucleotidesAMB_RS22840 and AMB_RS22845 are separated by 72 nucleotides AMB_RS22825: AMB_RS22825 - tape measure domain-containing protein, at 4,925,199 to 4,929,788 _RS22825 AMB_RS22830: AMB_RS22830 - hypothetical protein, at 4,929,804 to 4,930,037 _RS22830 AMB_RS22835: AMB_RS22835 - hypothetical protein, at 4,930,144 to 4,930,437 _RS22835 AMB_RS22840: AMB_RS22840 - resolvase, at 4,930,580 to 4,931,245 _RS22840 AMB_RS22845: AMB_RS22845 - hypothetical protein, at 4,931,318 to 4,931,506 _RS22845 Position (kb) 4930 4931Strain fitness (log2 ratio) -2 -1 0 1 2at 4929.411 kb on + strandat 4929.412 kb on - strandat 4929.412 kb on - strandat 4929.491 kb on + strandat 4929.491 kb on + strandat 4929.492 kb on - strandat 4929.513 kb on + strandat 4929.514 kb on - strandat 4929.514 kb on - strandat 4929.514 kb on - strandat 4929.536 kb on + strandat 4929.597 kb on - strandat 4929.695 kb on + strandat 4929.695 kb on + strandat 4929.696 kb on - strandat 4929.696 kb on - strandat 4929.696 kb on - strandat 4929.789 kb on + strandat 4929.811 kb on + strandat 4929.811 kb on + strandat 4929.811 kb on + strandat 4929.934 kb on + strand, within AMB_RS22830at 4929.934 kb on + strand, within AMB_RS22830at 4929.935 kb on - strand, within AMB_RS22830at 4929.935 kb on - strand, within AMB_RS22830at 4929.935 kb on - strand, within AMB_RS22830at 4929.953 kb on + strand, within AMB_RS22830at 4929.953 kb on + strand, within AMB_RS22830at 4929.954 kb on - strand, within AMB_RS22830at 4929.954 kb on - strand, within AMB_RS22830at 4929.986 kb on - strand, within AMB_RS22830at 4930.076 kb on + strandat 4930.076 kb on + strandat 4930.076 kb on + strandat 4930.077 kb on - strandat 4930.077 kb on - strandat 4930.077 kb on - strandat 4930.077 kb on - strandat 4930.077 kb on - strandat 4930.100 kb on - strandat 4930.104 kb on - strandat 4930.104 kb on - strandat 4930.178 kb on + strand, within AMB_RS22835at 4930.178 kb on + strand, within AMB_RS22835at 4930.178 kb on + strand, within AMB_RS22835at 4930.178 kb on + strand, within AMB_RS22835at 4930.179 kb on - strand, within AMB_RS22835at 4930.179 kb on - strand, within AMB_RS22835at 4930.179 kb on - strand, within AMB_RS22835at 4930.179 kb on - strand, within AMB_RS22835at 4930.179 kb on - strand, within AMB_RS22835at 4930.179 kb on - strand, within AMB_RS22835at 4930.179 kb on - strand, within AMB_RS22835at 4930.179 kb on - strand, within AMB_RS22835at 4930.182 kb on + strand, within AMB_RS22835at 4930.182 kb on + strand, within AMB_RS22835at 4930.182 kb on + strand, within AMB_RS22835at 4930.182 kb on + strand, within AMB_RS22835at 4930.182 kb on + strand, within AMB_RS22835at 4930.183 kb on - strand, within AMB_RS22835at 4930.183 kb on - strand, within AMB_RS22835at 4930.262 kb on + strand, within AMB_RS22835at 4930.263 kb on - strand, within AMB_RS22835at 4930.271 kb on + strand, within AMB_RS22835at 4930.271 kb on + strand, within AMB_RS22835at 4930.271 kb on + strand, within AMB_RS22835at 4930.271 kb on + strand, within AMB_RS22835at 4930.272 kb on - strand, within AMB_RS22835at 4930.272 kb on - strand, within AMB_RS22835at 4930.272 kb on - strand, within AMB_RS22835at 4930.272 kb on - strand, within AMB_RS22835at 4930.428 kb on - strandat 4930.560 kb on + strandat 4930.679 kb on + strand, within AMB_RS22840at 4930.715 kb on + strand, within AMB_RS22840at 4930.715 kb on + strand, within AMB_RS22840at 4930.716 kb on - strand, within AMB_RS22840at 4930.716 kb on - strand, within AMB_RS22840at 4930.716 kb on - strand, within AMB_RS22840at 4931.036 kb on + strand, within AMB_RS22840at 4931.036 kb on + strand, within AMB_RS22840at 4931.036 kb on + strand, within AMB_RS22840at 4931.037 kb on - strand, within AMB_RS22840at 4931.136 kb on - strand, within AMB_RS22840at 4931.136 kb on - strand, within AMB_RS22840at 4931.243 kb on + strandat 4931.244 kb on - strandat 4931.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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4,929,411 + -0.7
4,929,412 - -0.7
4,929,412 - +0.3
4,929,491 + +0.1
4,929,491 + -1.0
4,929,492 - +0.3
4,929,513 + -0.0
4,929,514 - +0.3
4,929,514 - -0.5
4,929,514 - +0.8
4,929,536 + -0.7
4,929,597 - -0.3
4,929,695 + -0.4
4,929,695 + +0.9
4,929,696 - +0.0
4,929,696 - -0.5
4,929,696 - -0.2
4,929,789 + -2.4
4,929,811 + +0.3
4,929,811 + -1.3
4,929,811 + -0.6
4,929,934 + AMB_RS22830 0.56 -0.9
4,929,934 + AMB_RS22830 0.56 -0.4
4,929,935 - AMB_RS22830 0.56 +0.0
4,929,935 - AMB_RS22830 0.56 -0.3
4,929,935 - AMB_RS22830 0.56 +0.2
4,929,953 + AMB_RS22830 0.64 -0.6
4,929,953 + AMB_RS22830 0.64 -0.2
4,929,954 - AMB_RS22830 0.64 -2.0
4,929,954 - AMB_RS22830 0.64 -0.2
4,929,986 - AMB_RS22830 0.78 +0.3
4,930,076 + -0.9
4,930,076 + -0.1
4,930,076 + -0.2
4,930,077 - +1.9
4,930,077 - -0.7
4,930,077 - -1.2
4,930,077 - -0.4
4,930,077 - +0.4
4,930,100 - +0.7
4,930,104 - -0.9
4,930,104 - +0.2
4,930,178 + AMB_RS22835 0.12 -0.3
4,930,178 + AMB_RS22835 0.12 +0.2
4,930,178 + AMB_RS22835 0.12 +0.1
4,930,178 + AMB_RS22835 0.12 +0.4
4,930,179 - AMB_RS22835 0.12 -0.8
4,930,179 - AMB_RS22835 0.12 +0.3
4,930,179 - AMB_RS22835 0.12 -0.6
4,930,179 - AMB_RS22835 0.12 +0.3
4,930,179 - AMB_RS22835 0.12 -0.4
4,930,179 - AMB_RS22835 0.12 +0.5
4,930,179 - AMB_RS22835 0.12 -0.7
4,930,179 - AMB_RS22835 0.12 -0.7
4,930,182 + AMB_RS22835 0.13 +0.2
4,930,182 + AMB_RS22835 0.13 -0.2
4,930,182 + AMB_RS22835 0.13 -0.1
4,930,182 + AMB_RS22835 0.13 +1.3
4,930,182 + AMB_RS22835 0.13 -0.0
4,930,183 - AMB_RS22835 0.13 +0.1
4,930,183 - AMB_RS22835 0.13 +0.3
4,930,262 + AMB_RS22835 0.40 -0.1
4,930,263 - AMB_RS22835 0.40 -0.1
4,930,271 + AMB_RS22835 0.43 -0.5
4,930,271 + AMB_RS22835 0.43 +0.4
4,930,271 + AMB_RS22835 0.43 -0.6
4,930,271 + AMB_RS22835 0.43 +0.2
4,930,272 - AMB_RS22835 0.44 -0.2
4,930,272 - AMB_RS22835 0.44 -0.4
4,930,272 - AMB_RS22835 0.44 -0.3
4,930,272 - AMB_RS22835 0.44 +0.4
4,930,428 - +0.4
4,930,560 + -0.1
4,930,679 + AMB_RS22840 0.15 +0.3
4,930,715 + AMB_RS22840 0.20 -0.2
4,930,715 + AMB_RS22840 0.20 -0.2
4,930,716 - AMB_RS22840 0.20 -2.5
4,930,716 - AMB_RS22840 0.20 -0.3
4,930,716 - AMB_RS22840 0.20 -0.3
4,931,036 + AMB_RS22840 0.68 -1.6
4,931,036 + AMB_RS22840 0.68 -0.6
4,931,036 + AMB_RS22840 0.68 -0.3
4,931,037 - AMB_RS22840 0.69 -0.9
4,931,136 - AMB_RS22840 0.83 -1.3
4,931,136 - AMB_RS22840 0.83 +0.4
4,931,243 + +0.1
4,931,244 - -1.0
4,931,244 - +0.9

Or see this region's nucleotide sequence