Experiment: 150_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS18960 and AMB_RS18965 are separated by 132 nucleotides AMB_RS18965 and AMB_RS18970 are separated by 189 nucleotides
AMB_RS18960: AMB_RS18960 - type II secretion system F family protein, at 4,121,847 to 4,122,806
_RS18960
AMB_RS18965: AMB_RS18965 - hypothetical protein, at 4,122,939 to 4,123,259
_RS18965
AMB_RS18970: AMB_RS18970 - tetratricopeptide repeat protein, at 4,123,449 to 4,124,252
_RS18970
Position (kb) 4122
4123
4124 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4122.229 kb on - strand, within AMB_RS18960 at 4122.229 kb on - strand, within AMB_RS18960 at 4122.229 kb on - strand, within AMB_RS18960 at 4122.317 kb on + strand, within AMB_RS18960 at 4122.318 kb on - strand, within AMB_RS18960 at 4122.612 kb on + strand, within AMB_RS18960 at 4122.612 kb on + strand, within AMB_RS18960 at 4122.613 kb on - strand, within AMB_RS18960 at 4122.613 kb on - strand, within AMB_RS18960 at 4122.804 kb on + strand at 4122.804 kb on + strand at 4122.804 kb on + strand at 4122.804 kb on + strand at 4122.804 kb on + strand at 4122.804 kb on + strand at 4122.805 kb on - strand at 4122.805 kb on - strand at 4122.805 kb on - strand at 4122.805 kb on - strand at 4122.805 kb on - strand at 4122.807 kb on + strand at 4122.808 kb on - strand at 4122.846 kb on - strand at 4122.868 kb on + strand at 4122.869 kb on - strand at 4122.954 kb on + strand at 4122.954 kb on + strand at 4122.955 kb on - strand at 4122.955 kb on - strand at 4122.955 kb on - strand at 4122.955 kb on - strand at 4122.955 kb on - strand at 4122.955 kb on - strand at 4122.976 kb on + strand, within AMB_RS18965 at 4122.976 kb on + strand, within AMB_RS18965 at 4122.976 kb on + strand, within AMB_RS18965 at 4122.976 kb on + strand, within AMB_RS18965 at 4122.976 kb on + strand, within AMB_RS18965 at 4122.977 kb on - strand, within AMB_RS18965 at 4122.977 kb on - strand, within AMB_RS18965 at 4122.977 kb on - strand, within AMB_RS18965 at 4122.977 kb on - strand, within AMB_RS18965 at 4122.977 kb on - strand, within AMB_RS18965 at 4122.977 kb on - strand, within AMB_RS18965 at 4123.156 kb on + strand, within AMB_RS18965 at 4123.252 kb on + strand at 4123.253 kb on - strand at 4123.344 kb on - strand at 4123.344 kb on - strand at 4123.360 kb on + strand at 4123.873 kb on + strand, within AMB_RS18970 at 4123.873 kb on + strand, within AMB_RS18970 at 4123.873 kb on + strand, within AMB_RS18970 at 4123.873 kb on + strand, within AMB_RS18970 at 4123.873 kb on + strand, within AMB_RS18970 at 4123.873 kb on + strand, within AMB_RS18970 at 4123.873 kb on + strand, within AMB_RS18970 at 4123.873 kb on + strand, within AMB_RS18970 at 4123.970 kb on - strand, within AMB_RS18970 at 4123.970 kb on - strand, within AMB_RS18970 at 4124.026 kb on + strand, within AMB_RS18970 at 4124.026 kb on + strand, within AMB_RS18970 at 4124.026 kb on + strand, within AMB_RS18970 at 4124.026 kb on + strand, within AMB_RS18970
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_3 remove 4,122,229 - AMB_RS18960 0.40 -0.0 4,122,229 - AMB_RS18960 0.40 +0.4 4,122,229 - AMB_RS18960 0.40 +0.2 4,122,317 + AMB_RS18960 0.49 +0.1 4,122,318 - AMB_RS18960 0.49 -0.0 4,122,612 + AMB_RS18960 0.80 -0.8 4,122,612 + AMB_RS18960 0.80 -0.5 4,122,613 - AMB_RS18960 0.80 +0.4 4,122,613 - AMB_RS18960 0.80 -0.2 4,122,804 + -0.1 4,122,804 + -0.3 4,122,804 + -1.4 4,122,804 + -2.9 4,122,804 + -1.9 4,122,804 + +0.0 4,122,805 - -0.1 4,122,805 - -0.2 4,122,805 - -0.2 4,122,805 - +0.1 4,122,805 - +1.8 4,122,807 + -0.0 4,122,808 - -0.4 4,122,846 - -0.3 4,122,868 + -0.1 4,122,869 - -0.1 4,122,954 + -0.1 4,122,954 + -0.0 4,122,955 - +0.1 4,122,955 - -0.2 4,122,955 - -2.5 4,122,955 - -0.4 4,122,955 - -0.4 4,122,955 - -0.5 4,122,976 + AMB_RS18965 0.12 -0.5 4,122,976 + AMB_RS18965 0.12 +0.2 4,122,976 + AMB_RS18965 0.12 -2.3 4,122,976 + AMB_RS18965 0.12 -1.5 4,122,976 + AMB_RS18965 0.12 +0.8 4,122,977 - AMB_RS18965 0.12 -0.4 4,122,977 - AMB_RS18965 0.12 -0.3 4,122,977 - AMB_RS18965 0.12 +0.8 4,122,977 - AMB_RS18965 0.12 +0.5 4,122,977 - AMB_RS18965 0.12 +0.4 4,122,977 - AMB_RS18965 0.12 +0.4 4,123,156 + AMB_RS18965 0.68 -0.2 4,123,252 + -1.4 4,123,253 - -0.7 4,123,344 - -0.5 4,123,344 - -0.1 4,123,360 + +0.7 4,123,873 + AMB_RS18970 0.53 -0.9 4,123,873 + AMB_RS18970 0.53 +0.2 4,123,873 + AMB_RS18970 0.53 +0.8 4,123,873 + AMB_RS18970 0.53 -0.3 4,123,873 + AMB_RS18970 0.53 -1.3 4,123,873 + AMB_RS18970 0.53 -1.5 4,123,873 + AMB_RS18970 0.53 -0.3 4,123,873 + AMB_RS18970 0.53 -0.7 4,123,970 - AMB_RS18970 0.65 -0.2 4,123,970 - AMB_RS18970 0.65 -0.1 4,124,026 + AMB_RS18970 0.72 -0.1 4,124,026 + AMB_RS18970 0.72 -0.8 4,124,026 + AMB_RS18970 0.72 -0.4 4,124,026 + AMB_RS18970 0.72 -0.3
Or see this region's nucleotide sequence