Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS17650

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS17645 and AMB_RS17650 are separated by 240 nucleotidesAMB_RS17650 and AMB_RS17655 overlap by 4 nucleotidesAMB_RS17655 and AMB_RS17660 overlap by 4 nucleotides AMB_RS17645: AMB_RS17645 - iron-sulfur cluster carrier protein ApbC, at 3,833,981 to 3,835,093 _RS17645 AMB_RS17650: AMB_RS17650 - FtsH protease activity modulator HflK, at 3,835,334 to 3,836,467 _RS17650 AMB_RS17655: AMB_RS17655 - protease modulator HflC, at 3,836,464 to 3,837,342 _RS17655 AMB_RS17660: AMB_RS17660 - DUF2065 domain-containing protein, at 3,837,339 to 3,837,539 _RS17660 Position (kb) 3835 3836 3837Strain fitness (log2 ratio) -2 -1 0 1at 3834.561 kb on + strand, within AMB_RS17645at 3834.561 kb on + strand, within AMB_RS17645at 3834.561 kb on + strand, within AMB_RS17645at 3834.561 kb on + strand, within AMB_RS17645at 3834.562 kb on - strand, within AMB_RS17645at 3834.562 kb on - strand, within AMB_RS17645at 3835.167 kb on + strandat 3835.170 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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3,834,561 + AMB_RS17645 0.52 -0.8
3,834,561 + AMB_RS17645 0.52 -1.8
3,834,561 + AMB_RS17645 0.52 -0.9
3,834,561 + AMB_RS17645 0.52 -1.7
3,834,562 - AMB_RS17645 0.52 -1.3
3,834,562 - AMB_RS17645 0.52 -1.8
3,835,167 + -0.3
3,835,170 - +0.2

Or see this region's nucleotide sequence