Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16765

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS24615 and AMB_RS16765 are separated by 62 nucleotidesAMB_RS16765 and AMB_RS16770 overlap by 4 nucleotidesAMB_RS16770 and AMB_RS16775 are separated by 87 nucleotides AMB_RS24615: AMB_RS24615 - IS3 family transposase, at 3,600,238 to 3,600,761 _RS24615 AMB_RS16765: AMB_RS16765 - IS66 family insertion sequence hypothetical protein, at 3,600,824 to 3,601,198 _RS16765 AMB_RS16770: AMB_RS16770 - IS66 family insertion sequence hypothetical protein, at 3,601,195 to 3,601,542 _RS16770 AMB_RS16775: AMB_RS16775 - IS66 family transposase, at 3,601,630 to 3,603,177 _RS16775 Position (kb) 3600 3601 3602Strain fitness (log2 ratio) -1 0 1at 3599.859 kb on + strandat 3599.964 kb on + strandat 3599.964 kb on + strandat 3599.965 kb on - strandat 3599.968 kb on - strandat 3600.101 kb on - strandat 3600.134 kb on + strandat 3600.134 kb on - strandat 3600.339 kb on + strand, within AMB_RS24615at 3600.352 kb on + strand, within AMB_RS24615at 3600.352 kb on + strand, within AMB_RS24615at 3600.353 kb on - strand, within AMB_RS24615at 3600.435 kb on - strand, within AMB_RS24615at 3600.499 kb on + strand, within AMB_RS24615at 3600.500 kb on - strand, within AMB_RS24615at 3600.708 kb on + strand, within AMB_RS24615at 3600.764 kb on - strandat 3602.095 kb on + strand, within AMB_RS16775

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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3,599,859 + -0.2
3,599,964 + -0.3
3,599,964 + -0.2
3,599,965 - -0.6
3,599,968 - -0.2
3,600,101 - -0.1
3,600,134 + -0.4
3,600,134 - -0.1
3,600,339 + AMB_RS24615 0.19 -0.4
3,600,352 + AMB_RS24615 0.22 -0.3
3,600,352 + AMB_RS24615 0.22 +0.7
3,600,353 - AMB_RS24615 0.22 +1.0
3,600,435 - AMB_RS24615 0.38 +0.3
3,600,499 + AMB_RS24615 0.50 +0.2
3,600,500 - AMB_RS24615 0.50 +0.4
3,600,708 + AMB_RS24615 0.90 -0.6
3,600,764 - -0.4
3,602,095 + AMB_RS16775 0.30 -0.6

Or see this region's nucleotide sequence