Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15475

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS15470 and AMB_RS15475 overlap by 11 nucleotidesAMB_RS15475 and AMB_RS15480 overlap by 4 nucleotidesAMB_RS15480 and AMB_RS15485 overlap by 4 nucleotides AMB_RS15470: AMB_RS15470 - oxidoreductase, at 3,322,859 to 3,323,854 _RS15470 AMB_RS15475: AMB_RS15475 - bile acid:sodium symporter family protein, at 3,323,844 to 3,324,704 _RS15475 AMB_RS15480: AMB_RS15480 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 3,324,701 to 3,325,644 _RS15480 AMB_RS15485: AMB_RS15485 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 3,325,641 to 3,326,372 _RS15485 Position (kb) 3323 3324 3325Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3322.973 kb on + strand, within AMB_RS15470at 3322.973 kb on + strand, within AMB_RS15470at 3322.973 kb on + strand, within AMB_RS15470at 3322.989 kb on - strand, within AMB_RS15470at 3323.036 kb on + strand, within AMB_RS15470at 3323.037 kb on - strand, within AMB_RS15470at 3323.159 kb on + strand, within AMB_RS15470at 3323.159 kb on + strand, within AMB_RS15470at 3323.160 kb on - strand, within AMB_RS15470at 3323.426 kb on + strand, within AMB_RS15470at 3323.427 kb on - strand, within AMB_RS15470at 3324.189 kb on - strand, within AMB_RS15475at 3324.916 kb on - strand, within AMB_RS15480at 3324.996 kb on - strand, within AMB_RS15480at 3324.999 kb on + strand, within AMB_RS15480at 3324.999 kb on + strand, within AMB_RS15480at 3325.085 kb on + strand, within AMB_RS15480at 3325.085 kb on + strand, within AMB_RS15480at 3325.085 kb on + strand, within AMB_RS15480at 3325.086 kb on - strand, within AMB_RS15480at 3325.086 kb on - strand, within AMB_RS15480at 3325.088 kb on + strand, within AMB_RS15480at 3325.088 kb on + strand, within AMB_RS15480at 3325.088 kb on + strand, within AMB_RS15480at 3325.088 kb on + strand, within AMB_RS15480at 3325.088 kb on + strand, within AMB_RS15480at 3325.088 kb on + strand, within AMB_RS15480at 3325.088 kb on + strand, within AMB_RS15480at 3325.089 kb on - strand, within AMB_RS15480at 3325.089 kb on - strand, within AMB_RS15480at 3325.089 kb on - strand, within AMB_RS15480at 3325.089 kb on - strand, within AMB_RS15480at 3325.089 kb on - strand, within AMB_RS15480at 3325.089 kb on - strand, within AMB_RS15480at 3325.149 kb on + strand, within AMB_RS15480at 3325.149 kb on + strand, within AMB_RS15480at 3325.149 kb on + strand, within AMB_RS15480at 3325.149 kb on + strand, within AMB_RS15480at 3325.149 kb on + strand, within AMB_RS15480at 3325.150 kb on - strand, within AMB_RS15480at 3325.150 kb on - strand, within AMB_RS15480at 3325.150 kb on - strand, within AMB_RS15480at 3325.150 kb on - strand, within AMB_RS15480at 3325.152 kb on - strand, within AMB_RS15480at 3325.178 kb on + strand, within AMB_RS15480at 3325.247 kb on + strand, within AMB_RS15480at 3325.247 kb on + strand, within AMB_RS15480at 3325.247 kb on + strand, within AMB_RS15480at 3325.394 kb on + strand, within AMB_RS15480

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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3,322,973 + AMB_RS15470 0.11 -0.4
3,322,973 + AMB_RS15470 0.11 +1.2
3,322,973 + AMB_RS15470 0.11 -1.6
3,322,989 - AMB_RS15470 0.13 -0.2
3,323,036 + AMB_RS15470 0.18 +3.8
3,323,037 - AMB_RS15470 0.18 -1.1
3,323,159 + AMB_RS15470 0.30 -0.5
3,323,159 + AMB_RS15470 0.30 +0.4
3,323,160 - AMB_RS15470 0.30 +0.1
3,323,426 + AMB_RS15470 0.57 +0.4
3,323,427 - AMB_RS15470 0.57 +0.6
3,324,189 - AMB_RS15475 0.40 +0.8
3,324,916 - AMB_RS15480 0.23 -0.9
3,324,996 - AMB_RS15480 0.31 -0.3
3,324,999 + AMB_RS15480 0.32 -0.1
3,324,999 + AMB_RS15480 0.32 -1.8
3,325,085 + AMB_RS15480 0.41 -0.1
3,325,085 + AMB_RS15480 0.41 -1.3
3,325,085 + AMB_RS15480 0.41 +0.2
3,325,086 - AMB_RS15480 0.41 -0.4
3,325,086 - AMB_RS15480 0.41 -0.1
3,325,088 + AMB_RS15480 0.41 -0.4
3,325,088 + AMB_RS15480 0.41 +0.7
3,325,088 + AMB_RS15480 0.41 +0.5
3,325,088 + AMB_RS15480 0.41 +0.0
3,325,088 + AMB_RS15480 0.41 +0.8
3,325,088 + AMB_RS15480 0.41 -0.3
3,325,088 + AMB_RS15480 0.41 -0.3
3,325,089 - AMB_RS15480 0.41 -0.2
3,325,089 - AMB_RS15480 0.41 +0.5
3,325,089 - AMB_RS15480 0.41 -1.8
3,325,089 - AMB_RS15480 0.41 -0.9
3,325,089 - AMB_RS15480 0.41 -0.4
3,325,089 - AMB_RS15480 0.41 -1.5
3,325,149 + AMB_RS15480 0.47 -0.8
3,325,149 + AMB_RS15480 0.47 -0.3
3,325,149 + AMB_RS15480 0.47 -1.4
3,325,149 + AMB_RS15480 0.47 -0.6
3,325,149 + AMB_RS15480 0.47 +1.4
3,325,150 - AMB_RS15480 0.48 -0.1
3,325,150 - AMB_RS15480 0.48 +0.1
3,325,150 - AMB_RS15480 0.48 -0.9
3,325,150 - AMB_RS15480 0.48 -0.3
3,325,152 - AMB_RS15480 0.48 -0.2
3,325,178 + AMB_RS15480 0.51 +1.4
3,325,247 + AMB_RS15480 0.58 -0.6
3,325,247 + AMB_RS15480 0.58 -0.7
3,325,247 + AMB_RS15480 0.58 +0.6
3,325,394 + AMB_RS15480 0.73 -0.6

Or see this region's nucleotide sequence