Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14325

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14320 and AMB_RS14325 are separated by 2 nucleotidesAMB_RS14325 and AMB_RS14330 are separated by 62 nucleotides AMB_RS14320: AMB_RS14320 - AI-2E family transporter, at 3,045,141 to 3,046,217 _RS14320 AMB_RS14325: AMB_RS14325 - DUF2066 domain-containing protein, at 3,046,220 to 3,047,293 _RS14325 AMB_RS14330: AMB_RS14330 - phosphoribosylformylglycinamidine cyclo-ligase, at 3,047,356 to 3,048,450 _RS14330 Position (kb) 3046 3047 3048Strain fitness (log2 ratio) -2 -1 0 1at 3046.325 kb on - strandat 3046.325 kb on - strandat 3046.327 kb on - strandat 3046.327 kb on - strandat 3046.327 kb on - strandat 3046.436 kb on - strand, within AMB_RS14325at 3046.498 kb on - strand, within AMB_RS14325at 3046.498 kb on - strand, within AMB_RS14325at 3047.047 kb on - strand, within AMB_RS14325

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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3,046,325 - +0.4
3,046,325 - -0.1
3,046,327 - -0.5
3,046,327 - +0.1
3,046,327 - +0.8
3,046,436 - AMB_RS14325 0.20 -2.6
3,046,498 - AMB_RS14325 0.26 -0.2
3,046,498 - AMB_RS14325 0.26 +0.8
3,047,047 - AMB_RS14325 0.77 -0.1

Or see this region's nucleotide sequence