Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09255

Experiment: 150_initial_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS09245 and AMB_RS09250 overlap by 4 nucleotidesAMB_RS09250 and AMB_RS09255 are separated by 13 nucleotidesAMB_RS09255 and AMB_RS09260 overlap by 1 nucleotides AMB_RS09245: AMB_RS09245 - transcriptional regulator, at 1,967,627 to 1,968,043 _RS09245 AMB_RS09250: AMB_RS09250 - arsenate reductase ArsC, at 1,968,040 to 1,968,540 _RS09250 AMB_RS09255: AMB_RS09255 - arsenate reductase ArsC, at 1,968,554 to 1,969,012 _RS09255 AMB_RS09260: AMB_RS09260 - arsenical-resistance protein, at 1,969,012 to 1,970,070 _RS09260 Position (kb) 1968 1969 1970Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1967.683 kb on + strand, within AMB_RS09245at 1967.683 kb on + strand, within AMB_RS09245at 1967.683 kb on + strand, within AMB_RS09245at 1967.828 kb on + strand, within AMB_RS09245at 1967.828 kb on + strand, within AMB_RS09245at 1967.828 kb on + strand, within AMB_RS09245at 1967.829 kb on - strand, within AMB_RS09245at 1967.829 kb on - strand, within AMB_RS09245at 1967.831 kb on + strand, within AMB_RS09245at 1967.832 kb on - strand, within AMB_RS09245at 1967.861 kb on + strand, within AMB_RS09245at 1968.055 kb on + strandat 1968.055 kb on + strandat 1968.055 kb on + strandat 1968.056 kb on - strandat 1968.056 kb on - strandat 1968.056 kb on - strandat 1968.649 kb on + strand, within AMB_RS09255at 1968.649 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.662 kb on + strand, within AMB_RS09255at 1968.663 kb on - strand, within AMB_RS09255at 1968.663 kb on - strand, within AMB_RS09255at 1968.664 kb on + strand, within AMB_RS09255at 1968.665 kb on - strand, within AMB_RS09255at 1968.944 kb on + strand, within AMB_RS09255at 1968.944 kb on + strand, within AMB_RS09255at 1968.945 kb on - strand, within AMB_RS09255at 1969.360 kb on + strand, within AMB_RS09260at 1969.360 kb on + strand, within AMB_RS09260at 1969.360 kb on + strand, within AMB_RS09260at 1969.361 kb on - strand, within AMB_RS09260at 1969.603 kb on + strand, within AMB_RS09260at 1969.603 kb on + strand, within AMB_RS09260at 1969.603 kb on + strand, within AMB_RS09260at 1969.603 kb on + strand, within AMB_RS09260at 1969.604 kb on - strand, within AMB_RS09260at 1969.604 kb on - strand, within AMB_RS09260at 1969.604 kb on - strand, within AMB_RS09260at 1969.825 kb on - strand, within AMB_RS09260at 1969.825 kb on - strand, within AMB_RS09260at 1969.825 kb on - strand, within AMB_RS09260at 1969.840 kb on + strand, within AMB_RS09260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
remove
1,967,683 + AMB_RS09245 0.13 -1.7
1,967,683 + AMB_RS09245 0.13 -0.6
1,967,683 + AMB_RS09245 0.13 -1.2
1,967,828 + AMB_RS09245 0.48 +0.8
1,967,828 + AMB_RS09245 0.48 -1.2
1,967,828 + AMB_RS09245 0.48 -0.4
1,967,829 - AMB_RS09245 0.48 -0.6
1,967,829 - AMB_RS09245 0.48 -0.6
1,967,831 + AMB_RS09245 0.49 -0.5
1,967,832 - AMB_RS09245 0.49 -0.5
1,967,861 + AMB_RS09245 0.56 +0.2
1,968,055 + +0.6
1,968,055 + +1.1
1,968,055 + +0.1
1,968,056 - +0.2
1,968,056 - +0.2
1,968,056 - -0.1
1,968,649 + AMB_RS09255 0.21 +0.1
1,968,649 + AMB_RS09255 0.21 +0.7
1,968,662 + AMB_RS09255 0.24 -0.4
1,968,662 + AMB_RS09255 0.24 -1.0
1,968,662 + AMB_RS09255 0.24 +0.2
1,968,662 + AMB_RS09255 0.24 -0.3
1,968,662 + AMB_RS09255 0.24 -0.4
1,968,662 + AMB_RS09255 0.24 -0.9
1,968,663 - AMB_RS09255 0.24 -1.6
1,968,663 - AMB_RS09255 0.24 -0.2
1,968,664 + AMB_RS09255 0.24 -0.6
1,968,665 - AMB_RS09255 0.24 -0.8
1,968,944 + AMB_RS09255 0.85 +0.1
1,968,944 + AMB_RS09255 0.85 -1.3
1,968,945 - AMB_RS09255 0.85 -0.4
1,969,360 + AMB_RS09260 0.33 -2.4
1,969,360 + AMB_RS09260 0.33 -0.4
1,969,360 + AMB_RS09260 0.33 -1.4
1,969,361 - AMB_RS09260 0.33 -0.2
1,969,603 + AMB_RS09260 0.56 -0.4
1,969,603 + AMB_RS09260 0.56 -0.6
1,969,603 + AMB_RS09260 0.56 -0.1
1,969,603 + AMB_RS09260 0.56 -0.7
1,969,604 - AMB_RS09260 0.56 -0.9
1,969,604 - AMB_RS09260 0.56 -1.4
1,969,604 - AMB_RS09260 0.56 -4.2
1,969,825 - AMB_RS09260 0.77 -0.4
1,969,825 - AMB_RS09260 0.77 -1.9
1,969,825 - AMB_RS09260 0.77 -0.4
1,969,840 + AMB_RS09260 0.78 +0.2

Or see this region's nucleotide sequence