Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06715

Experiment: 150_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06710 and AMB_RS06715 overlap by 2 nucleotidesAMB_RS06715 and AMB_RS06720 are separated by 181 nucleotidesAMB_RS06720 and AMB_RS06725 are separated by 4 nucleotides AMB_RS06710: AMB_RS06710 - NAD-dependent succinate-semialdehyde dehydrogenase, at 1,438,349 to 1,439,806 _RS06710 AMB_RS06715: AMB_RS06715 - alpha/beta hydrolase, at 1,439,805 to 1,440,710 _RS06715 AMB_RS06720: AMB_RS06720 - class I SAM-dependent methyltransferase, at 1,440,892 to 1,441,578 _RS06720 AMB_RS06725: AMB_RS06725 - TRAP-type C4-dicarboxylate transport system, at 1,441,583 to 1,442,602 _RS06725 Position (kb) 1439 1440 1441Strain fitness (log2 ratio) -2 -1 0 1at 1438.896 kb on + strand, within AMB_RS06710at 1438.896 kb on + strand, within AMB_RS06710at 1438.897 kb on - strand, within AMB_RS06710at 1439.424 kb on + strand, within AMB_RS06710at 1439.424 kb on + strand, within AMB_RS06710at 1439.473 kb on - strand, within AMB_RS06710at 1439.761 kb on + strandat 1439.761 kb on + strandat 1439.761 kb on + strandat 1439.761 kb on + strandat 1439.762 kb on - strandat 1439.763 kb on + strandat 1439.763 kb on + strandat 1439.764 kb on - strandat 1439.838 kb on + strandat 1439.838 kb on + strandat 1439.838 kb on + strandat 1439.838 kb on + strandat 1439.838 kb on + strandat 1439.838 kb on + strandat 1439.838 kb on + strandat 1439.838 kb on + strandat 1439.838 kb on + strandat 1439.839 kb on - strandat 1439.839 kb on - strandat 1439.840 kb on + strandat 1439.840 kb on + strandat 1439.840 kb on + strandat 1439.841 kb on - strandat 1439.841 kb on - strandat 1439.841 kb on - strandat 1439.895 kb on + strandat 1439.896 kb on - strand, within AMB_RS06715at 1440.099 kb on + strand, within AMB_RS06715at 1440.100 kb on - strand, within AMB_RS06715at 1440.100 kb on - strand, within AMB_RS06715at 1440.114 kb on + strand, within AMB_RS06715at 1440.114 kb on + strand, within AMB_RS06715at 1440.114 kb on + strand, within AMB_RS06715at 1440.114 kb on + strand, within AMB_RS06715at 1440.114 kb on + strand, within AMB_RS06715at 1440.114 kb on + strand, within AMB_RS06715at 1440.114 kb on + strand, within AMB_RS06715at 1440.114 kb on + strand, within AMB_RS06715at 1440.114 kb on + strand, within AMB_RS06715at 1440.115 kb on - strand, within AMB_RS06715at 1440.115 kb on - strand, within AMB_RS06715at 1440.115 kb on - strand, within AMB_RS06715at 1440.115 kb on - strand, within AMB_RS06715at 1440.115 kb on - strand, within AMB_RS06715at 1440.115 kb on - strand, within AMB_RS06715at 1440.115 kb on - strand, within AMB_RS06715at 1440.117 kb on - strand, within AMB_RS06715at 1440.303 kb on + strand, within AMB_RS06715at 1440.303 kb on + strand, within AMB_RS06715at 1440.304 kb on - strand, within AMB_RS06715at 1440.366 kb on + strand, within AMB_RS06715at 1440.366 kb on + strand, within AMB_RS06715at 1440.366 kb on + strand, within AMB_RS06715at 1440.366 kb on + strand, within AMB_RS06715at 1440.367 kb on - strand, within AMB_RS06715at 1440.367 kb on - strand, within AMB_RS06715at 1440.504 kb on + strand, within AMB_RS06715at 1440.523 kb on - strand, within AMB_RS06715at 1440.523 kb on - strand, within AMB_RS06715at 1440.523 kb on - strand, within AMB_RS06715at 1440.577 kb on + strand, within AMB_RS06715at 1440.577 kb on + strand, within AMB_RS06715at 1440.577 kb on + strand, within AMB_RS06715at 1440.577 kb on + strand, within AMB_RS06715at 1440.577 kb on + strand, within AMB_RS06715at 1440.578 kb on - strand, within AMB_RS06715at 1440.578 kb on - strand, within AMB_RS06715at 1440.578 kb on - strand, within AMB_RS06715at 1440.703 kb on + strandat 1440.774 kb on + strandat 1440.775 kb on - strandat 1440.775 kb on - strandat 1440.775 kb on - strandat 1440.775 kb on - strandat 1440.775 kb on - strandat 1440.842 kb on + strandat 1440.843 kb on - strandat 1441.244 kb on + strand, within AMB_RS06720at 1441.244 kb on + strand, within AMB_RS06720at 1441.244 kb on + strand, within AMB_RS06720at 1441.244 kb on + strand, within AMB_RS06720at 1441.245 kb on - strand, within AMB_RS06720at 1441.245 kb on - strand, within AMB_RS06720at 1441.245 kb on - strand, within AMB_RS06720at 1441.463 kb on + strand, within AMB_RS06720at 1441.517 kb on + strandat 1441.518 kb on - strandat 1441.598 kb on + strandat 1441.598 kb on + strandat 1441.598 kb on + strandat 1441.599 kb on - strandat 1441.599 kb on - strandat 1441.599 kb on - strandat 1441.599 kb on - strandat 1441.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_3
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1,438,896 + AMB_RS06710 0.38 +1.2
1,438,896 + AMB_RS06710 0.38 -1.2
1,438,897 - AMB_RS06710 0.38 +0.0
1,439,424 + AMB_RS06710 0.74 -0.5
1,439,424 + AMB_RS06710 0.74 +0.2
1,439,473 - AMB_RS06710 0.77 -0.9
1,439,761 + +0.2
1,439,761 + +0.8
1,439,761 + +0.4
1,439,761 + -2.2
1,439,762 - -2.5
1,439,763 + -1.8
1,439,763 + -0.1
1,439,764 - +0.4
1,439,838 + -1.2
1,439,838 + +0.3
1,439,838 + -0.3
1,439,838 + +0.1
1,439,838 + -1.6
1,439,838 + -0.1
1,439,838 + +0.2
1,439,838 + -0.0
1,439,838 + +0.3
1,439,839 - +0.6
1,439,839 - -0.0
1,439,840 + -0.8
1,439,840 + -0.4
1,439,840 + +0.4
1,439,841 - +0.5
1,439,841 - -0.1
1,439,841 - -0.4
1,439,895 + +1.1
1,439,896 - AMB_RS06715 0.10 -0.3
1,440,099 + AMB_RS06715 0.32 -0.2
1,440,100 - AMB_RS06715 0.33 -1.4
1,440,100 - AMB_RS06715 0.33 -1.2
1,440,114 + AMB_RS06715 0.34 -0.1
1,440,114 + AMB_RS06715 0.34 -0.0
1,440,114 + AMB_RS06715 0.34 +0.2
1,440,114 + AMB_RS06715 0.34 +0.7
1,440,114 + AMB_RS06715 0.34 +0.9
1,440,114 + AMB_RS06715 0.34 -0.6
1,440,114 + AMB_RS06715 0.34 +1.1
1,440,114 + AMB_RS06715 0.34 +0.1
1,440,114 + AMB_RS06715 0.34 -0.4
1,440,115 - AMB_RS06715 0.34 +0.3
1,440,115 - AMB_RS06715 0.34 +1.2
1,440,115 - AMB_RS06715 0.34 -0.4
1,440,115 - AMB_RS06715 0.34 +1.0
1,440,115 - AMB_RS06715 0.34 +0.2
1,440,115 - AMB_RS06715 0.34 -0.3
1,440,115 - AMB_RS06715 0.34 -0.8
1,440,117 - AMB_RS06715 0.34 -0.2
1,440,303 + AMB_RS06715 0.55 -0.2
1,440,303 + AMB_RS06715 0.55 +0.8
1,440,304 - AMB_RS06715 0.55 -0.5
1,440,366 + AMB_RS06715 0.62 +0.1
1,440,366 + AMB_RS06715 0.62 +0.7
1,440,366 + AMB_RS06715 0.62 -0.5
1,440,366 + AMB_RS06715 0.62 +0.3
1,440,367 - AMB_RS06715 0.62 +0.4
1,440,367 - AMB_RS06715 0.62 -0.3
1,440,504 + AMB_RS06715 0.77 +0.2
1,440,523 - AMB_RS06715 0.79 +1.2
1,440,523 - AMB_RS06715 0.79 -0.7
1,440,523 - AMB_RS06715 0.79 -0.8
1,440,577 + AMB_RS06715 0.85 +0.2
1,440,577 + AMB_RS06715 0.85 -1.5
1,440,577 + AMB_RS06715 0.85 -0.9
1,440,577 + AMB_RS06715 0.85 -0.0
1,440,577 + AMB_RS06715 0.85 -0.4
1,440,578 - AMB_RS06715 0.85 -0.8
1,440,578 - AMB_RS06715 0.85 -0.1
1,440,578 - AMB_RS06715 0.85 +0.4
1,440,703 + -0.8
1,440,774 + -0.2
1,440,775 - +0.1
1,440,775 - +1.0
1,440,775 - +0.4
1,440,775 - -1.4
1,440,775 - +0.5
1,440,842 + +0.7
1,440,843 - +0.0
1,441,244 + AMB_RS06720 0.51 -0.3
1,441,244 + AMB_RS06720 0.51 +0.1
1,441,244 + AMB_RS06720 0.51 -0.3
1,441,244 + AMB_RS06720 0.51 -1.2
1,441,245 - AMB_RS06720 0.51 -0.9
1,441,245 - AMB_RS06720 0.51 +0.5
1,441,245 - AMB_RS06720 0.51 -0.0
1,441,463 + AMB_RS06720 0.83 -0.8
1,441,517 + -0.7
1,441,518 - +0.4
1,441,598 + +0.7
1,441,598 + -0.5
1,441,598 + -0.0
1,441,599 - +1.4
1,441,599 - -0.4
1,441,599 - -0.1
1,441,599 - -1.8
1,441,599 - +0.6

Or see this region's nucleotide sequence